Guide to the Human Genome
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Name: C3orf67 Sequence: fasta or formatted (563aa) NCBI GI: 38348244
Description:

hypothetical protein LOC200844

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         22           2
 C cysteine            2.3         13           1
 D aspartate           6.4         36           2
 E glutamate           8.0         45           3
 F phenylalanine       2.5         14           1
 G glycine             4.6         26           2
 H histidine           2.5         14           1
 I isoleucine          4.6         26           2
 K lysine              4.6         26           1
 L leucine             8.0         45           3
 M methionine          2.0         11           1
 N asparagine          5.9         33           3
 P proline             7.3         41           3
 Q glutamine           6.2         35           2
 R arginine            4.8         27           3
 S serine             12.8         72           3
 T threonine           6.0         34           3
 V valine              4.6         26           2
 W tryptophan          1.2          7           1
 Y tyrosine            1.8         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC200844 
BRDT                  0.018   testis-specific bromodomain protein 
BRDT                  0.018   testis-specific bromodomain protein 
DSPP                  0.015   dentin sialophosphoprotein preproprotein 
AFF1                  0.012   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
MLL                   0.012   myeloid/lymphoid or mixed-lineage leukemia protein [...
SLC39A10              0.012   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.012   solute carrier family 39 (zinc transporter), member ...
DNTTIP2               0.011   deoxynucleotidyltransferase, terminal, interacting p...
BSN                   0.011   bassoon protein 
RBM10                 0.010   RNA binding motif protein 10 isoform 1 
RBM10                 0.010   RNA binding motif protein 10 isoform 2 
DACH1                 0.010   dachshund homolog 1 isoform c 
FNBP4                 0.009   formin binding protein 4 
SMN2                  0.009   survival of motor neuron 2, centromeric isoform d [H...
SMN2                  0.009   survival of motor neuron 2, centromeric isoform a [H...
SMN1                  0.009   survival of motor neuron 1, telomeric isoform d [Homo...
SYTL2                 0.009   synaptotagmin-like 2 isoform d 
SYTL2                 0.009   synaptotagmin-like 2 isoform c 
MLL5                  0.009   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.009   myeloid/lymphoid or mixed-lineage leukemia 5 
PODXL2                0.009   podocalyxin-like 2 
BCL11B                0.008   B-cell CLL/lymphoma 11B isoform 1 
CASS4                 0.008   HEF-like protein 
BCL11B                0.008   B-cell CLL/lymphoma 11B isoform 2 
HHIPL1                0.008   HHIP-like protein 1 isoform a 
BOD1L                 0.008   biorientation of chromosomes in cell division 1-like...
TEX2                  0.008   testis expressed sequence 2 
LOC100287045          0.007   PREDICTED: hypothetical protein XP_002342469 isofor...
LOC100287045          0.007   PREDICTED: hypothetical protein XP_002342468 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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