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Search of human proteins with 39780552
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|39780552 Vac14 homolog [Homo sapiens]
(782 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39780552 Vac14 homolog [Homo sapiens] 1551 0.0
gi|113431083 PREDICTED: similar to Vac14 homolog [Homo sapiens] 355 9e-98
gi|21361794 TIP120 protein [Homo sapiens] 37 0.071
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ... 37 0.071
gi|122937211 KIAA0368 protein [Homo sapiens] 34 0.60
gi|23510381 transportin 1 isoform 2 [Homo sapiens] 33 1.0
gi|133925811 transportin 1 isoform 1 [Homo sapiens] 33 1.0
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 33 1.3
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 32 1.7
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 32 1.7
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 32 1.7
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 32 1.7
gi|4502247 armadillo repeat protein [Homo sapiens] 32 1.7
gi|15431316 keratin, hair, basic, 4 [Homo sapiens] 32 2.3
gi|215422366 death-domain associated protein isoform b [Homo sap... 32 3.0
gi|27477127 keratin 82 [Homo sapiens] 32 3.0
gi|41393551 NAD synthetase 1 [Homo sapiens] 31 3.9
gi|54607053 GCN1 general control of amino-acid synthesis 1-like ... 31 3.9
gi|4503257 death-domain associated protein isoform a [Homo sapiens] 31 5.1
gi|215422388 death-domain associated protein isoform a [Homo sap... 31 5.1
gi|83367077 mucin 16 [Homo sapiens] 31 5.1
gi|27545313 ubiquitin specific peptidase 38 [Homo sapiens] 30 6.6
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 30 8.6
gi|41281683 disabled homolog 2 interacting protein isoform 2 [Ho... 30 8.6
gi|94967023 disabled homolog 2 interacting protein isoform 1 [Ho... 30 8.6
>gi|39780552 Vac14 homolog [Homo sapiens]
Length = 782
Score = 1551 bits (4017), Expect = 0.0
Identities = 782/782 (100%), Positives = 782/782 (100%)
Query: 1 MNPEKDFAPLTPNIVRALNDKLYEKRKVAALEIEKLVREFVAQNNTVQIKHVIQTLSQEF 60
MNPEKDFAPLTPNIVRALNDKLYEKRKVAALEIEKLVREFVAQNNTVQIKHVIQTLSQEF
Sbjct: 1 MNPEKDFAPLTPNIVRALNDKLYEKRKVAALEIEKLVREFVAQNNTVQIKHVIQTLSQEF 60
Query: 61 ALSQHPHSRKGGLIGLAACSIALGKDSGLYLKELIEPVLTCFNDADSRLRYYACEALYNI 120
ALSQHPHSRKGGLIGLAACSIALGKDSGLYLKELIEPVLTCFNDADSRLRYYACEALYNI
Sbjct: 61 ALSQHPHSRKGGLIGLAACSIALGKDSGLYLKELIEPVLTCFNDADSRLRYYACEALYNI 120
Query: 121 VKVARGAVLPHFNVLFDGLSKLAADPDPNVKSGSELLDRLLKDIVTESNKFDLVSFIPLL 180
VKVARGAVLPHFNVLFDGLSKLAADPDPNVKSGSELLDRLLKDIVTESNKFDLVSFIPLL
Sbjct: 121 VKVARGAVLPHFNVLFDGLSKLAADPDPNVKSGSELLDRLLKDIVTESNKFDLVSFIPLL 180
Query: 181 RERIYSNNQYARQFIISWILVLESVPDINLLDYLPEILDGLFQILGDNGKEIRKMCEVVL 240
RERIYSNNQYARQFIISWILVLESVPDINLLDYLPEILDGLFQILGDNGKEIRKMCEVVL
Sbjct: 181 RERIYSNNQYARQFIISWILVLESVPDINLLDYLPEILDGLFQILGDNGKEIRKMCEVVL 240
Query: 241 GEFLKEIKKNPSSVKFAEMANILVIHCQTTDDLIQLTAMCWMREFIQLAGRVMLPYSSGI 300
GEFLKEIKKNPSSVKFAEMANILVIHCQTTDDLIQLTAMCWMREFIQLAGRVMLPYSSGI
Sbjct: 241 GEFLKEIKKNPSSVKFAEMANILVIHCQTTDDLIQLTAMCWMREFIQLAGRVMLPYSSGI 300
Query: 301 LTAVLPCLAYDDRKKSIKEVANVCNQSLMKLVTPEDDELDELRPGQRQAEPTPDDALPKQ 360
LTAVLPCLAYDDRKKSIKEVANVCNQSLMKLVTPEDDELDELRPGQRQAEPTPDDALPKQ
Sbjct: 301 LTAVLPCLAYDDRKKSIKEVANVCNQSLMKLVTPEDDELDELRPGQRQAEPTPDDALPKQ 360
Query: 361 EGTASGGPDGSCDSSFSSGISVFTAASTERAPVTLHLDGIVQVLNCHLSDTAIGMMTRIA 420
EGTASGGPDGSCDSSFSSGISVFTAASTERAPVTLHLDGIVQVLNCHLSDTAIGMMTRIA
Sbjct: 361 EGTASGGPDGSCDSSFSSGISVFTAASTERAPVTLHLDGIVQVLNCHLSDTAIGMMTRIA 420
Query: 421 VLKWLYHLYIKTPRKMFRHTDSLFPILLQTLSDESDEVILKDLEVLAEIASSPAGQTDDP 480
VLKWLYHLYIKTPRKMFRHTDSLFPILLQTLSDESDEVILKDLEVLAEIASSPAGQTDDP
Sbjct: 421 VLKWLYHLYIKTPRKMFRHTDSLFPILLQTLSDESDEVILKDLEVLAEIASSPAGQTDDP 480
Query: 481 GPLDGPDLQASHSELQVPTPGRAGLLNTSGTKGLECSPSTPTMNSYFYKFMINLLKRFSS 540
GPLDGPDLQASHSELQVPTPGRAGLLNTSGTKGLECSPSTPTMNSYFYKFMINLLKRFSS
Sbjct: 481 GPLDGPDLQASHSELQVPTPGRAGLLNTSGTKGLECSPSTPTMNSYFYKFMINLLKRFSS 540
Query: 541 ERKLLEVRGPFIIRQLCLLLNAENIFHSMADILLREEDLKFASTMVHALNTILLTSTELF 600
ERKLLEVRGPFIIRQLCLLLNAENIFHSMADILLREEDLKFASTMVHALNTILLTSTELF
Sbjct: 541 ERKLLEVRGPFIIRQLCLLLNAENIFHSMADILLREEDLKFASTMVHALNTILLTSTELF 600
Query: 601 QLRNQLKDLKTLESQNLFCCLYRSWCHNPVTTVSLCFLTQNYRHAYDLIQKFGDLEVTVD 660
QLRNQLKDLKTLESQNLFCCLYRSWCHNPVTTVSLCFLTQNYRHAYDLIQKFGDLEVTVD
Sbjct: 601 QLRNQLKDLKTLESQNLFCCLYRSWCHNPVTTVSLCFLTQNYRHAYDLIQKFGDLEVTVD 660
Query: 661 FLAEVDKLVQLIECPIFTYLRLQLLDVKNNPYLIKALYGLLMLLPQSSAFQLLSHRLQCV 720
FLAEVDKLVQLIECPIFTYLRLQLLDVKNNPYLIKALYGLLMLLPQSSAFQLLSHRLQCV
Sbjct: 661 FLAEVDKLVQLIECPIFTYLRLQLLDVKNNPYLIKALYGLLMLLPQSSAFQLLSHRLQCV 720
Query: 721 PNPELLQTEDSLKAAPKSQKADSPSIDYAELLQHFEKVQNKHLEVRHQRSGRGDHLDRRV 780
PNPELLQTEDSLKAAPKSQKADSPSIDYAELLQHFEKVQNKHLEVRHQRSGRGDHLDRRV
Sbjct: 721 PNPELLQTEDSLKAAPKSQKADSPSIDYAELLQHFEKVQNKHLEVRHQRSGRGDHLDRRV 780
Query: 781 VL 782
VL
Sbjct: 781 VL 782
>gi|113431083 PREDICTED: similar to Vac14 homolog [Homo sapiens]
Length = 218
Score = 355 bits (911), Expect = 9e-98
Identities = 177/182 (97%), Positives = 178/182 (97%)
Query: 548 RGPFIIRQLCLLLNAENIFHSMADILLREEDLKFASTMVHALNTILLTSTELFQLRNQLK 607
R + RQLCLLLNAENIFHSMADILLREEDLKFASTMVHALNTILLTSTELFQLRNQLK
Sbjct: 37 RSGAVNRQLCLLLNAENIFHSMADILLREEDLKFASTMVHALNTILLTSTELFQLRNQLK 96
Query: 608 DLKTLESQNLFCCLYRSWCHNPVTTVSLCFLTQNYRHAYDLIQKFGDLEVTVDFLAEVDK 667
DLKTLESQNLFCCLYRSWCHNPVTTVSLCFLTQNYRHAYDLIQKFGDLEVTVDFLAEVDK
Sbjct: 97 DLKTLESQNLFCCLYRSWCHNPVTTVSLCFLTQNYRHAYDLIQKFGDLEVTVDFLAEVDK 156
Query: 668 LVQLIECPIFTYLRLQLLDVKNNPYLIKALYGLLMLLPQSSAFQLLSHRLQCVPNPELLQ 727
LVQLIECPIFTYLRLQLLDVKNNPYLIKALYGLLMLLPQSSAFQLLSHRLQCVPNPELLQ
Sbjct: 157 LVQLIECPIFTYLRLQLLDVKNNPYLIKALYGLLMLLPQSSAFQLLSHRLQCVPNPELLQ 216
Query: 728 TE 729
TE
Sbjct: 217 TE 218
>gi|21361794 TIP120 protein [Homo sapiens]
Length = 1230
Score = 37.0 bits (84), Expect = 0.071
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 49 IKHVIQTLSQEFALSQHPHSRKGGLIGLAACSIALGKDSGLYLKELIEPVLTCFNDADSR 108
I+H++ LS+ ++S + + + +AA S G G YL+++I V+ N D
Sbjct: 215 IEHLLSELSKNDSMS----TTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDE 270
Query: 109 LRYYACEALYNIVKVARGAVLPHFNVLFD-GLSKLAADPDPNVKSGSE 155
LR Y +A + V+ V PH + + + L L DP+ N E
Sbjct: 271 LREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE 318
>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
sapiens]
Length = 1835
Score = 37.0 bits (84), Expect = 0.071
Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 32/207 (15%)
Query: 544 LLEVRGPFI-IRQLCLLLNAENIFHSMADILLREEDLKFASTMVHALNTILLTSTELFQL 602
LL FI +RQL L + + + A++LL D K M H + L++ ++
Sbjct: 317 LLSAHSHFISLRQLGL----DTLGNIAAELLLDPVDFKTTHLMFHTVTKCLMSRDRFLKM 372
Query: 603 RNQ--LKDLKTLESQNLFCCLY-------RSWCHNPVTTVSLCFLTQNYRHAYDLIQKFG 653
R L +L E + C Y CH + V L T + ++ + G
Sbjct: 373 RGMEILGNLCKAEDNGVLICEYVDQDSYREIICHLTLPDVLLVISTLEVLY---MLTEMG 429
Query: 654 DLEVTVDFLAEVDKLVQLIECPIFTYLRLQLLDVKNNPYLIKALYGLLMLLPQSSAFQLL 713
D+ T +A+V+K + ++ C L+ + + AL + ++ SS+ Q+L
Sbjct: 430 DVACTK--IAKVEKSIDMLVC---------LVSMDIQMFGPDALAAVKLIEHPSSSHQML 478
Query: 714 SH-RLQCVPNPELLQTEDSLKAAPKSQ 739
S R Q + E +QT+ + +AP S+
Sbjct: 479 SEIRPQAI---EQVQTQTHVASAPASR 502
>gi|122937211 KIAA0368 protein [Homo sapiens]
Length = 2017
Score = 33.9 bits (76), Expect = 0.60
Identities = 41/204 (20%), Positives = 91/204 (44%), Gaps = 15/204 (7%)
Query: 118 YNIVKVARGAVL-PHFNVLFDGLSKLAADPDPNVKSGSELLDRLLKDIVTESNKFD--LV 174
+N++ G L P L L + DP+ ++ + + + +VT+ + D L
Sbjct: 1277 FNVIATRAGEQLAPFLPQLVPRLYRYQFDPNLGIR---QAMTSIWNALVTDKSMVDKYLK 1333
Query: 175 SFIPLLRERIYSNNQYARQF-IISWILVLESVPDINLLDYLPEILDGLFQILGDNGKEIR 233
+ L + + SN R+ ++ +L P +++D LPEI + LF++ D + +R
Sbjct: 1334 EILQDLVKNLTSNMWRVRESSCLALNDLLRGRPLDDIIDKLPEIWETLFRVQDDIKESVR 1393
Query: 234 KMCEVVLGEFLKEIKK--NPSSVKFAEMANILVIHC------QTTDDLIQLTAMCWMREF 285
K E+ L K K +P+ + ++ C +T ++ ++ + +
Sbjct: 1394 KAAELALKTLSKVCVKMCDPAKGAAGQRTIAALLPCLLDKGMMSTVTEVRALSINTLVKI 1453
Query: 286 IQLAGRVMLPYSSGILTAVLPCLA 309
+ AG ++ P++ ++ A+L L+
Sbjct: 1454 SKSAGAMLKPHAPKLIPALLESLS 1477
>gi|23510381 transportin 1 isoform 2 [Homo sapiens]
Length = 890
Score = 33.1 bits (74), Expect = 1.0
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 89 LYLKELIEPVLTCFNDADSRLRYYACEALYNIVKVARGAVLPHFNVLFDGLSKLAADPDP 148
L++ IE + D + +R C AL +++V +LPH + + + + + D D
Sbjct: 211 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDE 270
Query: 149 NV 150
NV
Sbjct: 271 NV 272
>gi|133925811 transportin 1 isoform 1 [Homo sapiens]
Length = 898
Score = 33.1 bits (74), Expect = 1.0
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 89 LYLKELIEPVLTCFNDADSRLRYYACEALYNIVKVARGAVLPHFNVLFDGLSKLAADPDP 148
L++ IE + D + +R C AL +++V +LPH + + + + + D D
Sbjct: 219 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDE 278
Query: 149 NV 150
NV
Sbjct: 279 NV 280
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 32.7 bits (73), Expect = 1.3
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 475 GQTDDPGPLDGPDLQASHSELQVP-------TPGRAGLLNTSGTKGLECSPSTP 521
G+T PGP P + E P +PGRAG T G GL+ SP P
Sbjct: 1278 GRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLP 1331
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 32.3 bits (72), Expect = 1.7
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 475 GQTDDPGPLDGPDLQASHSELQVPTPGRAGLLNTSGTKGLECSPSTP 521
G DPG L G + E QV PG GL G KGL+ P TP
Sbjct: 529 GAQGDPG-LKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTP 574
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 32.3 bits (72), Expect = 1.7
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 475 GQTDDPGPLDGPDLQASHSELQVPTPGRAGLLNTSGTKGLECSPSTP 521
G DPG L G + E QV PG GL G KGL+ P TP
Sbjct: 529 GAQGDPG-LKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTP 574
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 32.3 bits (72), Expect = 1.7
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 475 GQTDDPGPLDGPDLQASHSELQVPTPGRAGLLNTSGTKGLECSPSTP 521
G DPG L G + E QV PG GL G KGL+ P TP
Sbjct: 529 GAQGDPG-LKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTP 574
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 32.3 bits (72), Expect = 1.7
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 475 GQTDDPGPLDGPDLQASHSELQVPTPGRAGLLNTSGTKGLECSPSTP 521
G DPG L G + E QV PG GL G KGL+ P TP
Sbjct: 529 GAQGDPG-LKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTP 574
>gi|4502247 armadillo repeat protein [Homo sapiens]
Length = 962
Score = 32.3 bits (72), Expect = 1.7
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 19/112 (16%)
Query: 359 KQEGTASGGPDGSCDSSFSSGISVFTAASTERAP----------VTLHLDGIVQVLNCHL 408
K+E G DG D +F + + TE A V L+L + + N +
Sbjct: 623 KEEWFHQGKKDGEMDRNFDT---LDLPKRTEAAKGFELLYQPEVVRLYLSLLTESRNFNT 679
Query: 409 SDTAIGMMTRIAVLKWLYHLYIK-TPRKMFRHTDSLFPILLQTLSDESDEVI 459
+ A G + ++ W++ YI+ T RK + P+L++ L E+D+V+
Sbjct: 680 LEAAAGALQNLSAGNWMWATYIRATVRK-----ERGLPVLVELLQSETDKVV 726
>gi|15431316 keratin, hair, basic, 4 [Homo sapiens]
Length = 600
Score = 32.0 bits (71), Expect = 2.3
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 522 TMNSYFYKFMINLLKRFSSERKLLEVRGPFIIRQLCLLLNAENIFHSMADILLREEDLKF 581
T+N+ F F I+ ++ + KLLE + F+ Q C+ N E +F S L R+
Sbjct: 171 TLNNKFASF-IDKVRFLEQQNKLLETKWSFLQEQKCIRSNLEPLFESYITNLRRQ----- 224
Query: 582 ASTMVHALNTILLTSTELFQLRNQLKDL 609
L ++ L RN L+D+
Sbjct: 225 -------LEVLVSDQARLQAERNHLQDV 245
>gi|215422366 death-domain associated protein isoform b [Homo
sapiens]
Length = 752
Score = 31.6 bits (70), Expect = 3.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 329 MKLVTPEDDELDELRPGQRQAEPTPDDALPKQEGTASGGPDGSCDSSFSSG 379
+ ++ +DD+ DE + P P+ A P E +S P G+ SS S G
Sbjct: 17 LSIIVLDDDDEDEAAAQPGPSHPLPNAASPGAEAPSSSEPHGARGSSSSGG 67
>gi|27477127 keratin 82 [Homo sapiens]
Length = 513
Score = 31.6 bits (70), Expect = 3.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 523 MNSYFYKFMINLLKRFSSERKLLEVRGPFIIRQLCLLLNAENIFHSMADILLREED 578
+N+ F F IN ++ + KLLE + F+ +Q C N E IF L R+ D
Sbjct: 127 LNNRFASF-INKVRFLEQKNKLLETKWNFMQQQRCCQTNIEPIFEGYISALRRQLD 181
>gi|41393551 NAD synthetase 1 [Homo sapiens]
Length = 706
Score = 31.2 bits (69), Expect = 3.9
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 271 DDLIQLTAMCWMREFIQLAGRV--MLPYSSGILTAVLPCLAYDDRKKSIKEVANVCNQSL 328
++ I L CW+ +F++ + + +LP S G+ +A CL Y ++C Q
Sbjct: 329 EEEISLGPACWLWDFLRRSQQAGFLLPLSGGVDSAATACLIY-----------SMCCQVC 377
Query: 329 MKLVTPEDDELDELRPGQRQAEPTPDD 355
+ + ++ L ++R Q TP D
Sbjct: 378 EAVRSGNEEVLADVRTIVNQISYTPQD 404
>gi|54607053 GCN1 general control of amino-acid synthesis 1-like 1
[Homo sapiens]
Length = 2671
Score = 31.2 bits (69), Expect = 3.9
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 9/188 (4%)
Query: 61 ALSQHPHSRKGGLIGL-AACSIALGKDSGLYLKELIEPVLTCFNDADSRLRYYACEALYN 119
AL + K G + L A + K L ++ + D+ +++ +AL
Sbjct: 1505 ALEEESWRTKAGSVELLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQ 1564
Query: 120 IVKVARGA-VLPHFNVLFDGLSKLAADPDPNVKSGSELLDRLLKDIVTESNKFDLVSFIP 178
I V R +L VL D L+ DP+ K+ L L V + L +P
Sbjct: 1565 IGSVIRNPEILAIAPVLLDALT------DPSRKTQKCLQTLLDTKFVHFIDAPSLALIMP 1618
Query: 179 LLRERIYSNNQYARQFIISWILVLESVPDI-NLLDYLPEILDGLFQILGDNGKEIRKMCE 237
+++ + R+ I + S+ D +L YLP + GL L D E+R +
Sbjct: 1619 IVQRAFQDRSTDTRKMAAQIIGNMYSLTDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSA 1678
Query: 238 VVLGEFLK 245
LG +K
Sbjct: 1679 KALGAMVK 1686
>gi|4503257 death-domain associated protein isoform a [Homo sapiens]
Length = 740
Score = 30.8 bits (68), Expect = 5.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 331 LVTPEDDELDELRPGQRQAEPTPDDALPKQEGTASGGPDGSCDSSFSSG 379
++ +DD+ DE + P P+ A P E +S P G+ SS S G
Sbjct: 7 IIVLDDDDEDEAAAQPGPSHPLPNAASPGAEAPSSSEPHGARGSSSSGG 55
>gi|215422388 death-domain associated protein isoform a [Homo
sapiens]
Length = 740
Score = 30.8 bits (68), Expect = 5.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 331 LVTPEDDELDELRPGQRQAEPTPDDALPKQEGTASGGPDGSCDSSFSSG 379
++ +DD+ DE + P P+ A P E +S P G+ SS S G
Sbjct: 7 IIVLDDDDEDEAAAQPGPSHPLPNAASPGAEAPSSSEPHGARGSSSSGG 55
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 30.8 bits (68), Expect = 5.1
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 462 DLEVLAEIASSPAGQ-------TDDPGPLDGPDLQASHSELQVPTPGRAGLLNTSGTKGL 514
DL + + +SPAG+ T +P P L A+ T A LL TS +K +
Sbjct: 2513 DLPAMGFLKTSPAGEAHSLLASTIEPATAFTPHLSAAVVTGSSAT-SEASLLTTSESKAI 2571
Query: 515 ECSPSTPT 522
SP TPT
Sbjct: 2572 HSSPQTPT 2579
>gi|27545313 ubiquitin specific peptidase 38 [Homo sapiens]
Length = 1042
Score = 30.4 bits (67), Expect = 6.6
Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 16/137 (11%)
Query: 81 IALGKDSGLYLKELIEPV--LTCFNDADSRLRYYACEA------LYNIVKVARGAVLPHF 132
I GK S + ++L+ + C + + LR Y + L NI K +LP
Sbjct: 158 IPKGKLSITFCQQLVRTIGHFQCVSTQERELREYVSQVTKVSNLLQNIWKAEPATLLPSL 217
Query: 133 NVLFDGLSKLAADPDPNVKSGS-------ELLDRLLKDIVTESNKFDLVSFIPLLRERIY 185
+F +S A +P+V S +++ L++ + T+ N D S L I
Sbjct: 218 QEVFASISSTDASFEPSVALASLVQHIPLQMITVLIRSLTTDPNVKD-ASMTQALCRMID 276
Query: 186 SNNQYARQFIISWILVL 202
+ Q + +W++ L
Sbjct: 277 WLSWPLAQHVDTWVIAL 293
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 30.0 bits (66), Expect = 8.6
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 473 PAGQTDDPGPLDGPDLQASHSELQVPTPGRAGLLNTSGTKGLECSPSTP 521
PAG+ PGP GP S + PG AGL G KGL SP +P
Sbjct: 507 PAGERGSPGPA-GP----KGSPGEAGRPGEAGL---PGAKGLTGSPGSP 547
>gi|41281683 disabled homolog 2 interacting protein isoform 2 [Homo
sapiens]
Length = 1065
Score = 30.0 bits (66), Expect = 8.6
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 458 VILKDLEVLAEIASSPAGQTDDPGPLDGPDLQASHSELQVPTPGRAGLLNTSGTKGLECS 517
V L+D L A SPAG D P DG QA+ ++L P RA +N +G + +
Sbjct: 625 VDLQDARTLDGEAGSPAGP--DVLPTDG---QAAAAQLVAGWPARATPVNLAGLATVRRA 679
Query: 518 PSTPT 522
TPT
Sbjct: 680 GQTPT 684
>gi|94967023 disabled homolog 2 interacting protein isoform 1 [Homo
sapiens]
Length = 1132
Score = 30.0 bits (66), Expect = 8.6
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 458 VILKDLEVLAEIASSPAGQTDDPGPLDGPDLQASHSELQVPTPGRAGLLNTSGTKGLECS 517
V L+D L A SPAG D P DG QA+ ++L P RA +N +G + +
Sbjct: 721 VDLQDARTLDGEAGSPAGP--DVLPTDG---QAAAAQLVAGWPARATPVNLAGLATVRRA 775
Query: 518 PSTPT 522
TPT
Sbjct: 776 GQTPT 780
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,240,752
Number of Sequences: 37866
Number of extensions: 1334378
Number of successful extensions: 4367
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 4317
Number of HSP's gapped (non-prelim): 69
length of query: 782
length of database: 18,247,518
effective HSP length: 110
effective length of query: 672
effective length of database: 14,082,258
effective search space: 9463277376
effective search space used: 9463277376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.