Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TTC8 Sequence: fasta or formatted (505aa) NCBI GI: 38146012
Description:

tetratricopeptide repeat domain 8 isoform B

Referenced in:

Left-Right Axis
Planar Cell Polarity
Tetratricopeptide Domains

Other entries for this name:
alt prot [475aa] tetratricopeptide repeat domain 8 isoform C
alt prot [515aa] tetratricopeptide repeat domain 8 isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         51           2
 C cysteine            1.6          8           2
 D aspartate           4.4         22           1
 E glutamate           6.3         32           3
 F phenylalanine       4.2         21           1
 G glycine             5.1         26           2
 H histidine           2.8         14           2
 I isoleucine          4.4         22           1
 K lysine              4.8         24           1
 L leucine            10.9         55           3
 M methionine          3.4         17           2
 N asparagine          4.6         23           4
 P proline             4.2         21           1
 Q glutamine           6.3         32           2
 R arginine            5.3         27           3
 S serine              5.9         30           3
 T threonine           5.5         28           1
 V valine              4.4         22           1
 W tryptophan          1.2          6           3
 Y tyrosine            4.8         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetratricopeptide repeat domain 8 isoform B 
TTC8                  0.992   tetratricopeptide repeat domain 8 isoform A 
TTC8                  0.926   tetratricopeptide repeat domain 8 isoform C 
BBS4                  0.050   Bardet-Biedl syndrome 4 
OGT                   0.041   O-linked GlcNAc transferase isoform 2 
OGT                   0.041   O-linked GlcNAc transferase isoform 1 
TMTC4                 0.032   transmembrane and tetratricopeptide repeat containi...
TMTC4                 0.032   transmembrane and tetratricopeptide repeat containi...
CDC27                 0.027   cell division cycle protein 27 isoform 1 
CDC27                 0.027   cell division cycle protein 27 isoform 2 
CTR9                  0.027   SH2 domain binding protein 1 
TTC28                 0.025   tetratricopeptide repeat domain 28 
TMTC1                 0.024   transmembrane and tetratricopeptide repeat containin...
TMTC3                 0.022   transmembrane and tetratricopeptide repeat containi...
TTC37                 0.020   tetratricopeptide repeat domain 37 
TTC13                 0.019   tetratricopeptide repeat domain 13 isoform b 
TTC13                 0.019   tetratricopeptide repeat domain 13 isoform a 
IFT88                 0.019   intraflagellar transport 88 homolog isoform 1 
IFT88                 0.019   intraflagellar transport 88 homolog isoform 2 
KDM6A                 0.016   ubiquitously transcribed tetratricopeptide repeat, ...
UTY                   0.016   tetratricopeptide repeat protein isoform 3 
UTY                   0.016   tetratricopeptide repeat protein isoform 1 
UTY                   0.016   tetratricopeptide repeat protein isoform 2 
TTC7B                 0.015   tetratricopeptide repeat domain 7B 
TMTC2                 0.014   transmembrane and tetratricopeptide repeat containin...
TTC1                  0.014   tetratricopeptide repeat domain 1 
NPHP3                 0.012   nephrocystin 3 
CDC23                 0.012   cell division cycle protein 23 
TTC15                 0.011   tetratricopeptide repeat domain 15 
IFIT2                 0.010   interferon-induced protein with tetratricopeptide r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press