Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SUMF2 Sequence: fasta or formatted (358aa) NCBI GI: 194248090
Description:

sulfatase modifying factor 2 isoform e precursor

Referenced in:

Phosphatases and Sulfatases
Additional Protein Modifications

Other entries for this name:
alt prot [236aa] sulfatase modifying factor 2 isoform d precursor
alt prot [305aa] sulfatase modifying factor 2 isoform c precursor
alt prot [320aa] sulfatase modifying factor 2 isoform b precursor
alt prot [213aa] sulfatase modifying factor 2 isoform g
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         33           2
 C cysteine            1.4          5           1
 D aspartate           3.1         11           1
 E glutamate           5.0         18           3
 F phenylalanine       5.6         20           1
 G glycine            10.9         39           2
 H histidine           2.2          8           1
 I isoleucine          1.4          5           1
 K lysine              5.0         18           2
 L leucine             8.7         31           2
 M methionine          2.0          7           1
 N asparagine          3.6         13           2
 P proline             6.7         24           1
 Q glutamine           5.6         20           1
 R arginine            7.0         25           2
 S serine              7.3         26           2
 T threonine           3.9         14           2
 V valine              6.4         23           1
 W tryptophan          3.4         12           2
 Y tyrosine            1.7          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sulfatase modifying factor 2 isoform e precursor [H... 
SUMF2                 0.689   sulfatase modifying factor 2 isoform b precursor [H...
SUMF2                 0.627   sulfatase modifying factor 2 isoform c precursor [H...
SUMF2                 0.394   sulfatase modifying factor 2 isoform g 
SUMF2                 0.337   sulfatase modifying factor 2 isoform d precursor [H...
SUMF1                 0.267   sulfatase modifying factor 1 
COL13A1               0.011   alpha 1 type XIII collagen isoform 16 
COL13A1               0.011   alpha 1 type XIII collagen isoform 11 
COL13A1               0.011   alpha 1 type XIII collagen isoform 4 
LOC100292217          0.010   PREDICTED: hypothetical protein 
LOC100288033          0.010   PREDICTED: hypothetical protein 
LOC100288033          0.010   PREDICTED: hypothetical protein XP_002343859 
NRK                   0.010   Nik related kinase 
COL4A1                0.008   alpha 1 type IV collagen preproprotein 
EWSR1                 0.007   Ewing sarcoma breakpoint region 1 isoform 4 
COL7A1                0.007   alpha 1 type VII collagen precursor 
NR3C1                 0.007   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 0.007   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 0.007   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 0.007   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 0.007   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 0.007   nuclear receptor subfamily 3, group C, member 1 isofo...
NR3C1                 0.007   nuclear receptor subfamily 3, group C, member 1 isof...
LIMD1                 0.007   LIM domains containing 1 
LOC729722             0.007   PREDICTED: ankyrin repeat domain-containing protein...
LOC729722             0.007   PREDICTED: ankyrin repeat domain-containing protein...
COL17A1               0.007   alpha 1 type XVII collagen 
FAM148C               0.007   nuclear localized factor 3 
CRLF1                 0.007   cytokine receptor-like factor 1 
HCN4                  0.006   hyperpolarization activated cyclic nucleotide-gated p...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press