Search of human proteins with 40217622

Search of human proteins with 40217622

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40217622 ventral anterior homeobox 1 isoform b [Homo
sapiens]
         (186 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40217622 ventral anterior homeobox 1 isoform b [Homo sapiens]      375   e-105
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]     291   2e-79
gi|7110735 ventral anterior homeobox 2 [Homo sapiens]                 148   2e-36
gi|94536800 empty spiracles homolog 1 [Homo sapiens]                   63   2e-10
gi|14149728 BarH-like homeobox 1 [Homo sapiens]                        59   2e-09
gi|14149611 empty spiracles homeobox 2 [Homo sapiens]                  57   9e-09
gi|126090909 engrailed homeobox 1 [Homo sapiens]                       55   3e-08
gi|89257348 homeo box HB9 [Homo sapiens]                               55   5e-08
gi|122937319 even-skipped homeobox 2 [Homo sapiens]                    54   6e-08
gi|7710121 engrailed homeobox 2 [Homo sapiens]                         54   8e-08
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]                51   7e-07
gi|5031761 homeobox A1 isoform a [Homo sapiens]                        51   7e-07
gi|33457326 GS homeobox 1 [Homo sapiens]                               50   9e-07
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  50   1e-06
gi|147901462 brain specific homeobox [Homo sapiens]                    50   1e-06
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  49   2e-06
gi|13273315 homeobox B4 [Homo sapiens]                                 49   2e-06
gi|4503615 even-skipped homeobox 1 [Homo sapiens]                      49   3e-06
gi|148613882 homeobox A4 [Homo sapiens]                                47   7e-06
gi|39930383 BarH-like homeobox 2 [Homo sapiens]                        47   7e-06
gi|24497517 homeobox A5 [Homo sapiens]                                 47   9e-06
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap...    47   9e-06
gi|7657180 VENT homeobox [Homo sapiens]                                47   9e-06
gi|4502365 NK3 homeobox 2 [Homo sapiens]                               47   9e-06
gi|226437602 NK1 homeobox 2 [Homo sapiens]                             47   1e-05
gi|157743259 H6 family homeobox 3 [Homo sapiens]                       47   1e-05
gi|24497538 homeobox C4 [Homo sapiens]                                 47   1e-05
gi|24497540 homeobox C4 [Homo sapiens]                                 47   1e-05
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  47   1e-05
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  47   1e-05

>gi|40217622 ventral anterior homeobox 1 isoform b [Homo sapiens]
          Length = 186

 Score =  375 bits (964), Expect = e-105
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC 60
           MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC
Sbjct: 1   MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC 60

Query: 61  NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ 120
           NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ
Sbjct: 61  NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ 120

Query: 121 RCQYVVGRERTELARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGG 180
           RCQYVVGRERTELARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGG
Sbjct: 121 RCQYVVGRERTELARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGG 180

Query: 181 RGWQPL 186
           RGWQPL
Sbjct: 181 RGWQPL 186


>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
          Length = 334

 Score =  291 bits (745), Expect = 2e-79
 Identities = 150/167 (89%), Positives = 152/167 (91%), Gaps = 5/167 (2%)

Query: 1   MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC 60
           MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC
Sbjct: 1   MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC 60

Query: 61  NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ 120
           NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ
Sbjct: 61  NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ 120

Query: 121 RCQYVVGRERTELARQLNLSETQANSEENNERFKRGIKKQKKKRKKE 167
           RCQYVVGRERTELARQLNLSETQ      N R      KQKK + K+
Sbjct: 121 RCQYVVGRERTELARQLNLSETQVKVWFQNRR-----TKQKKDQGKD 162


>gi|7110735 ventral anterior homeobox 2 [Homo sapiens]
          Length = 290

 Score =  148 bits (374), Expect = 2e-36
 Identities = 81/130 (62%), Positives = 94/130 (72%), Gaps = 10/130 (7%)

Query: 50  AFSASGAAEDCNKSKSNSA-ADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFT 108
           A S +G+ E    S       + D+CRRILVRDAKG+IREI+LPKGLDLDRPKRTRTSFT
Sbjct: 51  ASSPAGSRESGADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFT 110

Query: 109 AEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFKRGIKKQKKKRKKEP 168
           AEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQ          K   + ++ K+KK+ 
Sbjct: 111 AEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQV---------KVWFQNRRTKQKKDQ 161

Query: 169 ANDESRRGDS 178
           + D  +R  S
Sbjct: 162 SRDLEKRASS 171


>gi|94536800 empty spiracles homolog 1 [Homo sapiens]
          Length = 290

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 3/86 (3%)

Query: 99  RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFKRGIK 158
           +PKR RT+F+  QL RLE  F++  YVVG ER +LA  L+LSETQ      N R K    
Sbjct: 191 KPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTK---Y 247

Query: 159 KQKKKRKKEPANDESRRGDSGGRGWQ 184
           K++K  ++ P +++ ++G      W+
Sbjct: 248 KRQKLEEEGPESEQKKKGSHHINRWR 273


>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
          Length = 327

 Score = 58.9 bits (141), Expect = 2e-09
 Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 16/122 (13%)

Query: 40  PAAFLKEPQGAFSASGAAED----CNKSKSNSAADPDYCRRILVRDAKGSIREIILPKG- 94
           PAA   EP G  +A  AAED     +KS SN+++D +Y      +  +   REI   +  
Sbjct: 120 PAA--PEPGGRLAAK-AAEDFRDKLDKSGSNASSDSEY------KVKEEGDREISSSRDS 170

Query: 95  --LDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNER 152
             + L +P++ RT+FT  QL +LE  F+R +Y+  ++R ELA  LNL++TQ  +   N R
Sbjct: 171 PPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRR 230

Query: 153 FK 154
            K
Sbjct: 231 TK 232


>gi|14149611 empty spiracles homeobox 2 [Homo sapiens]
          Length = 252

 Score = 57.0 bits (136), Expect = 9e-09
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 99  RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFKRGIK 158
           +PKR RT+F+  QL RLE  F++  YVVG ER +LA  L+L+ETQ      N R K   K
Sbjct: 153 KPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWFQNRRTK--FK 210

Query: 159 KQKKKRKKEPANDESR 174
           +QK + +   +  + +
Sbjct: 211 RQKLEEEGSDSQQKKK 226


>gi|126090909 engrailed homeobox 1 [Homo sapiens]
          Length = 392

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 73  YCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTE 132
           YC R   R + G  R   L K  +    KR RT+FTAEQL RL+ EFQ  +Y+  + R  
Sbjct: 277 YCTRYSDRPSSGP-RTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQT 335

Query: 133 LARQLNLSETQANSEENNERFKRGIKK 159
           LA++L+L+E+Q      N+R K  IKK
Sbjct: 336 LAQELSLNESQIKIWFQNKRAK--IKK 360


>gi|89257348 homeo box HB9 [Homo sapiens]
          Length = 401

 Score = 54.7 bits (130), Expect = 5e-08
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 11/109 (10%)

Query: 83  KGSIREIILPKGLD---------LDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTEL 133
           + S   +ILPK  D         L + +R RT+FT++QL  LE +F+  +Y+   +R E+
Sbjct: 215 RASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEV 274

Query: 134 ARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGGRG 182
           A  L L+ETQ      N R K   K+ KK +++     E ++G  GG G
Sbjct: 275 ATSLMLTETQVKIWFQNRRMK--WKRSKKAKEQAAQEAEKQKGGGGGAG 321


>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
          Length = 476

 Score = 54.3 bits (129), Expect = 6e-08
 Identities = 47/120 (39%), Positives = 55/120 (45%), Gaps = 8/120 (6%)

Query: 37  GNLPAAFLKEPQG-AFSASGAAEDCNKSKSNSAADPDYCRRILVRDAKGSIREIILP-KG 94
           G L AA LKE  G  ++ SG+A     S S S          L   + GS     L   G
Sbjct: 129 GGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGS------LHGGSGGSGGSAALGGSG 182

Query: 95  LDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFK 154
              D+ +R RT+FT EQ+ RLE EF R  YV    R ELA  LNL ET       N R K
Sbjct: 183 SGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 242


>gi|7710121 engrailed homeobox 2 [Homo sapiens]
          Length = 333

 Score = 53.9 bits (128), Expect = 8e-08
 Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 15  DAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAE-DCNKSKSNSAADPD- 72
           D E    + + H  +++     G L  +      G    S +++ D +++ +N  A P  
Sbjct: 153 DGEGGSKTLSLHGGAKKGGDPGGPLDGSLKARGLGGGDLSVSSDSDSSQAGANLGAQPML 212

Query: 73  -----YCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVG 127
                YC R   R + G        K  + +  KR RT+FTAEQL RL+ EFQ  +Y+  
Sbjct: 213 WPAWVYCTRYSDRPSSGPRSRKPKKKNPNKE-DKRPRTAFTAEQLQRLKAEFQTNRYLTE 271

Query: 128 RERTELARQLNLSETQANSEENNERFKRGIKK 159
           + R  LA++L+L+E+Q      N+R K  IKK
Sbjct: 272 QRRQSLAQELSLNESQIKIWFQNKRAK--IKK 301


>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
          Length = 411

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 26/171 (15%)

Query: 12  CHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDCNKSKSNSAADP 71
           C   AE    S  A  +   + G   N P A  + P G  +A G A    +  + +AA P
Sbjct: 190 CQGAAETD-ASPGATVDEAAAPGPRENSPVA--QGPPGGAAAPGGAGTTPQGTA-TAAKP 245

Query: 72  DYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERT 131
              R+    D+K               +P+R RT+FT EQL  LE +F+  +Y+   ER 
Sbjct: 246 K--RKRTGSDSKSG-------------KPRRARTAFTYEQLVALENKFKATRYLSVCERL 290

Query: 132 ELARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGGRG 182
            LA  L+L+ETQ      N R        K K++   A+  +  G  GG G
Sbjct: 291 NLALSLSLTETQVKIWFQNRR-------TKWKKQNPGADTSAPTGGGGGPG 334


>gi|5031761 homeobox A1 isoform a [Homo sapiens]
          Length = 335

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 97  LDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFKRG 156
           L +P   RT+FT +QL  LE EF   +Y+    R E+A  L L+ETQ      N R K  
Sbjct: 226 LGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMK-- 283

Query: 157 IKKQKKKRKKE----------PANDESRRGDS 178
               +KKR+KE          P NDE     S
Sbjct: 284 ----QKKREKEGLLPISPATPPGNDEKAEESS 311


>gi|33457326 GS homeobox 1 [Homo sapiens]
          Length = 264

 Score = 50.4 bits (119), Expect = 9e-07
 Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 97  LDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFKRG 156
           L   KR RT+FT+ QL  LE EF    Y+    R E+A  LNLSE Q          K  
Sbjct: 144 LPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQV---------KIW 194

Query: 157 IKKQKKKRKKEPANDESRRGDSGGRG 182
            + ++ K KKE      R G  GG G
Sbjct: 195 FQNRRVKHKKEGKGSNHRGGGGGGAG 220


>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 814

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 26/171 (15%)

Query: 12  CHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDCNKSKSNSAADP 71
           C   AE    S  A  +   + G   N P A    P G  +A G A    +  + +AA P
Sbjct: 593 CQGAAETD-ASPGATVDEAAAPGPRENSPVA--PGPPGGAAAPGGAGTTPQGTA-TAAKP 648

Query: 72  DYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERT 131
              R+    D+K               +P+R RT+FT EQL  LE +F+  +Y+   ER 
Sbjct: 649 K--RKRTGSDSKSG-------------KPRRARTAFTYEQLVALENKFKATRYLSVCERL 693

Query: 132 ELARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGGRG 182
            LA  L+L+ETQ      N R        K K++   A+  +  G  GG G
Sbjct: 694 NLALSLSLTETQVKIWFQNRR-------TKWKKQNPGADTSAPTGGGGGPG 737


>gi|147901462 brain specific homeobox [Homo sapiens]
          Length = 233

 Score = 49.7 bits (117), Expect = 1e-06
 Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 99  RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFKRGIK 158
           R ++ RT F+  QL  LE  F+  +Y+   ER ELA  L+LSETQ  +   N R K   K
Sbjct: 109 RRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKH--K 166

Query: 159 KQKKKRKKEPANDESRRGDSG 179
           KQ +K + EP   +      G
Sbjct: 167 KQLRKSQDEPKAPDGPESPEG 187


>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 653

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 99  RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFKRGIK 158
           +P+R RT+FT EQL  LE +F+  +Y+   ER  LA  L+L+ETQ      N R      
Sbjct: 96  KPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRR------ 149

Query: 159 KQKKKRKKEPANDESRRGDSGGRG 182
             K K++   A+  +  G  GG G
Sbjct: 150 -TKWKKQNPGADTSAPTGGGGGPG 172


>gi|13273315 homeobox B4 [Homo sapiens]
          Length = 251

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 10/147 (6%)

Query: 42  AFLKEPQG---AFSASGAAEDCNKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLD 98
           A L EP     A S+S     C ++  + +     C+  +V      +    +       
Sbjct: 101 ALLPEPGQRCEAVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGG 160

Query: 99  RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFKRGIK 158
            PKR+RT++T +Q+  LE EF   +Y+  R R E+A  L LSE Q      N R K    
Sbjct: 161 EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMK---- 216

Query: 159 KQKKKRKKEPANDESRRGDSGGRGWQP 185
              KK  K P N + R G + G    P
Sbjct: 217 --WKKDHKLP-NTKIRSGGAAGSAGGP 240


>gi|4503615 even-skipped homeobox 1 [Homo sapiens]
          Length = 407

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 28/57 (49%), Positives = 32/57 (56%)

Query: 98  DRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFK 154
           D+ +R RT+FT EQ+ RLE EF R  YV    R ELA  LNL ET       N R K
Sbjct: 181 DQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 237


>gi|148613882 homeobox A4 [Homo sapiens]
          Length = 320

 Score = 47.4 bits (111), Expect = 7e-06
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 100 PKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFKRGIKK 159
           PKR+RT++T +Q+  LE EF   +Y+  R R E+A  L LSE Q      N R K   KK
Sbjct: 215 PKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMK--WKK 272

Query: 160 QKKKRKKEPANDESRRGDSGGRG 182
             K    +  +  S    +G  G
Sbjct: 273 DHKLPNTKMRSSNSASASAGPPG 295


>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
          Length = 387

 Score = 47.4 bits (111), Expect = 7e-06
 Identities = 22/56 (39%), Positives = 37/56 (66%)

Query: 99  RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFK 154
           +P++ RT+F+  QL +LE  F+R +Y+  ++R +LA  LNL++TQ  +   N R K
Sbjct: 231 KPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTK 286


>gi|24497517 homeobox A5 [Homo sapiens]
          Length = 270

 Score = 47.0 bits (110), Expect = 9e-06
 Identities = 42/131 (32%), Positives = 57/131 (43%), Gaps = 14/131 (10%)

Query: 32  SKGAEGNLPAAFLKEPQGAFSASGAAEDCNKSKSNSAAD------PDYCRRIL--VRDAK 83
           S GA  +  +  +   +G  +ASGA ED   S   ++A       P    +I   +R   
Sbjct: 125 SSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLH 184

Query: 84  GSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQ 143
            S   I  P+G      KR RT++T  Q   LE EF   +Y+  R R E+A  L LSE Q
Sbjct: 185 ISHDNIGGPEG------KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQ 238

Query: 144 ANSEENNERFK 154
                 N R K
Sbjct: 239 IKIWFQNRRMK 249


>gi|111120318 NK6 transcription factor related, locus 1 [Homo
           sapiens]
          Length = 367

 Score = 47.0 bits (110), Expect = 9e-06
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 95  LDLD-RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERF 153
           LD D + K TR +F+ +Q++ LE  F++ +Y+ G ER  LA  L ++E+Q      N R 
Sbjct: 230 LDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRT 289

Query: 154 ---KRGIKKQKKKRKKEPANDESRRGDS 178
              K+   +    +KK+ +  E  +G S
Sbjct: 290 KWRKKHAAEMATAKKKQDSETERLKGAS 317


>gi|7657180 VENT homeobox [Homo sapiens]
          Length = 258

 Score = 47.0 bits (110), Expect = 9e-06
 Identities = 26/56 (46%), Positives = 32/56 (57%)

Query: 99  RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFK 154
           R  R RT+FT EQ+  LE  FQ  QY+   ER  LAR++ LSE Q  +   N R K
Sbjct: 90  RAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMK 145


>gi|4502365 NK3 homeobox 2 [Homo sapiens]
          Length = 333

 Score = 47.0 bits (110), Expect = 9e-06
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 99  RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFK 154
           R KR+R +F+  Q++ LE  F   +Y+ G ER +LA  L L+ETQ      N R+K
Sbjct: 205 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYK 260


>gi|226437602 NK1 homeobox 2 [Homo sapiens]
          Length = 310

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 29/84 (34%), Positives = 42/84 (50%)

Query: 99  RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFKRGIK 158
           +P+R RT+FT EQL  LE +F+  +Y+   ER  LA  L+L+ETQ      N R K   +
Sbjct: 162 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 221

Query: 159 KQKKKRKKEPANDESRRGDSGGRG 182
                   +      + G +GG G
Sbjct: 222 NPGADGAAQVGGGAPQPGAAGGGG 245


>gi|157743259 H6 family homeobox 3 [Homo sapiens]
          Length = 357

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 30/150 (20%)

Query: 5   PDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDCNKSK 64
           PD  ++   S  E      ++ +  +E + A G   A+      GA +A+  AED  K  
Sbjct: 162 PDHKELDSKSPDEIILEESDSEESKKEGEAAPGAAGASV-----GAAAATPGAEDWKKGA 216

Query: 65  SNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQY 124
            +    P  CR+                        K+TRT F+  Q+++LE  F   +Y
Sbjct: 217 ESPEKKPA-CRK------------------------KKTRTVFSRSQVFQLESTFDMKRY 251

Query: 125 VVGRERTELARQLNLSETQANSEENNERFK 154
           +   ER  LA  L+L+ETQ      N R K
Sbjct: 252 LSSSERAGLAASLHLTETQVKIWFQNRRNK 281


>gi|24497538 homeobox C4 [Homo sapiens]
          Length = 264

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 24/55 (43%), Positives = 32/55 (58%)

Query: 100 PKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFK 154
           PKR+RT++T +Q+  LE EF   +Y+  R R E+A  L LSE Q      N R K
Sbjct: 156 PKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMK 210


>gi|24497540 homeobox C4 [Homo sapiens]
          Length = 264

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 24/55 (43%), Positives = 32/55 (58%)

Query: 100 PKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFK 154
           PKR+RT++T +Q+  LE EF   +Y+  R R E+A  L LSE Q      N R K
Sbjct: 156 PKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMK 210


>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 29/84 (34%), Positives = 42/84 (50%)

Query: 99  RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFKRGIK 158
           +P+R RT+FT EQL  LE +F+  +Y+   ER  LA  L+L+ETQ      N R K   +
Sbjct: 184 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 243

Query: 159 KQKKKRKKEPANDESRRGDSGGRG 182
                   +      + G +GG G
Sbjct: 244 NPGADGAAQVGGGAPQPGAAGGGG 267


>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 29/84 (34%), Positives = 42/84 (50%)

Query: 99  RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQANSEENNERFKRGIK 158
           +P+R RT+FT EQL  LE +F+  +Y+   ER  LA  L+L+ETQ      N R K   +
Sbjct: 184 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 243

Query: 159 KQKKKRKKEPANDESRRGDSGGRG 182
                   +      + G +GG G
Sbjct: 244 NPGADGAAQVGGGAPQPGAAGGGG 267


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,044,629
Number of Sequences: 37866
Number of extensions: 291728
Number of successful extensions: 2193
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 1771
Number of HSP's gapped (non-prelim): 466
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.