Guide to the Human Genome
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Name: SUMF1 Sequence: fasta or formatted (374aa) NCBI GI: 38202250
Description:

sulfatase modifying factor 1

Referenced in:

Phosphatases and Sulfatases
Additional Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         40           3
 C cysteine            2.9         11           1
 D aspartate           4.3         16           2
 E glutamate           5.6         21           2
 F phenylalanine       3.2         12           1
 G glycine            11.0         41           2
 H histidine           3.2         12           2
 I isoleucine          1.9          7           1
 K lysine              3.5         13           2
 L leucine             7.2         27           6
 M methionine          1.9          7           1
 N asparagine          4.3         16           1
 P proline             7.8         29           2
 Q glutamine           3.5         13           2
 R arginine            5.1         19           2
 S serine              6.4         24           2
 T threonine           5.3         20           1
 V valine              5.6         21           1
 W tryptophan          3.2         12           2
 Y tyrosine            3.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sulfatase modifying factor 1 
SUMF2                 0.314   sulfatase modifying factor 2 isoform b precursor [H...
SUMF2                 0.277   sulfatase modifying factor 2 isoform c precursor [H...
SUMF2                 0.252   sulfatase modifying factor 2 isoform g 
SUMF2                 0.248   sulfatase modifying factor 2 isoform e precursor [H...
SUMF2                 0.080   sulfatase modifying factor 2 isoform d precursor [H...
CECR6                 0.013   cat eye syndrome chromosome region, candidate 6 isof...
ASH2L                 0.012   ash2-like isoform a 
KIAA1468              0.010   hypothetical protein LOC57614 
LOC100290733          0.010   PREDICTED: hypothetical protein XP_002347876 
GFI1                  0.009   growth factor independent 1 
GFI1                  0.009   growth factor independent 1 
GFI1                  0.009   growth factor independent 1 
MNX1                  0.009   homeo box HB9 
LOC100292443          0.009   PREDICTED: hypothetical protein 
LMTK3                 0.009   lemur tyrosine kinase 3 
COL4A6                0.009   type IV alpha 6 collagen isoform B precursor 
KRTAP19-7             0.009   keratin associated protein 19-7 
KRTAP5-2              0.009   keratin associated protein 5-2 
NACAD                 0.008   NAC alpha domain containing 
HOXD4                 0.008   homeobox D4 
COL3A1                0.008   collagen type III alpha 1 preproprotein 
PURA                  0.008   purine-rich element binding protein A 
EOMES                 0.008   eomesodermin 
NACAD                 0.008   PREDICTED: NAC alpha domain containing 
NACAD                 0.008   PREDICTED: NAC alpha domain containing 
NACAD                 0.008   PREDICTED: NAC alpha domain containing 
NACAD                 0.008   PREDICTED: NAC alpha domain containing 
NAV3                  0.008   neuron navigator 3 
COL4A1                0.008   alpha 1 type IV collagen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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