Guide to the Human Genome
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Name: SEMG1 Sequence: fasta or formatted (402aa) NCBI GI: 38049014
Description:

semenogelin I isoform b preproprotein

Referenced in:

Testes and Sperm

Other entries for this name:
alt prot [462aa] semenogelin I isoform a preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2         13           2
 C cysteine            0.2          1           1
 D aspartate           4.5         18           2
 E glutamate           6.5         26           2
 F phenylalanine       1.7          7           1
 G glycine             9.2         37           2
 H histidine           7.2         29           2
 I isoleucine          3.2         13           2
 K lysine              9.0         36           1
 L leucine             6.7         27           3
 M methionine          0.5          2           1
 N asparagine          5.7         23           2
 P proline             2.5         10           1
 Q glutamine          12.9         52           2
 R arginine            4.2         17           2
 S serine             11.2         45           3
 T threonine           4.0         16           2
 V valine              4.2         17           2
 W tryptophan          0.5          2           1
 Y tyrosine            2.7         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   semenogelin I isoform b preproprotein 
SEMG1                 0.922   semenogelin I isoform a preproprotein 
SEMG2                 0.693   semenogelin II precursor 
FLG                   0.041   filaggrin 
RPTN                  0.030   repetin 
FLG2                  0.029   filaggrin family member 2 
HRNR                  0.028   hornerin 
LOC100170229          0.023   hypothetical protein LOC100170229 
HRC                   0.023   histidine rich calcium binding protein precursor [Hom...
SLTM                  0.020   modulator of estrogen induced transcription isoform ...
SLTM                  0.020   modulator of estrogen induced transcription isoform ...
SPARCL1               0.019   SPARC-like 1 
SPARCL1               0.019   SPARC-like 1 
ARL6IP4               0.019   SRp25 nuclear protein isoform 3 
LOC283685             0.019   PREDICTED: golgi autoantigen, golgin subfamily a-li...
ARL6IP4               0.019   SRp25 nuclear protein isoform 1 
EIF5B                 0.018   eukaryotic translation initiation factor 5B 
CRNN                  0.018   cornulin 
GCC2                  0.016   GRIP and coiled-coil domain-containing 2 
TAF15                 0.016   TBP-associated factor 15 isoform 1 
CDC2L1                0.016   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.016   cell division cycle 2-like 1 (PITSLRE proteins) isof...
ARL6IP4               0.016   SRp25 nuclear protein isoform 4 
ARL6IP4               0.016   SRp25 nuclear protein isoform 2 
NKTR                  0.015   natural killer-tumor recognition sequence 
BAT2D1                0.015   HBxAg transactivated protein 2 
PCNX                  0.015   pecanex-like 1 
PARD3                 0.015   partitioning-defective protein 3 homolog 
IFT81                 0.015   intraflagellar transport 81-like isoform 1 
IFT81                 0.015   intraflagellar transport 81-like isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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