Guide to the Human Genome
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Name: TOR1AIP2 Sequence: fasta or formatted (470aa) NCBI GI: 21450775
Description:

torsin A interacting protein 2

Referenced in:

Additional Brain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         39           2
 C cysteine            0.9          4           1
 D aspartate           6.6         31           1
 E glutamate           9.4         44           3
 F phenylalanine       3.4         16           1
 G glycine             6.4         30           2
 H histidine           3.6         17           2
 I isoleucine          2.8         13           2
 K lysine              6.0         28           2
 L leucine             8.7         41           2
 M methionine          0.6          3           1
 N asparagine          3.4         16           1
 P proline             6.2         29           2
 Q glutamine           6.0         28           2
 R arginine            3.0         14           3
 S serine             11.1         52           3
 T threonine           5.3         25           2
 V valine              6.0         28           2
 W tryptophan          1.1          5           1
 Y tyrosine            1.5          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   torsin A interacting protein 2 
TOR1AIP1              0.293   lamina-associated polypeptide 1B 
DSPP                  0.026   dentin sialophosphoprotein preproprotein 
IWS1                  0.024   IWS1 homolog 
MDN1                  0.022   MDN1, midasin homolog 
DMP1                  0.018   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.018   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
TGOLN2                0.017   trans-golgi network protein 2 
LOC100129509          0.016   PREDICTED: hypothetical protein 
LOC100129509          0.016   PREDICTED: hypothetical protein 
SRCAP                 0.016   Snf2-related CBP activator protein 
ACRC                  0.016   ACRC protein 
NEFH                  0.015   neurofilament, heavy polypeptide 200kDa 
SMTNL1                0.015   smoothelin-like 1 
BIN1                  0.013   bridging integrator 1 isoform 6 
SMARCE1               0.013   SWI/SNF-related matrix-associated actin-dependent re...
C1orf87               0.013   hypothetical protein LOC127795 
BASP1                 0.013   brain abundant, membrane attached signal protein 1 [...
SYNE2                 0.013   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.013   spectrin repeat containing, nuclear envelope 2 isof...
BAZ2B                 0.013   bromodomain adjacent to zinc finger domain, 2B [Homo...
NCOR2                 0.012   nuclear receptor co-repressor 2 isoform 1 
BIN1                  0.012   bridging integrator 1 isoform 4 
MATR3                 0.012   matrin 3 
MATR3                 0.012   matrin 3 
PCLO                  0.012   piccolo isoform 2 
PCLO                  0.012   piccolo isoform 1 
FGD5                  0.012   FYVE, RhoGEF and PH domain containing 5 
EIF3B                 0.012   eukaryotic translation initiation factor 3, subunit ...
EIF3B                 0.012   eukaryotic translation initiation factor 3, subunit ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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