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Search of human proteins with 38146094
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38146094 mediator complex subunit 16 [Homo sapiens]
(877 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38146094 mediator complex subunit 16 [Homo sapiens] 1779 0.0
gi|222080092 WD repeat domain 91 [Homo sapiens] 39 0.016
gi|213021190 transducin beta-like 1X isoform b [Homo sapiens] 36 0.14
gi|213021188 transducin beta-like 1X isoform b [Homo sapiens] 36 0.14
gi|213021186 transducin beta-like 1X isoform a [Homo sapiens] 36 0.14
gi|5032159 transducin beta-like 1X isoform a [Homo sapiens] 36 0.14
gi|31317278 WD repeat domain 20 isoform 3 [Homo sapiens] 36 0.18
gi|31317276 WD repeat domain 20 isoform 4 [Homo sapiens] 36 0.18
gi|31317274 WD repeat domain 20 isoform 1 [Homo sapiens] 36 0.18
gi|31317280 WD repeat domain 20 isoform 2 [Homo sapiens] 36 0.18
gi|5901892 WD repeat and HMG-box DNA binding protein 1 isoform 1... 35 0.23
gi|56550086 WD repeat and HMG-box DNA binding protein 1 isoform ... 35 0.30
gi|19913367 transducin beta-like 1Y [Homo sapiens] 35 0.30
gi|19913365 transducin beta-like 1Y [Homo sapiens] 35 0.30
gi|15150805 transducin beta-like 1Y [Homo sapiens] 35 0.30
gi|89886480 zinedin isoform 2 [Homo sapiens] 35 0.40
gi|89886477 zinedin isoform 1 [Homo sapiens] 35 0.40
gi|50980309 UTP15, U3 small nucleolar ribonucleoprotein, homolog... 34 0.52
gi|46409657 WD repeat domain 56 [Homo sapiens] 34 0.52
gi|55743149 WD repeat domain 17 isoform 2 [Homo sapiens] 34 0.68
gi|31317311 WD repeat domain 17 isoform 1 [Homo sapiens] 34 0.68
gi|41281447 intraflagellar transport 140 [Homo sapiens] 33 0.89
gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo s... 33 1.2
gi|61743971 sec13-like protein isoform 1 [Homo sapiens] 33 1.2
gi|61743969 sec13-like protein isoform 2 [Homo sapiens] 33 1.2
gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens] 33 1.5
gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapi... 33 1.5
gi|53729352 WD repeat-containing protein 1 isoform 2 [Homo sapiens] 32 3.4
gi|9257257 WD repeat-containing protein 1 isoform 1 [Homo sapiens] 32 3.4
gi|149363700 syntaxin binding protein 5-like [Homo sapiens] 32 3.4
>gi|38146094 mediator complex subunit 16 [Homo sapiens]
Length = 877
Score = 1779 bits (4609), Expect = 0.0
Identities = 877/877 (100%), Positives = 877/877 (100%)
Query: 1 MCDLRRPAAGGMMDLAYVCEWEKWSKSTHCPSVPLACAWSCRNLIAFTMDLRSDDQDLTR 60
MCDLRRPAAGGMMDLAYVCEWEKWSKSTHCPSVPLACAWSCRNLIAFTMDLRSDDQDLTR
Sbjct: 1 MCDLRRPAAGGMMDLAYVCEWEKWSKSTHCPSVPLACAWSCRNLIAFTMDLRSDDQDLTR 60
Query: 61 MIHILDTEHPWDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWES 120
MIHILDTEHPWDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWES
Sbjct: 61 MIHILDTEHPWDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWES 120
Query: 121 SVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWI 180
SVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWI
Sbjct: 121 SVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWI 180
Query: 181 AVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQ 240
AVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQ
Sbjct: 181 AVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQ 240
Query: 241 FYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITHLKFLARDMSEQVLLCASS 300
FYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITHLKFLARDMSEQVLLCASS
Sbjct: 241 FYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITHLKFLARDMSEQVLLCASS 300
Query: 301 QTSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPTILKWRILSATNDLDRVSAVALPKLP 360
QTSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPTILKWRILSATNDLDRVSAVALPKLP
Sbjct: 301 QTSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPTILKWRILSATNDLDRVSAVALPKLP 360
Query: 361 ISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTMAVFYSSAAPRPVDEPAMK 420
ISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTMAVFYSSAAPRPVDEPAMK
Sbjct: 361 ISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTMAVFYSSAAPRPVDEPAMK 420
Query: 421 RPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMGHPLEVGLALRHLLFLLEY 480
RPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMGHPLEVGLALRHLLFLLEY
Sbjct: 421 RPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMGHPLEVGLALRHLLFLLEY 480
Query: 481 CMVTGYDWWDILLHVQPSMVQSLVEKLHEEYTRQTAALQQVLSTRILAMKASLCKLSPCT 540
CMVTGYDWWDILLHVQPSMVQSLVEKLHEEYTRQTAALQQVLSTRILAMKASLCKLSPCT
Sbjct: 481 CMVTGYDWWDILLHVQPSMVQSLVEKLHEEYTRQTAALQQVLSTRILAMKASLCKLSPCT 540
Query: 541 VTRVCDYHTKLFLIAISSTLKSLLRPHFLNTPDKSPGDRLTEICTKITDVDIDKVMINLK 600
VTRVCDYHTKLFLIAISSTLKSLLRPHFLNTPDKSPGDRLTEICTKITDVDIDKVMINLK
Sbjct: 541 VTRVCDYHTKLFLIAISSTLKSLLRPHFLNTPDKSPGDRLTEICTKITDVDIDKVMINLK 600
Query: 601 TEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSLLRPGHSFLRDGTSLGMLRELMV 660
TEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSLLRPGHSFLRDGTSLGMLRELMV
Sbjct: 601 TEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSLLRPGHSFLRDGTSLGMLRELMV 660
Query: 661 VIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPASEPDEALVDECCLL 720
VIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPASEPDEALVDECCLL
Sbjct: 661 VIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPASEPDEALVDECCLL 720
Query: 721 PSQLLIPSLDWLPASDGLVSRLQPKQPLRLQFGRAPTLPGSAATLQLDGLARAPGQPKID 780
PSQLLIPSLDWLPASDGLVSRLQPKQPLRLQFGRAPTLPGSAATLQLDGLARAPGQPKID
Sbjct: 721 PSQLLIPSLDWLPASDGLVSRLQPKQPLRLQFGRAPTLPGSAATLQLDGLARAPGQPKID 780
Query: 781 HLRRLHLGACPTEECKACTRCGCVTMLKSPNRTTAVKQWEQRWIKNCLAVEGRGPDACVT 840
HLRRLHLGACPTEECKACTRCGCVTMLKSPNRTTAVKQWEQRWIKNCLAVEGRGPDACVT
Sbjct: 781 HLRRLHLGACPTEECKACTRCGCVTMLKSPNRTTAVKQWEQRWIKNCLAVEGRGPDACVT 840
Query: 841 SRASEEAPAFVQLGPQSTHHSPRTPRSLDHLHPEDRP 877
SRASEEAPAFVQLGPQSTHHSPRTPRSLDHLHPEDRP
Sbjct: 841 SRASEEAPAFVQLGPQSTHHSPRTPRSLDHLHPEDRP 877
>gi|222080092 WD repeat domain 91 [Homo sapiens]
Length = 747
Score = 39.3 bits (90), Expect = 0.016
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 79 EHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLH 138
EHH +I D SG R+ S D DG IK WS N + S + P+++L W
Sbjct: 406 EHHSSIMHCRVDCSGRRVASLDVDGVIKVWSF-----NPIMQTKASSISKSPLLSLEWAT 460
Query: 139 NGVKLAL 145
+L L
Sbjct: 461 KRDRLLL 467
Score = 31.2 bits (69), Expect = 4.4
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 83 AITCLEWDQSGSRLLSADADGQIKCWSMADH-LANSWESSVGSL 125
AI C ++ +G+ L++ ADG I+ + M H A SW + G +
Sbjct: 564 AINCTAFNHNGNLLVTGAADGVIRLFDMQQHECAMSWRAHYGEV 607
>gi|213021190 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 36.2 bits (82), Expect = 0.14
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 74 HSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVA 133
H +PS ++ +T L+W+ +G+ L + DG + W+ +LA++ G PI A
Sbjct: 232 HDVPS--NKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNLASTLGQHKG------PIFA 283
Query: 134 LSWLHNG 140
L W G
Sbjct: 284 LKWNRKG 290
Score = 30.4 bits (67), Expect = 7.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 80 HHEAITCLEWDQSGSRLLSADADGQIKCWSM 110
H + ++WD SG L S D +K WSM
Sbjct: 360 HTNEVNAIKWDPSGMLLASCSDDMTLKIWSM 390
>gi|213021188 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 36.2 bits (82), Expect = 0.14
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 74 HSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVA 133
H +PS ++ +T L+W+ +G+ L + DG + W+ +LA++ G PI A
Sbjct: 232 HDVPS--NKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNLASTLGQHKG------PIFA 283
Query: 134 LSWLHNG 140
L W G
Sbjct: 284 LKWNRKG 290
Score = 30.4 bits (67), Expect = 7.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 80 HHEAITCLEWDQSGSRLLSADADGQIKCWSM 110
H + ++WD SG L S D +K WSM
Sbjct: 360 HTNEVNAIKWDPSGMLLASCSDDMTLKIWSM 390
>gi|213021186 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 36.2 bits (82), Expect = 0.14
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 74 HSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVA 133
H +PS ++ +T L+W+ +G+ L + DG + W+ +LA++ G PI A
Sbjct: 283 HDVPS--NKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNLASTLGQHKG------PIFA 334
Query: 134 LSWLHNG 140
L W G
Sbjct: 335 LKWNRKG 341
Score = 30.4 bits (67), Expect = 7.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 80 HHEAITCLEWDQSGSRLLSADADGQIKCWSM 110
H + ++WD SG L S D +K WSM
Sbjct: 411 HTNEVNAIKWDPSGMLLASCSDDMTLKIWSM 441
>gi|5032159 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 36.2 bits (82), Expect = 0.14
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 74 HSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVA 133
H +PS ++ +T L+W+ +G+ L + DG + W+ +LA++ G PI A
Sbjct: 283 HDVPS--NKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNLASTLGQHKG------PIFA 334
Query: 134 LSWLHNG 140
L W G
Sbjct: 335 LKWNRKG 341
Score = 30.4 bits (67), Expect = 7.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 80 HHEAITCLEWDQSGSRLLSADADGQIKCWSM 110
H + ++WD SG L S D +K WSM
Sbjct: 411 HTNEVNAIKWDPSGMLLASCSDDMTLKIWSM 441
>gi|31317278 WD repeat domain 20 isoform 3 [Homo sapiens]
Length = 508
Score = 35.8 bits (81), Expect = 0.18
Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 20/153 (13%)
Query: 25 SKSTHCPSVPLACAWSCRNLIAFTMD---LRSDDQDLTRMIHILDTEHPWDLHSIPSEHH 81
SKST P + N AF+ D L QD + D+ +LH +
Sbjct: 145 SKSTRNPLLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSV---ELHGTMKSYF 201
Query: 82 EAITCLEWDQSGSRLLSADADGQIKCWSMAD-------HLANSWESSVG------SLVEG 128
+ C+ W G +++ D + WS D H SW S V S+ EG
Sbjct: 202 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFVDCRVIARGHGHKSWVSVVAFDPYTTSVEEG 261
Query: 129 DPIVALSWLHNGVKLALHVEKSGASSFGEKFSR 161
DP + S + LH + A+S + S+
Sbjct: 262 DP-MEFSGSDEDFQDLLHFGRDRANSTQSRLSK 293
>gi|31317276 WD repeat domain 20 isoform 4 [Homo sapiens]
Length = 445
Score = 35.8 bits (81), Expect = 0.18
Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 20/153 (13%)
Query: 25 SKSTHCPSVPLACAWSCRNLIAFTMD---LRSDDQDLTRMIHILDTEHPWDLHSIPSEHH 81
SKST P + N AF+ D L QD + D+ +LH +
Sbjct: 82 SKSTRNPLLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSV---ELHGTMKSYF 138
Query: 82 EAITCLEWDQSGSRLLSADADGQIKCWSMAD-------HLANSWESSVG------SLVEG 128
+ C+ W G +++ D + WS D H SW S V S+ EG
Sbjct: 139 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFVDCRVIARGHGHKSWVSVVAFDPYTTSVEEG 198
Query: 129 DPIVALSWLHNGVKLALHVEKSGASSFGEKFSR 161
DP + S + LH + A+S + S+
Sbjct: 199 DP-MEFSGSDEDFQDLLHFGRDRANSTQSRLSK 230
>gi|31317274 WD repeat domain 20 isoform 1 [Homo sapiens]
Length = 581
Score = 35.8 bits (81), Expect = 0.18
Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 20/153 (13%)
Query: 25 SKSTHCPSVPLACAWSCRNLIAFTMD---LRSDDQDLTRMIHILDTEHPWDLHSIPSEHH 81
SKST P + N AF+ D L QD + D+ +LH +
Sbjct: 206 SKSTRNPLLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSV---ELHGTMKSYF 262
Query: 82 EAITCLEWDQSGSRLLSADADGQIKCWSMAD-------HLANSWESSVG------SLVEG 128
+ C+ W G +++ D + WS D H SW S V S+ EG
Sbjct: 263 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFVDCRVIARGHGHKSWVSVVAFDPYTTSVEEG 322
Query: 129 DPIVALSWLHNGVKLALHVEKSGASSFGEKFSR 161
DP + S + LH + A+S + S+
Sbjct: 323 DP-MEFSGSDEDFQDLLHFGRDRANSTQSRLSK 354
>gi|31317280 WD repeat domain 20 isoform 2 [Homo sapiens]
Length = 569
Score = 35.8 bits (81), Expect = 0.18
Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 20/153 (13%)
Query: 25 SKSTHCPSVPLACAWSCRNLIAFTMD---LRSDDQDLTRMIHILDTEHPWDLHSIPSEHH 81
SKST P + N AF+ D L QD + D+ +LH +
Sbjct: 206 SKSTRNPLLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSV---ELHGTMKSYF 262
Query: 82 EAITCLEWDQSGSRLLSADADGQIKCWSMAD-------HLANSWESSVG------SLVEG 128
+ C+ W G +++ D + WS D H SW S V S+ EG
Sbjct: 263 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFVDCRVIARGHGHKSWVSVVAFDPYTTSVEEG 322
Query: 129 DPIVALSWLHNGVKLALHVEKSGASSFGEKFSR 161
DP + S + LH + A+S + S+
Sbjct: 323 DP-MEFSGSDEDFQDLLHFGRDRANSTQSRLSK 354
>gi|5901892 WD repeat and HMG-box DNA binding protein 1 isoform 1
[Homo sapiens]
Length = 1129
Score = 35.4 bits (80), Expect = 0.23
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 15/144 (10%)
Query: 58 LTRMIHILDTEHPWDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADH-LAN 116
L +++ ++D+ H + L +D L SA DG ++ W ++D A
Sbjct: 117 LVKIVDVMDSSQQKTFRG----HDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAI 172
Query: 117 SWE--SSVGSLVEGDPIVALSWL-HNGVKLALHVEKS----GASSFGEKF--SRVKFSPS 167
SW ++ I L+W +G LA+ VEKS S+ +F S S +
Sbjct: 173 SWPLLQKCNDVINAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQT 232
Query: 168 LTLFGGKPMEGWIAV-TVSGLVTV 190
L + P ++A +++GL+ V
Sbjct: 233 LNIVTWSPCGQYLAAGSINGLIIV 256
>gi|56550086 WD repeat and HMG-box DNA binding protein 1 isoform 2
[Homo sapiens]
Length = 1006
Score = 35.0 bits (79), Expect = 0.30
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 80 HHEAITCLEWDQSGSRLLSADADGQIKCWSMADH-LANSWE--SSVGSLVEGDPIVALSW 136
H + L +D L SA DG ++ W ++D A SW ++ I L+W
Sbjct: 12 HDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSICRLAW 71
Query: 137 L-HNGVKLALHVEKS----GASSFGEKF--SRVKFSPSLTLFGGKPMEGWIAV-TVSGLV 188
+G LA+ VEKS S+ +F S S +L + P ++A +++GL+
Sbjct: 72 QPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQYLAAGSINGLI 131
Query: 189 TV 190
V
Sbjct: 132 IV 133
>gi|19913367 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 35.0 bits (79), Expect = 0.30
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 74 HSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVA 133
H +PS ++ +T L+W+ G+ L DG + W+ +LA++ G PI A
Sbjct: 230 HDVPS--NKDVTSLDWNSDGTLLAMGSYDGFARIWTENGNLASTLGQHKG------PIFA 281
Query: 134 LSWLHNG 140
L W G
Sbjct: 282 LKWNKKG 288
Score = 30.4 bits (67), Expect = 7.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 80 HHEAITCLEWDQSGSRLLSADADGQIKCWSM 110
H + ++WD SG L S D +K WSM
Sbjct: 358 HTNEVNAIKWDPSGMLLASCSDDMTLKIWSM 388
>gi|19913365 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 35.0 bits (79), Expect = 0.30
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 74 HSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVA 133
H +PS ++ +T L+W+ G+ L DG + W+ +LA++ G PI A
Sbjct: 230 HDVPS--NKDVTSLDWNSDGTLLAMGSYDGFARIWTENGNLASTLGQHKG------PIFA 281
Query: 134 LSWLHNG 140
L W G
Sbjct: 282 LKWNKKG 288
Score = 30.4 bits (67), Expect = 7.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 80 HHEAITCLEWDQSGSRLLSADADGQIKCWSM 110
H + ++WD SG L S D +K WSM
Sbjct: 358 HTNEVNAIKWDPSGMLLASCSDDMTLKIWSM 388
>gi|15150805 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 35.0 bits (79), Expect = 0.30
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 74 HSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVA 133
H +PS ++ +T L+W+ G+ L DG + W+ +LA++ G PI A
Sbjct: 230 HDVPS--NKDVTSLDWNSDGTLLAMGSYDGFARIWTENGNLASTLGQHKG------PIFA 281
Query: 134 LSWLHNG 140
L W G
Sbjct: 282 LKWNKKG 288
Score = 30.4 bits (67), Expect = 7.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 80 HHEAITCLEWDQSGSRLLSADADGQIKCWSM 110
H + ++WD SG L S D +K WSM
Sbjct: 358 HTNEVNAIKWDPSGMLLASCSDDMTLKIWSM 388
>gi|89886480 zinedin isoform 2 [Homo sapiens]
Length = 760
Score = 34.7 bits (78), Expect = 0.40
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 60 RMIHILDTEHPWDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSM 110
R I LD +HS+ + H +A+TCL D +G+ L+S D ++ WS+
Sbjct: 666 RGIRFLDNRTGKPVHSMVA-HLDAVTCLAVDPNGAFLMSGSHDCSLRLWSL 715
Score = 30.4 bits (67), Expect = 7.5
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 71 WDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDP 130
W+ H++ I L + S S LL+A DG +K W +L + + + ++ +P
Sbjct: 435 WNPKFTLRSHYDGIRSLAFHHSQSALLTASEDGTLKLW----NLQKAVTAKKNAALDVEP 490
Query: 131 IVALSWLHNGVKLAL 145
I A H G LA+
Sbjct: 491 IHAFR-AHRGPVLAV 504
>gi|89886477 zinedin isoform 1 [Homo sapiens]
Length = 753
Score = 34.7 bits (78), Expect = 0.40
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 60 RMIHILDTEHPWDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSM 110
R I LD +HS+ + H +A+TCL D +G+ L+S D ++ WS+
Sbjct: 659 RGIRFLDNRTGKPVHSMVA-HLDAVTCLAVDPNGAFLMSGSHDCSLRLWSL 708
Score = 30.4 bits (67), Expect = 7.5
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 71 WDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDP 130
W+ H++ I L + S S LL+A DG +K W +L + + + ++ +P
Sbjct: 428 WNPKFTLRSHYDGIRSLAFHHSQSALLTASEDGTLKLW----NLQKAVTAKKNAALDVEP 483
Query: 131 IVALSWLHNGVKLAL 145
I A H G LA+
Sbjct: 484 IHAFR-AHRGPVLAV 497
>gi|50980309 UTP15, U3 small nucleolar ribonucleoprotein, homolog
[Homo sapiens]
Length = 518
Score = 34.3 bits (77), Expect = 0.52
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 80 HHEAITCLEWDQSGSRLLSADADGQIKCWSMADH 113
HH+ +TCL SG RLLS D ++K +S +
Sbjct: 247 HHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSY 280
>gi|46409657 WD repeat domain 56 [Homo sapiens]
Length = 777
Score = 34.3 bits (77), Expect = 0.52
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 80 HHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSW 136
H A+ W+ G+ L++ DGQIK WS L ++ +G P+ +++W
Sbjct: 105 HCGAVLAGRWNYEGTALVTVGEDGQIKIWSKTGMLRSTLAQ------QGTPVYSVAW 155
>gi|55743149 WD repeat domain 17 isoform 2 [Homo sapiens]
Length = 1298
Score = 33.9 bits (76), Expect = 0.68
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 59 TRMIHILDTEHPWD---LHSIPSEHHEAITCLEWDQSGSRLL-SADADGQIKCWSMADHL 114
T I+I +H ++ LH+I SEH + IT + W L S D + W++A+
Sbjct: 34 TLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASGSTDNLVIIWNVAEQK 93
Query: 115 ANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKSG 151
+ S +G P +LSW N + V G
Sbjct: 94 VIAKLDS----TKGIP-ASLSWCWNAEDVVAFVSHRG 125
>gi|31317311 WD repeat domain 17 isoform 1 [Homo sapiens]
Length = 1322
Score = 33.9 bits (76), Expect = 0.68
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 59 TRMIHILDTEHPWD---LHSIPSEHHEAITCLEWDQSGSRLL-SADADGQIKCWSMADHL 114
T I+I +H ++ LH+I SEH + IT + W L S D + W++A+
Sbjct: 58 TLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASGSTDNLVIIWNVAEQK 117
Query: 115 ANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKSG 151
+ S +G P +LSW N + V G
Sbjct: 118 VIAKLDS----TKGIP-ASLSWCWNAEDVVAFVSHRG 149
>gi|41281447 intraflagellar transport 140 [Homo sapiens]
Length = 1462
Score = 33.5 bits (75), Expect = 0.89
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 74 HSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSM 110
H++P H IT L W SG+ LLS D G + W +
Sbjct: 96 HTMPLTHTADITVLRWSPSGNCLLSGDRLGVLLLWRL 132
>gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo
sapiens]
Length = 514
Score = 33.1 bits (74), Expect = 1.2
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 76 IPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALS 135
+PS ++ +T L+W+ G+ L + DG + W+ +LA++ G PI AL
Sbjct: 222 VPS--NKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKG------PIFALK 273
Query: 136 WLHNG 140
W G
Sbjct: 274 WNKKG 278
Score = 30.0 bits (66), Expect = 9.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 80 HHEAITCLEWDQSGSRLLSADADGQIKCWSM 110
H + ++WD +G+ L S D +K WSM
Sbjct: 348 HTNEVNAIKWDPTGNLLASCSDDMTLKIWSM 378
>gi|61743971 sec13-like protein isoform 1 [Homo sapiens]
Length = 421
Score = 33.1 bits (74), Expect = 1.2
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 75 SIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMAD----HLANSWESSVGSLVEGDP 130
SI ++H + I + +D G R+ + +D +K W ++ H SW++ GS
Sbjct: 6 SIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGS------ 59
Query: 131 IVALSWLH 138
+ ++W H
Sbjct: 60 VWRVTWAH 67
>gi|61743969 sec13-like protein isoform 2 [Homo sapiens]
Length = 360
Score = 33.1 bits (74), Expect = 1.2
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 75 SIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMAD----HLANSWESSVGSLVEGDP 130
SI ++H + I + +D G R+ + +D +K W ++ H SW++ GS
Sbjct: 6 SIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGS------ 59
Query: 131 IVALSWLH 138
+ ++W H
Sbjct: 60 VWRVTWAH 67
>gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens]
Length = 1484
Score = 32.7 bits (73), Expect = 1.5
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 13/149 (8%)
Query: 733 PASDGLVSRLQPKQPLRLQFGRAPTLPGSA-ATLQLDGLARAPGQPKIDHLRRLHLGACP 791
PA DG+ + ++L+ GR+P G A A L+ + + P + H+ + P
Sbjct: 761 PARDGVYVSANGRMVIQLRPGRSPEPDGPAPAFLRQESFTKEPASGPPAPGKPPHISSHP 820
Query: 792 TEECKACTRCGCV------TMLKSPNRTTAVKQWEQRWIKNCLAVEGRG------PDACV 839
+ A TR + T L TA+ E R + N + E G P+ +
Sbjct: 821 LLQDLAATRAARMDFHSQDTHLILKETETALAALEARLLSNSVDAECEGGSTPRPPEDAL 880
Query: 840 TSRASEEAPAFVQLGPQSTHHSPRTPRSL 868
+ + + + V L + SP TP+ L
Sbjct: 881 SGDSDVDTASTVSLRSGKSGPSPTTPQPL 909
>gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo
sapiens]
Length = 1554
Score = 32.7 bits (73), Expect = 1.5
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 13/149 (8%)
Query: 733 PASDGLVSRLQPKQPLRLQFGRAPTLPGSA-ATLQLDGLARAPGQPKIDHLRRLHLGACP 791
PA DG+ + ++L+ GR+P G A A L+ + + P + H+ + P
Sbjct: 831 PARDGVYVSANGRMVIQLRPGRSPEPDGPAPAFLRQESFTKEPASGPPAPGKPPHISSHP 890
Query: 792 TEECKACTRCGCV------TMLKSPNRTTAVKQWEQRWIKNCLAVEGRG------PDACV 839
+ A TR + T L TA+ E R + N + E G P+ +
Sbjct: 891 LLQDLAATRAARMDFHSQDTHLILKETETALAALEARLLSNSVDAECEGGSTPRPPEDAL 950
Query: 840 TSRASEEAPAFVQLGPQSTHHSPRTPRSL 868
+ + + + V L + SP TP+ L
Sbjct: 951 SGDSDVDTASTVSLRSGKSGPSPTTPQPL 979
>gi|53729352 WD repeat-containing protein 1 isoform 2 [Homo sapiens]
Length = 466
Score = 31.6 bits (70), Expect = 3.4
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 57 DLTRMIHILDTEHPWDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMAD 112
D ++++ + + +++ HH I CL W S D + W+++D
Sbjct: 368 DASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSD 423
>gi|9257257 WD repeat-containing protein 1 isoform 1 [Homo sapiens]
Length = 606
Score = 31.6 bits (70), Expect = 3.4
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 57 DLTRMIHILDTEHPWDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWSMAD 112
D ++++ + + +++ HH I CL W S D + W+++D
Sbjct: 508 DASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSD 563
>gi|149363700 syntaxin binding protein 5-like [Homo sapiens]
Length = 1186
Score = 31.6 bits (70), Expect = 3.4
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 71 WDLHSIPSE----HHEAITCLEWDQSGSRLLSADADGQIKCWSM 110
WDL S +E + EAI ++W G + + + +DG + W++
Sbjct: 236 WDLKSKRAELRVYYDEAIHSIDWHHEGKQFMCSHSDGSLTLWNL 279
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,697,013
Number of Sequences: 37866
Number of extensions: 1643532
Number of successful extensions: 4384
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 4298
Number of HSP's gapped (non-prelim): 117
length of query: 877
length of database: 18,247,518
effective HSP length: 111
effective length of query: 766
effective length of database: 14,044,392
effective search space: 10758004272
effective search space used: 10758004272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.