Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TOR1AIP1 Sequence: fasta or formatted (583aa) NCBI GI: 39753957
Description:

lamina-associated polypeptide 1B

Referenced in:

Additional Brain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         38           2
 C cysteine            0.5          3           1
 D aspartate           5.1         30           2
 E glutamate           8.7         51           3
 F phenylalanine       3.4         20           2
 G glycine             4.6         27           2
 H histidine           1.7         10           1
 I isoleucine          2.6         15           1
 K lysine              5.0         29           2
 L leucine             7.5         44           3
 M methionine          1.0          6           1
 N asparagine          3.6         21           1
 P proline             5.8         34           2
 Q glutamine           7.2         42           3
 R arginine            9.3         54           2
 S serine             11.3         66           3
 T threonine           6.3         37           2
 V valine              5.8         34           2
 W tryptophan          1.4          8           2
 Y tyrosine            2.4         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lamina-associated polypeptide 1B 
TOR1AIP2              0.237   torsin A interacting protein 2 
FSCB                  0.019   fibrous sheath CABYR binding protein 
DMP1                  0.016   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.016   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
SRRM2                 0.015   splicing coactivator subunit SRm300 
LOC100286959          0.015   PREDICTED: hypothetical protein XP_002343921 
LOC100170229          0.014   hypothetical protein LOC100170229 
MLLT1                 0.014   myeloid/lymphoid or mixed-lineage leukemia (trithora...
ATRX                  0.014   transcriptional regulator ATRX isoform 2 
ATRX                  0.014   transcriptional regulator ATRX isoform 1 
PNN                   0.014   pinin, desmosome associated protein 
MYST3                 0.014   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.014   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.014   MYST histone acetyltransferase (monocytic leukemia)...
MSN                   0.013   moesin 
TCHH                  0.013   trichohyalin 
TAOK2                 0.013   TAO kinase 2 isoform 1 
C2orf21               0.013   chromosome 2 open reading frame 21 isoform 1 
TAOK1                 0.012   TAO kinase 1 
PPIG                  0.012   peptidylprolyl isomerase G 
PRR12                 0.012   proline rich 12 
CDC2L1                0.012   cell division cycle 2-like 1 (PITSLRE proteins) isof...
ZC3H13                0.012   zinc finger CCCH-type containing 13 
LOC100133758          0.011   PREDICTED: hypothetical protein, partial 
RASAL2                0.011   RAS protein activator like 2 isoform 2 
RASAL2                0.011   RAS protein activator like 2 isoform 1 
DNMT1                 0.011   DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho...
RNF20                 0.011   ring finger protein 20 
NIPBL                 0.011   delangin isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press