Guide to the Human Genome
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Name: LOC100290733 Sequence: fasta or formatted (74aa) NCBI GI: 239751502
Description:

PREDICTED: hypothetical protein XP_002347876

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.2         12           3
 C cysteine            1.4          1           1
 D aspartate           0.0          0           0
 E glutamate           4.1          3           2
 F phenylalanine       2.7          2           1
 G glycine             8.1          6           1
 H histidine           0.0          0           0
 I isoleucine          1.4          1           1
 K lysine              1.4          1           1
 L leucine            12.2          9           2
 M methionine          1.4          1           1
 N asparagine          2.7          2           1
 P proline            10.8          8           2
 Q glutamine           4.1          3           1
 R arginine            9.5          7           3
 S serine             13.5         10           2
 T threonine           5.4          4           1
 V valine              5.4          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347876 
LOC100292122          0.555   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.555   PREDICTED: hypothetical protein XP_002344191 
SUMF1                 0.067   sulfatase modifying factor 1 
LOC100293492          0.059   PREDICTED: hypothetical protein 
LOC729162             0.059   PREDICTED: similar to hCG1981372 
LOC729162             0.059   PREDICTED: similar to hCG1981372 
LOC389906             0.059   PREDICTED: similar to Serine/threonine-protein kina...
SPCS1                 0.017   signal peptidase complex subunit 1 homolog 
LOC100292721          0.017   PREDICTED: hypothetical protein 
LOC100128370          0.008   PREDICTED: hypothetical protein 
LOC100128370          0.008   PREDICTED: hypothetical protein 
LOC100130360          0.008   PREDICTED: hypothetical protein 
KIAA1539              0.008   hypothetical protein LOC80256 
FAM102B               0.008   hypothetical protein LOC284611 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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