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Search of human proteins with 40254928
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40254928 solute carrier family 39 (zinc transporter), member
9 [Homo sapiens]
(307 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40254928 solute carrier family 39 (zinc transporter), member ... 594 e-170
gi|187936949 solute carrier family 39 (zinc transporter), member... 60 3e-09
gi|55741750 solute carrier family 39 (zinc transporter), member ... 60 3e-09
gi|223633937 solute carrier family 39 (zinc transporter), member... 59 5e-09
gi|223633939 solute carrier family 39 (zinc transporter), member... 59 7e-09
gi|153252201 solute carrier family 39 (zinc transporter), member... 55 6e-08
gi|117553619 solute carrier family 39, member 7 [Homo sapiens] 52 9e-07
gi|117553608 solute carrier family 39, member 7 [Homo sapiens] 52 9e-07
gi|115430259 solute carrier family 39 (zinc transporter), member... 51 1e-06
gi|115430255 solute carrier family 39 (zinc transporter), member... 51 1e-06
gi|156415986 solute carrier family 39 (zinc transporter), member... 51 1e-06
gi|153252214 solute carrier family 39 (zinc transporter), member... 46 4e-05
gi|206597541 solute carrier family 39 (metal ion transporter), m... 45 6e-05
gi|206597539 solute carrier family 39 (metal ion transporter), m... 45 6e-05
gi|190014617 solute carrier family 39 (zinc transporter), member... 43 4e-04
gi|40255101 solute carrier family 39 (zinc transporter), member ... 42 7e-04
gi|21361423 solute carrier family 39 (zinc transporter), member ... 40 0.003
gi|190358541 solute carrier family 39 (zinc transporter), member... 35 0.064
gi|222080086 zinc transporter like 2 [Homo sapiens] 34 0.19
gi|40255009 zinc transporter like 2 [Homo sapiens] 34 0.19
gi|24586665 solute carrier family 39 (zinc transporter), member ... 33 0.24
gi|205830407 solute carrier family 39 (zinc transporter), member... 33 0.24
gi|205830405 solute carrier family 39 (zinc transporter), member... 33 0.24
gi|205830403 solute carrier family 39 (zinc transporter), member... 33 0.24
gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit ... 30 2.7
gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo ... 30 2.7
gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo ... 30 2.7
gi|32490561 solute carrier family 39 (zinc transporter), member ... 29 4.6
gi|6005762 frizzled 10 [Homo sapiens] 29 6.0
gi|38505215 zinc finger protein 614 [Homo sapiens] 28 7.8
>gi|40254928 solute carrier family 39 (zinc transporter), member 9
[Homo sapiens]
Length = 307
Score = 594 bits (1531), Expect = e-170
Identities = 307/307 (100%), Positives = 307/307 (100%)
Query: 1 MDDFISISLLSLAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAGLLCGTALAVIVPEGVH 60
MDDFISISLLSLAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAGLLCGTALAVIVPEGVH
Sbjct: 1 MDDFISISLLSLAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAGLLCGTALAVIVPEGVH 60
Query: 61 ALYEDILEGKHHQASETHNVIASDKAAEKSVVHEHEHSHDHTQLHAYIGVSLVLGFVFML 120
ALYEDILEGKHHQASETHNVIASDKAAEKSVVHEHEHSHDHTQLHAYIGVSLVLGFVFML
Sbjct: 61 ALYEDILEGKHHQASETHNVIASDKAAEKSVVHEHEHSHDHTQLHAYIGVSLVLGFVFML 120
Query: 121 LVDQIGNSHVHSTDDPEAARSSNSKITTTLGLVVHAAADGVALGAAASTSQTSVQLIVFV 180
LVDQIGNSHVHSTDDPEAARSSNSKITTTLGLVVHAAADGVALGAAASTSQTSVQLIVFV
Sbjct: 121 LVDQIGNSHVHSTDDPEAARSSNSKITTTLGLVVHAAADGVALGAAASTSQTSVQLIVFV 180
Query: 181 AIMLHKAPAAFGLVSFLMHAGLERNRIRKHLLVFALAAPVMSMVTYLGLSKSSKEALSEV 240
AIMLHKAPAAFGLVSFLMHAGLERNRIRKHLLVFALAAPVMSMVTYLGLSKSSKEALSEV
Sbjct: 181 AIMLHKAPAAFGLVSFLMHAGLERNRIRKHLLVFALAAPVMSMVTYLGLSKSSKEALSEV 240
Query: 241 NATGVAMLFSAGTFLYVATVHVLPEVGGIGHSHKPDATGGRGLSRLEVAALVLGCLIPLI 300
NATGVAMLFSAGTFLYVATVHVLPEVGGIGHSHKPDATGGRGLSRLEVAALVLGCLIPLI
Sbjct: 241 NATGVAMLFSAGTFLYVATVHVLPEVGGIGHSHKPDATGGRGLSRLEVAALVLGCLIPLI 300
Query: 301 LSVGHQH 307
LSVGHQH
Sbjct: 301 LSVGHQH 307
>gi|187936949 solute carrier family 39 (zinc transporter), member 10
[Homo sapiens]
Length = 831
Score = 59.7 bits (143), Expect = 3e-09
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 57 EGVHALYEDILEGKHHQASETHNVIASDKAAEKSVVHEHEHSHDHTQLHAYIGVSLVLGF 116
+G+H ++E L H A+ H+ K+V+ +H H H H
Sbjct: 611 DGLHTIHEHDL----HAAAHNHH------GENKTVLRKHNHQWHHKHSH----------- 649
Query: 117 VFMLLVDQIGNSH--VHSTDDPEAARSSNSKITTTLGLVVHAAADGVALGAAASTSQTSV 174
+SH HS D + +N +G +H +DG+A+GAA S T
Sbjct: 650 ----------HSHGPCHSGSDLKETGIANIAWMVIMGDGIHNFSDGLAIGAAFSAGLTG- 698
Query: 175 QLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKHLLVFALAAPVMSMVTYLGLSKSSK 234
+ +A+ H+ P G + L+ AG+ K +V+ L + +M+ Y+G+ +
Sbjct: 699 GISTSIAVFCHELPHELGDFAVLLKAGMTV----KQAIVYNLLS---AMMAYIGMLIGTA 751
Query: 235 EALSEVNATGVAMLFSAGTFLYVATVHVLPEV 266
N T +AG FLYVA V +LPE+
Sbjct: 752 VGQYANNITLWIFAVTAGMFLYVALVDMLPEM 783
Score = 28.9 bits (63), Expect = 6.0
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 29/101 (28%)
Query: 5 ISISLLSLAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAGLLCGTALAVIVPEGVHALYE 64
ISI+++SL L+G + II + L + L G + G AL ++P
Sbjct: 412 ISITVISLLSLLGVILVPIINQGC--FKFLLTFLVALAVGTMSGDALLHLLP-------- 461
Query: 65 DILEGKHHQASETHNVIASDKAAEKSVVHEHEHSHDHTQLH 105
H Q H+ H+H H H H+ H
Sbjct: 462 ------HSQGGHDHS-------------HQHAHGHGHSHGH 483
>gi|55741750 solute carrier family 39 (zinc transporter), member 10
[Homo sapiens]
Length = 831
Score = 59.7 bits (143), Expect = 3e-09
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 57 EGVHALYEDILEGKHHQASETHNVIASDKAAEKSVVHEHEHSHDHTQLHAYIGVSLVLGF 116
+G+H ++E L H A+ H+ K+V+ +H H H H
Sbjct: 611 DGLHTIHEHDL----HAAAHNHH------GENKTVLRKHNHQWHHKHSH----------- 649
Query: 117 VFMLLVDQIGNSH--VHSTDDPEAARSSNSKITTTLGLVVHAAADGVALGAAASTSQTSV 174
+SH HS D + +N +G +H +DG+A+GAA S T
Sbjct: 650 ----------HSHGPCHSGSDLKETGIANIAWMVIMGDGIHNFSDGLAIGAAFSAGLTG- 698
Query: 175 QLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKHLLVFALAAPVMSMVTYLGLSKSSK 234
+ +A+ H+ P G + L+ AG+ K +V+ L + +M+ Y+G+ +
Sbjct: 699 GISTSIAVFCHELPHELGDFAVLLKAGMTV----KQAIVYNLLS---AMMAYIGMLIGTA 751
Query: 235 EALSEVNATGVAMLFSAGTFLYVATVHVLPEV 266
N T +AG FLYVA V +LPE+
Sbjct: 752 VGQYANNITLWIFAVTAGMFLYVALVDMLPEM 783
Score = 28.9 bits (63), Expect = 6.0
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 29/101 (28%)
Query: 5 ISISLLSLAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAGLLCGTALAVIVPEGVHALYE 64
ISI+++SL L+G + II + L + L G + G AL ++P
Sbjct: 412 ISITVISLLSLLGVILVPIINQGC--FKFLLTFLVALAVGTMSGDALLHLLP-------- 461
Query: 65 DILEGKHHQASETHNVIASDKAAEKSVVHEHEHSHDHTQLH 105
H Q H+ H+H H H H+ H
Sbjct: 462 ------HSQGGHDHS-------------HQHAHGHGHSHGH 483
>gi|223633937 solute carrier family 39 (zinc transporter), member 12
isoform 2 [Homo sapiens]
Length = 654
Score = 58.9 bits (141), Expect = 5e-09
Identities = 83/323 (25%), Positives = 143/323 (44%), Gaps = 63/323 (19%)
Query: 5 ISISLLSLAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAGLLCGTALAVIVPEGVHALYE 64
++++LL+L ++G + N+ L+L L G L G AL ++P+ +
Sbjct: 372 VAVTLLTLGSMLGTALVLFHSCEENY-RLILQLFVGLAVGTLSGDALLHLIPQVL----- 425
Query: 65 DILEGKHHQASETHNVIASDKAAEKSVVHEHEHSHDHTQLHAYIGVSLVLGFV-----FM 119
G H Q + H HE +L IG + GF F+
Sbjct: 426 ----GLHKQEAPEFG-------------HFHESKGHIWKLMGLIGG--IHGFFLIEKCFI 466
Query: 120 LLVDQIGNSHVHSTDDPEAAR-------SSNSK--------ITTTLGLVVHAAADGVALG 164
LLV + S +D +AA +SN K I +G +H ADG+A+G
Sbjct: 467 LLVSP---NDKKSPEDSQAAEMPIGSMTASNRKCKAISLLAIMILVGDSLHNFADGLAIG 523
Query: 165 AAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKHLLVFALAAPVMSMV 224
AA S+S S + +AI+ H+ P G + L+ +GL ++ +L+ +++ M
Sbjct: 524 AAFSSSSES-GVTTTIAILCHEIPHEMGDFAVLLSSGLS---MKTAILMNFISSLTAFMG 579
Query: 225 TYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEVGGIGHSHKPDATGGRGLS 284
Y+GLS S+ + + T +AG FLY++ V +LPE+ + + +P +
Sbjct: 580 LYIGLSVSADPCVQDWIFT-----VTAGMFLYLSLVEMLPEMTHV-QTQRPWM-----MF 628
Query: 285 RLEVAALVLGCLIPLILSVGHQH 307
L+ L+LG L L+L++ Q+
Sbjct: 629 LLQNFGLILGWLSLLLLAIYEQN 651
>gi|223633939 solute carrier family 39 (zinc transporter), member 12
isoform 1 [Homo sapiens]
Length = 691
Score = 58.5 bits (140), Expect = 7e-09
Identities = 85/347 (24%), Positives = 147/347 (42%), Gaps = 74/347 (21%)
Query: 5 ISISLLSLAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAGLLCGTALAVIVPEGVHALYE 64
++++LL+L ++G + N+ L+L L G L G AL ++P+ + +
Sbjct: 372 VAVTLLTLGSMLGTALVLFHSCEENY-RLILQLFVGLAVGTLSGDALLHLIPQVLGLHKQ 430
Query: 65 DILEGKHHQASETHN-----------------------VIASDKAAEKSVVHEHEHSHDH 101
+ E H S+ H V +DK V HSH H
Sbjct: 431 EAPEFGHFHESKGHIWKLMGLIGGIHGFFLIEKCFILLVSPNDKQGLSLVNGHVGHSH-H 489
Query: 102 TQLHAYIGVSLVLGFVFMLLVDQIGNSHVHST------DDPEAAR-------SSNSK--- 145
L++ + DQ G ST +D +AA +SN K
Sbjct: 490 LALNSELS-------------DQAGRGKSASTIQLKSPEDSQAAEMPIGSMTASNRKCKA 536
Query: 146 -----ITTTLGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHA 200
I +G +H ADG+A+GAA S+S S + +AI+ H+ P G + L+ +
Sbjct: 537 ISLLAIMILVGDSLHNFADGLAIGAAFSSSSES-GVTTTIAILCHEIPHEMGDFAVLLSS 595
Query: 201 GLERNRIRKHLLVFALAAPVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATV 260
GL ++ +L+ +++ M Y+GLS S+ + + T +AG FLY++ V
Sbjct: 596 GLS---MKTAILMNFISSLTAFMGLYIGLSVSADPCVQDWIFT-----VTAGMFLYLSLV 647
Query: 261 HVLPEVGGIGHSHKPDATGGRGLSRLEVAALVLGCLIPLILSVGHQH 307
+LPE+ + + +P + L+ L+LG L L+L++ Q+
Sbjct: 648 EMLPEMTHV-QTQRPWM-----MFLLQNFGLILGWLSLLLLAIYEQN 688
>gi|153252201 solute carrier family 39 (zinc transporter), member 6
isoform 1 [Homo sapiens]
Length = 755
Score = 55.5 bits (132), Expect = 6e-08
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 34/214 (15%)
Query: 91 VVHEHEHSHDHTQLHAYIGVSLVLGFVFMLLVDQIGNSHVHSTDDPEAARSSNSKITTTL 150
++H H H + H H S +S ++ + A + +
Sbjct: 564 ILHHHHHQNHHPHSH----------------------SQRYSREELKDAGVATLAWMVIM 601
Query: 151 GLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKH 210
G +H +DG+A+GAA T S L VA+ H+ P G + L+ AG+ +++
Sbjct: 602 GDGLHNFSDGLAIGAAF-TEGLSSGLSTSVAVFCHELPHELGDFAVLLKAGMT---VKQA 657
Query: 211 LLVFALAAPVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEVGGIG 270
+L AL+A M+ YLG++ N + +AG F+YVA V ++PE +
Sbjct: 658 VLYNALSA----MLAYLGMATGIFIGHYAENVSMWIFALTAGLFMYVALVDMVPE---ML 710
Query: 271 HSHKPDATGGR-GLSRLEVAALVLGCLIPLILSV 303
H+ D R G L+ A ++LG I L++S+
Sbjct: 711 HNDASDHGCSRWGYFFLQNAGMLLGFGIMLLISI 744
>gi|117553619 solute carrier family 39, member 7 [Homo sapiens]
Length = 469
Score = 51.6 bits (122), Expect = 9e-07
Identities = 63/290 (21%), Positives = 114/290 (39%), Gaps = 43/290 (14%)
Query: 19 YVAGIIPLAVNFSEER--LKLVTVLGAGLLCGTALAVIVPEGVHALYEDILEGKHHQASE 76
+V +IP+ N R L+++ +G L G A ++P + LE H S
Sbjct: 151 FVLFLIPVESNSPRHRSLLQILLSFASGGLLGDAFLHLIPHALEPHSHHTLEQPGHGHSH 210
Query: 77 TH------------NVIASDKAAEKSVVHE---HEHSHDHTQLHAYIGVSLVLGFVFMLL 121
+ + I + EK V H H HSH H H++ S G
Sbjct: 211 SGQGPILSVGLWVLSGIVAFLVVEKFVRHVKGGHGHSHGHGHAHSHTRGSHGHGRQERST 270
Query: 122 VDQIGNSH----------------------VHSTDDPEAARSSNSKITTTLGL---VVHA 156
++ + V + E R + +++ L L + H
Sbjct: 271 KEKQSSEEEEKETRGVQKRRGGSTVPKDGPVRPQNAEEEKRGLDLRVSGYLNLAADLAHN 330
Query: 157 AADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKHLLVFAL 216
DG+A+GA+ + + ++ + ++LH+ P G + L+ +G + + + L+ A+
Sbjct: 331 FTDGLAIGASFRGGR-GLGILTTMTVLLHEVPHEVGDFAILVQSGCSKKQAMRLQLLTAV 389
Query: 217 AAPVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEV 266
A + L + ++ G + F+AG F+YVATV VLPE+
Sbjct: 390 GALAGTACALLTEGGAVGSEIAGGAGPGWVLPFTAGGFIYVATVSVLPEL 439
Score = 29.6 bits (65), Expect = 3.5
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 68 EGKHHQASETHNVIASDKAAEKSVVHEHEHSHDHTQLH 105
E HH S H + ++ H+H+H H H LH
Sbjct: 52 EDFHHGHSHAHGHGHTHESIWHGHTHDHDHGHSHEDLH 89
Score = 28.9 bits (63), Expect = 6.0
Identities = 59/245 (24%), Positives = 87/245 (35%), Gaps = 19/245 (7%)
Query: 41 LGAGLLCGTALAVIVPE--GVHALYEDILEGKH---HQASET-----HNVIASDKAAEKS 90
+ GLL L ++V G L++D+ E H H+ S H+ +S
Sbjct: 11 VAVGLLTWATLGLLVAGLGGHDDLHDDLQEDFHGHSHRHSHEDFHHGHSHAHGHGHTHES 70
Query: 91 VVHEHEHSHDHTQLHAYIGVSLVLGFVFMLLVDQIGNSHVHSTDDPEAARSSNSKITTTL 150
+ H H H HDH H + G+ L + G+ H H S I L
Sbjct: 71 IWHGHTHDHDHGHSHEDLHHGHSHGYSHESLYHR-GHGHDHEHSHGGYGESGAPGIKQDL 129
Query: 151 GLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMH--AGLERNRIR 208
V A ALGA S ++F+ + +P L+ L+ +G
Sbjct: 130 DAVTLWA---YALGATVLISAAPF-FVLFLIPVESNSPRHRSLLQILLSFASGGLLGDAF 185
Query: 209 KHLLVFALAAPVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEVGG 268
HL+ AL + G S + + G+ +L FL V V GG
Sbjct: 186 LHLIPHALEPHSHHTLEQPG-HGHSHSGQGPILSVGLWVLSGIVAFL-VVEKFVRHVKGG 243
Query: 269 IGHSH 273
GHSH
Sbjct: 244 HGHSH 248
>gi|117553608 solute carrier family 39, member 7 [Homo sapiens]
Length = 469
Score = 51.6 bits (122), Expect = 9e-07
Identities = 63/290 (21%), Positives = 114/290 (39%), Gaps = 43/290 (14%)
Query: 19 YVAGIIPLAVNFSEER--LKLVTVLGAGLLCGTALAVIVPEGVHALYEDILEGKHHQASE 76
+V +IP+ N R L+++ +G L G A ++P + LE H S
Sbjct: 151 FVLFLIPVESNSPRHRSLLQILLSFASGGLLGDAFLHLIPHALEPHSHHTLEQPGHGHSH 210
Query: 77 TH------------NVIASDKAAEKSVVHE---HEHSHDHTQLHAYIGVSLVLGFVFMLL 121
+ + I + EK V H H HSH H H++ S G
Sbjct: 211 SGQGPILSVGLWVLSGIVAFLVVEKFVRHVKGGHGHSHGHGHAHSHTRGSHGHGRQERST 270
Query: 122 VDQIGNSH----------------------VHSTDDPEAARSSNSKITTTLGL---VVHA 156
++ + V + E R + +++ L L + H
Sbjct: 271 KEKQSSEEEEKETRGVQKRRGGSTVPKDGPVRPQNAEEEKRGLDLRVSGYLNLAADLAHN 330
Query: 157 AADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKHLLVFAL 216
DG+A+GA+ + + ++ + ++LH+ P G + L+ +G + + + L+ A+
Sbjct: 331 FTDGLAIGASFRGGR-GLGILTTMTVLLHEVPHEVGDFAILVQSGCSKKQAMRLQLLTAV 389
Query: 217 AAPVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEV 266
A + L + ++ G + F+AG F+YVATV VLPE+
Sbjct: 390 GALAGTACALLTEGGAVGSEIAGGAGPGWVLPFTAGGFIYVATVSVLPEL 439
Score = 29.6 bits (65), Expect = 3.5
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 68 EGKHHQASETHNVIASDKAAEKSVVHEHEHSHDHTQLH 105
E HH S H + ++ H+H+H H H LH
Sbjct: 52 EDFHHGHSHAHGHGHTHESIWHGHTHDHDHGHSHEDLH 89
Score = 28.9 bits (63), Expect = 6.0
Identities = 59/245 (24%), Positives = 87/245 (35%), Gaps = 19/245 (7%)
Query: 41 LGAGLLCGTALAVIVPE--GVHALYEDILEGKH---HQASET-----HNVIASDKAAEKS 90
+ GLL L ++V G L++D+ E H H+ S H+ +S
Sbjct: 11 VAVGLLTWATLGLLVAGLGGHDDLHDDLQEDFHGHSHRHSHEDFHHGHSHAHGHGHTHES 70
Query: 91 VVHEHEHSHDHTQLHAYIGVSLVLGFVFMLLVDQIGNSHVHSTDDPEAARSSNSKITTTL 150
+ H H H HDH H + G+ L + G+ H H S I L
Sbjct: 71 IWHGHTHDHDHGHSHEDLHHGHSHGYSHESLYHR-GHGHDHEHSHGGYGESGAPGIKQDL 129
Query: 151 GLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMH--AGLERNRIR 208
V A ALGA S ++F+ + +P L+ L+ +G
Sbjct: 130 DAVTLWA---YALGATVLISAAPF-FVLFLIPVESNSPRHRSLLQILLSFASGGLLGDAF 185
Query: 209 KHLLVFALAAPVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEVGG 268
HL+ AL + G S + + G+ +L FL V V GG
Sbjct: 186 LHLIPHALEPHSHHTLEQPG-HGHSHSGQGPILSVGLWVLSGIVAFL-VVEKFVRHVKGG 243
Query: 269 IGHSH 273
GHSH
Sbjct: 244 HGHSH 248
>gi|115430259 solute carrier family 39 (zinc transporter), member 4
isoform 1 [Homo sapiens]
Length = 622
Score = 51.2 bits (121), Expect = 1e-06
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 149 TLGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIR 208
TLG VH ADG+A+GAA ++S L +A+ H+ P G + L+HAGL +R
Sbjct: 476 TLGDAVHNFADGLAVGAAFASS-WKTGLATSLAVFCHELPHELGDFAALLHAGLS---VR 531
Query: 209 KHLLVFALAAPVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLP 264
+ LL+ +A + + GL + +SE + + + + G FLYVA +LP
Sbjct: 532 QALLLNLASA----LTAFAGLYVALAVGVSEESEAWI-LAVATGLFLYVALCDMLP 582
>gi|115430255 solute carrier family 39 (zinc transporter), member 4
isoform 2 [Homo sapiens]
Length = 647
Score = 51.2 bits (121), Expect = 1e-06
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 149 TLGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIR 208
TLG VH ADG+A+GAA ++S L +A+ H+ P G + L+HAGL +R
Sbjct: 501 TLGDAVHNFADGLAVGAAFASS-WKTGLATSLAVFCHELPHELGDFAALLHAGLS---VR 556
Query: 209 KHLLVFALAAPVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLP 264
+ LL+ +A + + GL + +SE + + + + G FLYVA +LP
Sbjct: 557 QALLLNLASA----LTAFAGLYVALAVGVSEESEAWI-LAVATGLFLYVALCDMLP 607
>gi|156415986 solute carrier family 39 (zinc transporter), member 2
[Homo sapiens]
Length = 309
Score = 50.8 bits (120), Expect = 1e-06
Identities = 62/284 (21%), Positives = 113/284 (39%), Gaps = 51/284 (17%)
Query: 12 LAMLVGCYVAGI------IPLAVNFSEERLKLVTVLGAGLLCGTALAVIVPEGVHALYED 65
LA+ +GC + I I A L+L+ + AG+ G + E + +
Sbjct: 16 LALTLGCGLTPICFKWFQIDAARGHHRLVLRLLGCISAGVFLGAGFMHMTAEALEEIESQ 75
Query: 66 ILEGKHHQASETHNVIASDKAAEKSVVHEHEHSHDHTQLHAYIGVSLVLGFVFMLLVDQI 125
I + ++ + A+E++ + + +H + Y + + LGF F+ ++ +
Sbjct: 76 IQKF----------MVQNRSASERNSSGDADSAHME---YPYGELIISLGFFFVFFLESL 122
Query: 126 -------------------GNSHVHSTDD----PEAARSSNSKITTTLGLVVHAAADGVA 162
G +H+ P ++ + L L H+ +G+A
Sbjct: 123 ALQCCPGAAGGSTVQDEEWGGAHIFELHSHGHLPSPSKGPLRALVLLLSLSFHSVFEGLA 182
Query: 163 LGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKHLLVFALAAPVMS 222
+G + + T VQL + A++ HK FG+ L+H G +L+ AL +P+
Sbjct: 183 VGLQPTVAAT-VQLCL--AVLAHKGLVVFGVGMRLVHLGTSSRWAVFSILLLALMSPLGL 239
Query: 223 MV--TYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLP 264
V G L++ GVA AGTFLYV + +LP
Sbjct: 240 AVGLAVTGGDSEGGRGLAQAVLEGVA----AGTFLYVTFLEILP 279
>gi|153252214 solute carrier family 39 (zinc transporter), member 6
isoform 2 [Homo sapiens]
Length = 433
Score = 46.2 bits (108), Expect = 4e-05
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 30/173 (17%)
Query: 91 VVHEHEHSHDHTQLHAYIGVSLVLGFVFMLLVDQIGNSHVHSTDDPEAARSSNSKITTTL 150
++H H H + H H S +S ++ + A + +
Sbjct: 289 ILHHHHHQNHHPHSH----------------------SQRYSREELKDAGVATLAWMVIM 326
Query: 151 GLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKH 210
G +H +DG+A+GAA T S L VA+ H+ P G + L+ AG+ +++
Sbjct: 327 GDGLHNFSDGLAIGAAF-TEGLSSGLSTSVAVFCHELPHELGDFAVLLKAGM---TVKQA 382
Query: 211 LLVFALAAPVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVL 263
+L AL+A M+ YLG++ N + +AG F+YVA V ++
Sbjct: 383 VLYNALSA----MLAYLGMATGIFIGHYAENVSMWIFALTAGLFMYVALVDMV 431
>gi|206597541 solute carrier family 39 (metal ion transporter),
member 5 [Homo sapiens]
Length = 540
Score = 45.4 bits (106), Expect = 6e-05
Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 150 LGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRK 209
LG +H DG+A+GAA S +S L +A+ H+ P G + L+ +GL R
Sbjct: 389 LGDGLHNLTDGLAIGAAFSDGFSS-GLSTTLAVFCHELPHELGDFAMLLQSGLSFRR--- 444
Query: 210 HLLVFALAAPVMSM---VTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLP 264
LL+ +L + + + V +GLS L V T +AG FLYVA V +LP
Sbjct: 445 -LLLLSLVSGALGLGGAVLGVGLS------LGPVPLTPWVFGVTAGVFLYVALVDMLP 495
>gi|206597539 solute carrier family 39 (metal ion transporter),
member 5 [Homo sapiens]
Length = 540
Score = 45.4 bits (106), Expect = 6e-05
Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 150 LGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRK 209
LG +H DG+A+GAA S +S L +A+ H+ P G + L+ +GL R
Sbjct: 389 LGDGLHNLTDGLAIGAAFSDGFSS-GLSTTLAVFCHELPHELGDFAMLLQSGLSFRR--- 444
Query: 210 HLLVFALAAPVMSM---VTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLP 264
LL+ +L + + + V +GLS L V T +AG FLYVA V +LP
Sbjct: 445 -LLLLSLVSGALGLGGAVLGVGLS------LGPVPLTPWVFGVTAGVFLYVALVDMLP 495
>gi|190014617 solute carrier family 39 (zinc transporter), member 13
isoform a [Homo sapiens]
Length = 371
Score = 42.7 bits (99), Expect = 4e-04
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 15/115 (13%)
Query: 160 GVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKHLLVFAL--- 216
G+A+ A+ S+ + L+ +AI+LH+ P G + L+ AG +R K L AL
Sbjct: 233 GLAVAASFLVSK-KIGLLTTMAILLHEIPHEVGDFAILLRAGFDRWSAAKLQLSTALGGL 291
Query: 217 -----AAPVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEV 266
A S +G S +++E + V + F++G FLY+A V+VLP++
Sbjct: 292 LGAGFAICTQSPKGVVGCSPAAEETAAWV------LPFTSGGFLYIALVNVLPDL 340
>gi|40255101 solute carrier family 39 (zinc transporter), member 13
isoform b [Homo sapiens]
Length = 364
Score = 42.0 bits (97), Expect = 7e-04
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 160 GVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKHLLVFALAAP 219
G+A+ A+ S+ + L+ +AI+LH+ P G + L+ AG +R K L AL
Sbjct: 233 GLAVAASFLVSK-KIGLLTTMAILLHEIPHEVGDFAILLRAGFDRWSAAKLQLSTALGG- 290
Query: 220 VMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEV 266
+ + S + + E A + F++G FLY+A V+VLP++
Sbjct: 291 --LLGAGFAICTQSPKGVEETAAW--VLPFTSGGFLYIALVNVLPDL 333
>gi|21361423 solute carrier family 39 (zinc transporter), member 1
[Homo sapiens]
Length = 324
Score = 39.7 bits (91), Expect = 0.003
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 121 LVDQIGNSHVHSTDDPEAARSSNSKITTT--------LGLVVHAAADGVALGAAASTSQT 172
L+ + H D P ++S + T + L +H+ +G+A+G ++
Sbjct: 148 LLGTVNGGPQHWHDGPGVPQASGAPATPSALRACVLVFSLALHSVFEGLAVGLQRDRARA 207
Query: 173 SVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKHLLVFALAAPVMSMVTYLGLSKS 232
+ + +A++LHK A L L+ + L + ++F+ P+ +GL +
Sbjct: 208 ---MELCLALLLHKGILAVSLSLRLLQSHLRAQVVAGCGILFSCMTPLG-----IGLGAA 259
Query: 233 SKEALSEVNATGVAML--FSAGTFLYVATVHVLPE 265
E+ ++ ++L +AGTFLY+ + +LP+
Sbjct: 260 LAESAGPLHQLAQSVLEGMAAGTFLYITFLEILPQ 294
>gi|190358541 solute carrier family 39 (zinc transporter), member 14
isoform b [Homo sapiens]
Length = 492
Score = 35.4 bits (80), Expect = 0.064
Identities = 75/309 (24%), Positives = 125/309 (40%), Gaps = 58/309 (18%)
Query: 4 FISISLLSLAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAGLLCGTALAVIVPE--GVHA 61
F+S+SL++LA L+G V A F L L G L AL ++PE G +
Sbjct: 158 FLSVSLINLASLLGVLVLPCTEKA--FFSRVLTYFIALSIGTLLSNALFQLIPEAFGFNP 215
Query: 62 LYEDILEGKHHQASETHNVIASDKAAEKSVVHEHEHSHDHTQLHAYIGVSLVL------G 115
L + + + ++K + + ++EH H H+ Y SL G
Sbjct: 216 LEDYYVSKSAVVFGGFYLFFFTEKILKILLKQKNEHHHGHSH---YASESLPSKKDQEEG 272
Query: 116 FVFML-------LVDQIGNSHVH---------------STDDPEAARSS--------NSK 145
+ L ++ Q +S + S D +A++S+ S
Sbjct: 273 VMEKLQNGDLDHMIPQHCSSELDGKAPMVDEKVIVGSLSVQDLQASQSACYWLKGVRYSD 332
Query: 146 ITT-----TLGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHA 200
I T TL +H DG+A+GA+ + S + VAI+ + P G L++A
Sbjct: 333 IGTLAWMITLSDGLHNFIDGLAIGASFTVS-VFQGISTSVAILCEEFPHELGDFVILLNA 391
Query: 201 GLERNRIRKHLLVFALAAPVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATV 260
G+ I++ L L+A YLGL+ A S +A + L + G FLY++
Sbjct: 392 GMS---IQQALFFNFLSA----CCCYLGLAFGIL-AGSHFSANWIFAL-AGGMFLYISLA 442
Query: 261 HVLPEVGGI 269
+ PE+ +
Sbjct: 443 DMFPEMNEV 451
>gi|222080086 zinc transporter like 2 [Homo sapiens]
Length = 376
Score = 33.9 bits (76), Expect = 0.19
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 60 HALYEDILEGKHHQASETHNVIASDKAAEKSVVHEHEHSHDHTQLHAYIGVSL------- 112
H+L+ L+ H H+ AA H H+H+H H H++ G SL
Sbjct: 176 HSLFNGALDQAHGHVDHCHSHEVKHGAA-----HSHDHAHGHGHFHSHDGPSLKETTGPS 230
Query: 113 --VLGFVFM-LLVDQIGN 127
+L VF+ +L D +G+
Sbjct: 231 RQILQGVFLHILADTLGS 248
>gi|40255009 zinc transporter like 2 [Homo sapiens]
Length = 376
Score = 33.9 bits (76), Expect = 0.19
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 60 HALYEDILEGKHHQASETHNVIASDKAAEKSVVHEHEHSHDHTQLHAYIGVSL------- 112
H+L+ L+ H H+ AA H H+H+H H H++ G SL
Sbjct: 176 HSLFNGALDQAHGHVDHCHSHEVKHGAA-----HSHDHAHGHGHFHSHDGPSLKETTGPS 230
Query: 113 --VLGFVFM-LLVDQIGN 127
+L VF+ +L D +G+
Sbjct: 231 RQILQGVFLHILADTLGS 248
>gi|24586665 solute carrier family 39 (zinc transporter), member 8
isoform a [Homo sapiens]
Length = 460
Score = 33.5 bits (75), Expect = 0.24
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 149 TLGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIR 208
TL +H DG+A+GA+ + S L +AI+ + P G L++AG+ R
Sbjct: 308 TLCDALHNFIDGLAIGASCTLSLLQ-GLSTSIAILCEEFPHELGDFVILLNAGMST---R 363
Query: 209 KHLLVFALAAPVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEV 266
+ LL L+A Y+GL+ + A + + G FLY++ + PE+
Sbjct: 364 QALLFNFLSA----CSCYVGLAFGI--LVGNNFAPNIIFALAGGMFLYISLADMFPEM 415
>gi|205830407 solute carrier family 39 (zinc transporter), member 8
isoform c [Homo sapiens]
Length = 393
Score = 33.5 bits (75), Expect = 0.24
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 149 TLGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIR 208
TL +H DG+A+GA+ + S L +AI+ + P G L++AG+ R
Sbjct: 241 TLCDALHNFIDGLAIGASCTLSLLQ-GLSTSIAILCEEFPHELGDFVILLNAGMST---R 296
Query: 209 KHLLVFALAAPVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEV 266
+ LL L+A Y+GL+ + A + + G FLY++ + PE+
Sbjct: 297 QALLFNFLSA----CSCYVGLAFGI--LVGNNFAPNIIFALAGGMFLYISLADMFPEM 348
>gi|205830405 solute carrier family 39 (zinc transporter), member 8
isoform b [Homo sapiens]
Length = 444
Score = 33.5 bits (75), Expect = 0.24
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 149 TLGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIR 208
TL +H DG+A+GA+ + S L +AI+ + P G L++AG+ R
Sbjct: 308 TLCDALHNFIDGLAIGASCTLSLLQ-GLSTSIAILCEEFPHELGDFVILLNAGMST---R 363
Query: 209 KHLLVFALAAPVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEV 266
+ LL L+A Y+GL+ + A + + G FLY++ + PE+
Sbjct: 364 QALLFNFLSA----CSCYVGLAFGI--LVGNNFAPNIIFALAGGMFLYISLADMFPEM 415
>gi|205830403 solute carrier family 39 (zinc transporter), member 8
isoform a [Homo sapiens]
Length = 460
Score = 33.5 bits (75), Expect = 0.24
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 149 TLGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIR 208
TL +H DG+A+GA+ + S L +AI+ + P G L++AG+ R
Sbjct: 308 TLCDALHNFIDGLAIGASCTLSLLQ-GLSTSIAILCEEFPHELGDFVILLNAGMST---R 363
Query: 209 KHLLVFALAAPVMSMVTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEV 266
+ LL L+A Y+GL+ + A + + G FLY++ + PE+
Sbjct: 364 QALLFNFLSA----CSCYVGLAFGI--LVGNNFAPNIIFALAGGMFLYISLADMFPEM 415
>gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit II
[Homo sapiens]
Length = 64
Score = 30.0 bits (66), Expect = 2.7
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 87 AEKSVVHEHEHSHDHTQLHAYIGVSLVLGFVFMLLVDQIGNSHVHSTDDPE 137
A ++ E H HDHT + ++ SLVL + ++L ++ H +TD E
Sbjct: 12 ATSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKL--MHTSTTDAQE 60
>gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo
sapiens]
Length = 64
Score = 30.0 bits (66), Expect = 2.7
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 87 AEKSVVHEHEHSHDHTQLHAYIGVSLVLGFVFMLLVDQIGNSHVHSTDDPE 137
A ++ E H HDHT + ++ SLVL + ++L ++ H +TD E
Sbjct: 12 ATSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKL--MHTSTTDAQE 60
>gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo
sapiens]
Length = 64
Score = 30.0 bits (66), Expect = 2.7
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 87 AEKSVVHEHEHSHDHTQLHAYIGVSLVLGFVFMLLVDQIGNSHVHSTDDPE 137
A ++ E H HDHT + ++ SLVL + ++L ++ H +TD E
Sbjct: 12 ATSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKL--MHTSTTDAQE 60
>gi|32490561 solute carrier family 39 (zinc transporter), member 3
isoform a [Homo sapiens]
Length = 314
Score = 29.3 bits (64), Expect = 4.6
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 146 ITTTLGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERN 205
++ L H+ +G+ALG + + +FV + +H+ A L + + +
Sbjct: 171 LSLAFALSAHSVFEGLALGLQEEGEKV---VSLFVGVAVHETLVAVALGISMARSAMPLR 227
Query: 206 RIRKHLLVFALAAPVMSMVTY---LGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHV 262
K LA V +M+ LGL S + + A+ + + GTFL++ + +
Sbjct: 228 DAAK------LAVTVSAMIPLGIGLGLGIESAQGVPGSVASVLLQGLAGGTFLFITFLEI 281
Query: 263 L 263
L
Sbjct: 282 L 282
>gi|6005762 frizzled 10 [Homo sapiens]
Length = 581
Score = 28.9 bits (63), Expect = 6.0
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Query: 199 HAGLERNRIRKHLLVFALAAPVMSMVTYLGLSKSSKEALS--------EVNATGVAMLFS 250
H +E N HL +A+ P + + L + + + + L+ +VNA +L
Sbjct: 344 HEAIEANSSYFHLAAWAI--PAVKTILILVMRRVAGDELTGVCYVGSMDVNALTGFVLIP 401
Query: 251 AGTFLYVATVHVLPEVGGIGHSHKPDATGGRGLSRLEVAALVLG 294
+L + T +L + H + TGG +LE + +G
Sbjct: 402 LACYLVIGTSFILSGFVALFHIRRVMKTGGENTDKLEKLMVRIG 445
>gi|38505215 zinc finger protein 614 [Homo sapiens]
Length = 585
Score = 28.5 bits (62), Expect = 7.8
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Query: 62 LYEDILEGKHHQASETHNVIASDKAAEKSVVHEH--EHSHDHTQLHAYIGVSLVLGFVFM 119
L +L KH + + T + ++ + S V H HT+ +Y+ GF
Sbjct: 240 LSRSVLFTKHLKTNTTDKICIPNEYRKGSTVKSSLITHQQTHTEEKSYMCSECGKGFTMK 299
Query: 120 LLVDQIGNSHVHSTDDPEAARSSNSKITTTLGLVVH 155
+ I + HS + P + T L+VH
Sbjct: 300 RYL--IAHQRTHSGEKPYVCKECGKGFTVKSNLIVH 333
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,719,385
Number of Sequences: 37866
Number of extensions: 373461
Number of successful extensions: 1445
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1350
Number of HSP's gapped (non-prelim): 81
length of query: 307
length of database: 18,247,518
effective HSP length: 102
effective length of query: 205
effective length of database: 14,385,186
effective search space: 2948963130
effective search space used: 2948963130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.