Search of human proteins with 38348390

Search of human proteins with 38348390

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|38348390 family with sequence similarity 89, member A [Homo
sapiens]
         (184 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|38348390 family with sequence similarity 89, member A [Homo s...   371   e-103
gi|149192858 family with sequence similarity 89, member B isofor...   134   6e-32
gi|22779873 family with sequence similarity 89, member B isoform...   100   1e-21
gi|149192853 family with sequence similarity 89, member B isofor...    82   2e-16
gi|42822876 hypothetical protein LOC286343 [Homo sapiens]              42   3e-04
gi|119395716 forkhead box C1 [Homo sapiens]                            37   0.007
gi|26667177 mitochondrial ribosomal protein L46 [Homo sapiens]         35   0.036
gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]            34   0.081
gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo ...    34   0.081
gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo ...    34   0.081
gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]              33   0.14 
gi|23821044 zinc finger/RING finger 2 [Homo sapiens]                   32   0.31 
gi|122937480 Ras association (RalGDS/AF-6) domain family (N-term...    32   0.31 
gi|55743149 WD repeat domain 17 isoform 2 [Homo sapiens]               31   0.53 
gi|31317311 WD repeat domain 17 isoform 1 [Homo sapiens]               31   0.53 
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]    31   0.53 
gi|24430190 keratin 15 [Homo sapiens]                                  31   0.69 
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      31   0.69 
gi|18641360 collectin sub-family member 12 [Homo sapiens]              31   0.69 
gi|150417999 ubiquitin-conjugating enzyme E2Z [Homo sapiens]           31   0.69 
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     30   0.90 
gi|116812616 RecQ protein-like 4 [Homo sapiens]                        30   0.90 
gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]     30   0.90 
gi|66346685 SERPINE1 mRNA binding protein 1 isoform 4 [Homo sapi...    30   1.2  
gi|66346683 SERPINE1 mRNA binding protein 1 isoform 3 [Homo sapi...    30   1.2  
gi|66346681 SERPINE1 mRNA binding protein 1 isoform 2 [Homo sapi...    30   1.2  
gi|66346679 SERPINE1 mRNA binding protein 1 isoform 1 [Homo sapi...    30   1.2  
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]      30   1.2  
gi|122937239 zinc finger CCCH-type domain containing 5 [Homo sap...    30   1.2  
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    30   1.5  

>gi|38348390 family with sequence similarity 89, member A [Homo
           sapiens]
          Length = 184

 Score =  371 bits (952), Expect = e-103
 Identities = 184/184 (100%), Positives = 184/184 (100%)

Query: 1   MSGARAAPGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRI 60
           MSGARAAPGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRI
Sbjct: 1   MSGARAAPGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRI 60

Query: 61  QDELSRGGPGGGGARAAALPAKPPNLDAALALLRKEMVGLRQLDMSLLCQLYSLYESIQE 120
           QDELSRGGPGGGGARAAALPAKPPNLDAALALLRKEMVGLRQLDMSLLCQLYSLYESIQE
Sbjct: 61  QDELSRGGPGGGGARAAALPAKPPNLDAALALLRKEMVGLRQLDMSLLCQLYSLYESIQE 120

Query: 121 YKGACQAASSPDCTYALENGFFDEEEEYFQEQNSLHDRRDRGPPRDLSLPVSSLSSSDWI 180
           YKGACQAASSPDCTYALENGFFDEEEEYFQEQNSLHDRRDRGPPRDLSLPVSSLSSSDWI
Sbjct: 121 YKGACQAASSPDCTYALENGFFDEEEEYFQEQNSLHDRRDRGPPRDLSLPVSSLSSSDWI 180

Query: 181 LESI 184
           LESI
Sbjct: 181 LESI 184


>gi|149192858 family with sequence similarity 89, member B isoform 1
           [Homo sapiens]
          Length = 189

 Score =  134 bits (336), Expect = 6e-32
 Identities = 85/158 (53%), Positives = 98/158 (62%), Gaps = 29/158 (18%)

Query: 7   APGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRIQDELSR 66
           APG AG        + GLPPLP+ LSGLL+ ASGG     WR LER+Y+Q+SRI DELSR
Sbjct: 9   APGGAG------CALAGLPPLPRGLSGLLN-ASGGS----WRELERVYSQRSRIHDELSR 57

Query: 67  G-----GP----GGGGARAAALPAKPPNLDAALALLRKEMVGLRQLDMSLLCQLYSLYES 117
                 GP    G   A  AA P +P NLD+ALA LRKEMVGLRQLDMSLLCQL+ LYES
Sbjct: 58  AARAPDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEMVGLRQLDMSLLCQLWGLYES 117

Query: 118 IQEYKGACQAAS---------SPDCTYALENGFFDEEE 146
           IQ+YK  CQ  S           D +Y  + G  D+EE
Sbjct: 118 IQDYKHLCQDLSFCQDLSSSLHSDSSYPPDAGLSDDEE 155


>gi|22779873 family with sequence similarity 89, member B isoform 2
           [Homo sapiens]
          Length = 176

 Score = 99.8 bits (247), Expect = 1e-21
 Identities = 72/158 (45%), Positives = 85/158 (53%), Gaps = 42/158 (26%)

Query: 7   APGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRIQDELSR 66
           APG AG        + GLPPLP+ LSGLL+ ASGG     WR LER+Y+Q+SRI DELSR
Sbjct: 9   APGGAG------CALAGLPPLPRGLSGLLN-ASGGS----WRELERVYSQRSRIHDELSR 57

Query: 67  G-----GP----GGGGARAAALPAKPPNLDAALALLRKEMVGLRQLDMSLLCQLYSLYES 117
                 GP    G   A  AA P +P NLD+ALA LRKEM             L+ LYES
Sbjct: 58  AARAPDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEM-------------LWGLYES 104

Query: 118 IQEYKGACQAAS---------SPDCTYALENGFFDEEE 146
           IQ+YK  CQ  S           D +Y  + G  D+EE
Sbjct: 105 IQDYKHLCQDLSFCQDLSSSLHSDSSYPPDAGLSDDEE 142


>gi|149192853 family with sequence similarity 89, member B isoform
          3 [Homo sapiens]
          Length = 154

 Score = 82.4 bits (202), Expect = 2e-16
 Identities = 54/101 (53%), Positives = 63/101 (62%), Gaps = 20/101 (19%)

Query: 7  APGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRIQDELSR 66
          APG AG        + GLPPLP+ LSGLL+ ASGG     WR LER+Y+Q+SRI DELSR
Sbjct: 9  APGGAG------CALAGLPPLPRGLSGLLN-ASGGS----WRELERVYSQRSRIHDELSR 57

Query: 67 G-----GP----GGGGARAAALPAKPPNLDAALALLRKEMV 98
                GP    G   A  AA P +P NLD+ALA LRKEM+
Sbjct: 58 AARAPDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEML 98


>gi|42822876 hypothetical protein LOC286343 [Homo sapiens]
          Length = 228

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 36/108 (33%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 16  VRGLRVDGLPPLPKSLS-GLLHSASGGGASGGWRHLERLYAQKSRIQDELSRGGPGGGGA 74
           VR LR  G  P+P+         + GGG  GG       Y          S   P  G  
Sbjct: 25  VRSLR--GEEPVPRERDRDPCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSP 82

Query: 75  RAAALPAKPPNLDAALALLRKEMVGLRQLDMSLLCQLYSLYESIQEYK 122
           R +   A    L+  L LLR+EMV LR  D+ L+ QL  + ESI+  K
Sbjct: 83  RGSHSSALE-RLETKLHLLRQEMVNLRATDVRLMRQLLVINESIESIK 129


>gi|119395716 forkhead box C1 [Homo sapiens]
          Length = 553

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 5   RAAPGAAGNGAVRGLRVD-GLPPLPKSLSGLLHSASGGGASGGWR--------HLERLYA 55
           + APG AG  AV     D  LPP+  S S  L    GGG  GG +        H  RL +
Sbjct: 413 QGAPGGAGGSAVDDPLPDYSLPPVTSSSSSSLSHGGGGGGGGGGQEAGHHPAAHQGRLTS 472

Query: 56  -QKSRIQDELSRGGPGGGGARAAALPAKPPNLDAALALLRKEMVGL 100
              ++   +L         A AA  P +  N  +   +   + +GL
Sbjct: 473 WYLNQAGGDLGHLASAAAAAAAAGYPGQQQNFHSVREMFESQRIGL 518


>gi|26667177 mitochondrial ribosomal protein L46 [Homo sapiens]
          Length = 279

 Score = 35.0 bits (79), Expect = 0.036
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 42  GASGGWRHLERLYAQKSRIQDELSRGGPGGGGARAAALPA----KPPNLDAALALLRKEM 97
           G +GGWR  ERL+A     +       P   G+    L A    +PP +   L  L++EM
Sbjct: 11  GVAGGWRRFERLWAGSLSSRSLALAAAPSSNGSPWRLLGALCLQRPPVVSKPLTPLQEEM 70

Query: 98  VGLRQLDMSLLCQLYSLYE 116
             L Q  + +   LYS +E
Sbjct: 71  ASLLQ-QIEIERSLYSDHE 88


>gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 297

 Score = 33.9 bits (76), Expect = 0.081
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 2   SGARAAPGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRIQ 61
           +G R+    AG    RG R    P    ++ G  H   G G  GGWR   R   +     
Sbjct: 180 AGGRSHVAPAGARPARGARAAEHP----AVGGRGHGPGGHGC-GGWRWPGRRRWRGLAPG 234

Query: 62  DELSRGGPGGGGARAAALPAKPPNLDAALAL 92
           +E + G  G GG  AAA  A+ P  ++   L
Sbjct: 235 EEANEGAVGVGGGSAAASLARGPRSESGRGL 265


>gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo
           sapiens]
          Length = 446

 Score = 33.9 bits (76), Expect = 0.081
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 2   SGARAAPGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRIQ 61
           +G R+    AG    RG R    P    ++ G  H   G G  GGWR   R   +     
Sbjct: 329 AGGRSHVAPAGARPARGARAAEHP----AVGGRGHGPGGHGC-GGWRWPGRRRWRGLAPG 383

Query: 62  DELSRGGPGGGGARAAALPAKPPNLDAALAL 92
           +E + G  G GG  AAA  A+ P  ++   L
Sbjct: 384 EEANEGAVGVGGGSAAASLARGPRSESGRGL 414


>gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo
           sapiens]
          Length = 446

 Score = 33.9 bits (76), Expect = 0.081
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 2   SGARAAPGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRIQ 61
           +G R+    AG    RG R    P    ++ G  H   G G  GGWR   R   +     
Sbjct: 329 AGGRSHVAPAGARPARGARAAEHP----AVGGRGHGPGGHGC-GGWRWPGRRRWRGLAPG 383

Query: 62  DELSRGGPGGGGARAAALPAKPPNLDAALAL 92
           +E + G  G GG  AAA  A+ P  ++   L
Sbjct: 384 EEANEGAVGVGGGSAAASLARGPRSESGRGL 414


>gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]
          Length = 832

 Score = 33.1 bits (74), Expect = 0.14
 Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 19/102 (18%)

Query: 6   AAPGAAGNGAVRGLRVDGLPPLPKSL-------SGLLHSASGGGASGGWRHLERLYAQKS 58
           A PG  G GA  G     LPP P +L       S    +A G GA G            +
Sbjct: 7   AGPGGCGAGAGAGAGPGALPPQPAALPPAPPQGSPCAAAAGGSGACG----------PAT 56

Query: 59  RIQDELSRGGPGGGGARAAALPAKPPNLDAALALLRKEMVGL 100
            +    +  GPGGGG  +A +  K   L +A    + E +G+
Sbjct: 57  AVAAAGTAEGPGGGG--SARIAVKKAQLRSAPRAKKLEKLGV 96


>gi|23821044 zinc finger/RING finger 2 [Homo sapiens]
          Length = 242

 Score = 32.0 bits (71), Expect = 0.31
 Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 3  GARAAPGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRIQD 62
          GA+ +  AA NG  R      LP    S SG  +  +GGG         R  AQ      
Sbjct: 2  GAKQSGPAAANGRTRAYSGSDLP---SSSSGGANGTAGGGGGARAAAAGRFPAQ----VP 54

Query: 63 ELSRGGPGGGGARAAALPAKP 83
             +    GG A AAA PA P
Sbjct: 55 SAHQPSASGGAAAAAAAPAAP 75


>gi|122937480 Ras association (RalGDS/AF-6) domain family
          (N-terminal) member 10 [Homo sapiens]
          Length = 615

 Score = 32.0 bits (71), Expect = 0.31
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 5  RAAPGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSR 59
          RA  G    GA R LR  GL P P +L     +A G G   GW H+ R   ++SR
Sbjct: 2  RARGGQGARGAAR-LRGAGLGPEPPALPA---TALGLGGGKGWSHVGRSKTRRSR 52


>gi|55743149 WD repeat domain 17 isoform 2 [Homo sapiens]
          Length = 1298

 Score = 31.2 bits (69), Expect = 0.53
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 85   NLDAALALLRKEMVGLRQLDMSLLCQLY-SLYESIQEYKGACQAASSPDCTYALENGFFD 143
            NL A L L    M+   +L +  LC  Y    E I +    C+  +  +C    E    D
Sbjct: 1013 NLAADLLL----MIPDNELHLIKLCAFYPGCTEEINDLHDKCKLPTVEECMQLAETARAD 1068

Query: 144  EEEEYFQEQNSLHDRRDRGPPRDLSLPVSSLSSSDWILESI 184
            +      +   L    ++  P  +S     +SSSDW L++I
Sbjct: 1069 DNIFETVKYYLLSQEPEKALPIGISFVKEYISSSDWTLDTI 1109


>gi|31317311 WD repeat domain 17 isoform 1 [Homo sapiens]
          Length = 1322

 Score = 31.2 bits (69), Expect = 0.53
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 85   NLDAALALLRKEMVGLRQLDMSLLCQLY-SLYESIQEYKGACQAASSPDCTYALENGFFD 143
            NL A L L    M+   +L +  LC  Y    E I +    C+  +  +C    E    D
Sbjct: 1037 NLAADLLL----MIPDNELHLIKLCAFYPGCTEEINDLHDKCKLPTVEECMQLAETARAD 1092

Query: 144  EEEEYFQEQNSLHDRRDRGPPRDLSLPVSSLSSSDWILESI 184
            +      +   L    ++  P  +S     +SSSDW L++I
Sbjct: 1093 DNIFETVKYYLLSQEPEKALPIGISFVKEYISSSDWTLDTI 1133


>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
          Length = 663

 Score = 31.2 bits (69), Expect = 0.53
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 25  PPLPKSLSGLLHSASGGGASGGWRHLERLYAQK---SRIQDELSRGGPGGG----GARAA 77
           PP P +LSG   + SGGG S G  H      ++   +        G P GG    G  + 
Sbjct: 169 PPPPPALSGYTTTNSGGGGSSGKGHSRDFVLRRDLSATAPAAAMHGAPLGGEQRSGTGSP 228

Query: 78  ALPAKPPN 85
             PA PP+
Sbjct: 229 QHPAPPPH 236


>gi|24430190 keratin 15 [Homo sapiens]
          Length = 456

 Score = 30.8 bits (68), Expect = 0.69
 Identities = 38/159 (23%), Positives = 58/159 (36%), Gaps = 41/159 (25%)

Query: 2   SGARAAPGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRIQ 61
           S AR     +G G   G+RV G      S+ G      GGG  GG+              
Sbjct: 47  SSARFVSSGSGGGYGGGMRVCGFGGGAGSVFG---GGFGGGVGGGF-------------- 89

Query: 62  DELSRGGPGG--GGARAAALPAKPPNLDAALALLRKEMVGLRQLDMSLLCQLYSLYESIQ 119
                GG GG  GG  +        NL+  LA    ++  L + +  L  +++  Y+   
Sbjct: 90  ----GGGFGGGDGGLLSGNEKITMQNLNDRLASYLDKVRALEEANADLEVKIHDWYQK-- 143

Query: 120 EYKGACQAASSPDCTYALENGFFDEEEEYFQEQNSLHDR 158
                 Q  +SP+C Y+          +YF+    L D+
Sbjct: 144 ------QTPTSPECDYS----------QYFKTIEELRDK 166


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 30.8 bits (68), Expect = 0.69
 Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 2   SGARAAPGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRIQ 61
           +G +  PG  G G  +G   D  PP P+ L GL  +    G +G          +     
Sbjct: 614 TGPQGPPGPTGPGGDKG---DTGPPGPQGLQGLPGTGGPPGENGK-------PGEPGPKG 663

Query: 62  DELSRGGPGGGGARAAALPAKPPNLDAALAL 92
           D  + G PGG G   A     PP L  A  L
Sbjct: 664 DAGAPGAPGGKGDAGAPGERGPPGLAGAPGL 694


>gi|18641360 collectin sub-family member 12 [Homo sapiens]
          Length = 742

 Score = 30.8 bits (68), Expect = 0.69
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 3   GARAAPGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRIQD 62
           G++  PG  GN   +G + +  PP P    G +  A   G  GG          K     
Sbjct: 455 GSQGPPGPTGNKGQKGEKGEPGPPGPAGERGPIGPAGPPGERGG-------KGSKGSQGP 507

Query: 63  ELSRGGPGGGGARAAALPAKPP 84
           + SRG PG  G +  +    PP
Sbjct: 508 KGSRGSPGKPGPQGPSGDPGPP 529


>gi|150417999 ubiquitin-conjugating enzyme E2Z [Homo sapiens]
          Length = 354

 Score = 30.8 bits (68), Expect = 0.69
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 20/90 (22%)

Query: 4  ARAAPGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRIQDE 63
          A A  GAAG GA              S++G++   SG G   G   L  ++A  +     
Sbjct: 10 ATAGAGAAGPGA-------------SSVAGVV-GVSGSGGGFGPPFLPDVWAAAA----- 50

Query: 64 LSRGGPGGGGARAAALPAKPPNLDAALALL 93
           + GG GG G+  A LP  PP+  A  A L
Sbjct: 51 -AAGGAGGPGSGLAPLPGLPPSAAAHGAAL 79


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 30.4 bits (67), Expect = 0.90
 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 11/91 (12%)

Query: 1   MSGARAAPGAAGNG---------AVRGLRVDGLPPLPKSLSGLLHSASGGGASG--GWRH 49
           ++GAR APG  GN           V+G + +  PP P    GL   +   G  G  G R 
Sbjct: 515 LAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERG 574

Query: 50  LERLYAQKSRIQDELSRGGPGGGGARAAALP 80
           L   +           RG PG  GA     P
Sbjct: 575 LHGEFGLPGPAGPRGERGPPGESGAAGPTGP 605


>gi|116812616 RecQ protein-like 4 [Homo sapiens]
          Length = 1208

 Score = 30.4 bits (67), Expect = 0.90
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 38  ASGGGASGGWRHLERLYAQKSRIQDELSRGGPGGGGARAAALPAKPP 84
           +S GG    W   E  +   +++Q E S+ GP   GA A A+   PP
Sbjct: 255 SSSGGEKRRWN--EEPWESPAQVQQESSQAGPPSEGAGAVAVEEDPP 299


>gi|23111062 splicing factor, arginine/serine-rich 8 [Homo
          sapiens]
          Length = 951

 Score = 30.4 bits (67), Expect = 0.90
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 42 GASGGWRHLERLYAQKSRIQDELSRGGPGGGGARAAAL 79
          GASGG    ER    KS  ++E   GG GGGG+R   L
Sbjct: 3  GASGGRAKPER----KSGAKEEAGPGGAGGGGSRVELL 36


>gi|66346685 SERPINE1 mRNA binding protein 1 isoform 4 [Homo
          sapiens]
          Length = 387

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query: 63 ELSRGGPGGGGARAAALPAKPPNLDAALALLRKE 96
          E   GG GG GA++AA  A   N +AA   LRKE
Sbjct: 40 EAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKE 73


>gi|66346683 SERPINE1 mRNA binding protein 1 isoform 3 [Homo
          sapiens]
          Length = 393

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query: 63 ELSRGGPGGGGARAAALPAKPPNLDAALALLRKE 96
          E   GG GG GA++AA  A   N +AA   LRKE
Sbjct: 40 EAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKE 73


>gi|66346681 SERPINE1 mRNA binding protein 1 isoform 2 [Homo
          sapiens]
          Length = 402

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query: 63 ELSRGGPGGGGARAAALPAKPPNLDAALALLRKE 96
          E   GG GG GA++AA  A   N +AA   LRKE
Sbjct: 40 EAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKE 73


>gi|66346679 SERPINE1 mRNA binding protein 1 isoform 1 [Homo
          sapiens]
          Length = 408

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query: 63 ELSRGGPGGGGARAAALPAKPPNLDAALALLRKE 96
          E   GG GG GA++AA  A   N +AA   LRKE
Sbjct: 40 EAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKE 73


>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
          Length = 409

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 24  LPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRIQDELSRGGPGGGGARA---AALP 80
           + P   S S   ++  GGG  GG            R     S G  GGGG+ A   A LP
Sbjct: 40  IAPSASSPSSSSNAGGGGGGGGGGG------GGGGRSSSSSSSGSSGGGGSEAMRRACLP 93

Query: 81  AKPPNLDAAL 90
             P N+   L
Sbjct: 94  TPPSNIFGGL 103


>gi|122937239 zinc finger CCCH-type domain containing 5 [Homo
          sapiens]
          Length = 886

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 24 LPPLPKSLSGLL-HSASGGGASG---GWRHLERLYAQKSRIQDELSRGGPGGGGARAAAL 79
          LP  P ++ G+   S  G GA G   G R L        R +D+    GPG GG+ A++ 
Sbjct: 32 LPATPAAVWGVFTFSWRGAGALGPRRGPRRLNNKRGAAKRQEDKTMSKGPGPGGSAASSA 91

Query: 80 P 80
          P
Sbjct: 92 P 92


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 1   MSGARAAPGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRI 60
           + G R  PG  G    +G      PP  +   GL       GA+G    +      +  +
Sbjct: 715 LQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAG----IAGPKGDRGDV 770

Query: 61  QDELSRGGPGGGGARAAALPAKPP 84
            ++   G PG  G R    P  PP
Sbjct: 771 GEKGPEGAPGKDGGRGLTGPIGPP 794


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,629,728
Number of Sequences: 37866
Number of extensions: 431762
Number of successful extensions: 1867
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 1735
Number of HSP's gapped (non-prelim): 197
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.