Guide to the Human Genome
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Name: LOC647716 Sequence: fasta or formatted (218aa) NCBI GI: 113431083
Description:

PREDICTED: similar to Vac14 homolog

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         10           1
 C cysteine            4.1          9           2
 D aspartate           3.7          8           1
 E glutamate           5.5         12           2
 F phenylalanine       4.1          9           1
 G glycine             2.3          5           1
 H histidine           2.3          5           1
 I isoleucine          3.2          7           1
 K lysine              4.1          9           1
 L leucine            18.8         41           3
 M methionine          2.3          5           1
 N asparagine          5.0         11           2
 P proline             6.0         13           5
 Q glutamine           6.4         14           1
 R arginine            6.9         15           3
 S serine              6.4         14           2
 T threonine           5.5         12           2
 V valine              5.5         12           1
 W tryptophan          0.5          1           1
 Y tyrosine            2.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Vac14 homolog 
VAC14                 0.793   Vac14 homolog 
LOC100290462          0.014   PREDICTED: hypothetical protein XP_002347286 
ARID2                 0.012   AT rich interactive domain 2 (ARID, RFX-like) 
LOC100292592          0.012   PREDICTED: hypothetical protein 
LOC100289939          0.012   PREDICTED: hypothetical protein XP_002347821 
LOC100288866          0.012   PREDICTED: hypothetical protein XP_002343571 
HNRNPC                0.010   heterogeneous nuclear ribonucleoprotein C isoform b...
HNRNPC                0.010   heterogeneous nuclear ribonucleoprotein C isoform a...
HNRNPC                0.010   heterogeneous nuclear ribonucleoprotein C isoform b...
HNRNPC                0.010   heterogeneous nuclear ribonucleoprotein C isoform a...
CARD6                 0.010   caspase recruitment domain family, member 6 
LOC100130599          0.007   PREDICTED: hypothetical protein 
ZFHX3                 0.007   AT-binding transcription factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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