Guide to the Human Genome
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Name: IFIT2 Sequence: fasta or formatted (472aa) NCBI GI: 153082755
Description:

interferon-induced protein with tetratricopeptide repeats 2

Referenced in:

Interferon
Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         39           2
 C cysteine            2.5         12           2
 D aspartate           4.7         22           2
 E glutamate          11.2         53           3
 F phenylalanine       3.4         16           1
 G glycine             4.7         22           2
 H histidine           3.0         14           2
 I isoleucine          3.6         17           1
 K lysine              9.7         46           2
 L leucine            11.7         55           2
 M methionine          2.3         11           1
 N asparagine          5.7         27           2
 P proline             2.8         13           2
 Q glutamine           4.9         23           2
 R arginine            5.1         24           2
 S serine              5.5         26           2
 T threonine           1.7          8           1
 V valine              4.0         19           1
 W tryptophan          1.3          6           1
 Y tyrosine            4.0         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon-induced protein with tetratricopeptide r... 
IFIT3                 0.495   interferon-induced protein with tetratricopeptide re...
IFIT3                 0.495   interferon-induced protein with tetratricopeptide re...
IFIT5                 0.404   interferon-induced protein with tetratricopeptide rep...
IFIT1                 0.398   interferon-induced protein with tetratricopeptide r...
IFIT1L                0.384   interferon-induced protein with tetratricopeptide re...
MYH15                 0.021   myosin, heavy polypeptide 15 
TMTC1                 0.018   transmembrane and tetratricopeptide repeat containin...
TTC6                  0.014   PREDICTED: tetratricopeptide repeat domain 6 
TTC6                  0.014   PREDICTED: tetratricopeptide repeat domain 6 
C14orf25              0.014   PREDICTED: chromosome 14 open reading frame 25 [Hom...
DNAJC7                0.014   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
DNAJC7                0.013   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
MYH4                  0.013   myosin, heavy polypeptide 4, skeletal muscle 
OFD1                  0.013   oral-facial-digital syndrome 1 
C12orf30              0.012   mitochondrial distribution and morphology 20 
GOLGA4                0.011   golgi autoantigen, golgin subfamily a, 4 
TANC2                 0.011   tetratricopeptide repeat, ankyrin repeat and coiled...
TTC8                  0.011   tetratricopeptide repeat domain 8 isoform A 
TTC8                  0.011   tetratricopeptide repeat domain 8 isoform C 
TTC8                  0.011   tetratricopeptide repeat domain 8 isoform B 
TTC37                 0.011   tetratricopeptide repeat domain 37 
OGT                   0.010   O-linked GlcNAc transferase isoform 2 
OGT                   0.010   O-linked GlcNAc transferase isoform 1 
C10orf118             0.010   CTCL tumor antigen L14-2 
SAMD9                 0.010   sterile alpha motif domain containing 9 
CDC27                 0.010   cell division cycle protein 27 isoform 1 
CDC27                 0.010   cell division cycle protein 27 isoform 2 
C6orf204              0.010   chromosome 6 open reading frame 204 isoform a [Homo...
LOC727832             0.009   golgi autoantigen, golgin subfamily a-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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