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Search of human proteins with 37675387
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|37675387 dendritic cell-associated C-type lectin 1 isoform f
[Homo sapiens]
(77 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|37675387 dendritic cell-associated C-type lectin 1 isoform f ... 156 3e-39
gi|37675375 dendritic cell-associated C-type lectin 1 isoform c ... 138 8e-34
gi|37675373 dendritic cell-associated C-type lectin 1 isoform a ... 138 8e-34
gi|37675377 dendritic cell-associated C-type lectin 1 isoform d ... 137 2e-33
gi|13384604 dendritic cell-associated C-type lectin 1 isoform b ... 137 2e-33
gi|37675379 dendritic cell-associated C-type lectin 1 isoform e ... 78 2e-15
gi|153252029 C-type lectin domain family 1, member B isoform a [... 37 0.003
gi|37577103 C-type lectin-like receptor-1 [Homo sapiens] 36 0.008
gi|94557290 myeloid inhibitory C-type lectin-like receptor isofo... 32 0.084
gi|194018501 C-type lectin domain family 12, member B isoform 1 ... 31 0.19
gi|194018499 C-type lectin domain family 12, member B isoform 2 ... 31 0.19
gi|4505501 oxidized low density lipoprotein (lectin-like) recept... 31 0.25
gi|118150656 ankyrin repeat domain 7 [Homo sapiens] 28 1.2
gi|4557457 nicotinic cholinergic receptor alpha 1 isoform b prec... 28 2.1
gi|87567783 nicotinic cholinergic receptor alpha 1 isoform a pre... 28 2.1
gi|37574624 butyrophilin-like 3 [Homo sapiens] 28 2.1
gi|75709169 killer cell lectin-like receptor subfamily C, member... 27 2.7
gi|75709175 killer cell lectin-like receptor subfamily C, member... 27 2.7
gi|7710124 killer cell lectin-like receptor subfamily C, member ... 27 2.7
gi|75709177 killer cell lectin-like receptor subfamily C, member... 27 2.7
gi|47717094 killer cell lectin-like receptor subfamily C, member... 27 3.5
gi|47717092 killer cell lectin-like receptor subfamily C, member... 27 3.5
gi|7262384 killer cell lectin-like receptor subfamily C, member ... 27 3.5
gi|4504881 killer cell lectin-like receptor subfamily C, member ... 27 3.5
gi|4502833 neuronal nicotinic acetylcholine receptor beta 2 prec... 27 4.6
gi|148539848 desmocollin 3 isoform Dsc3b preproprotein [Homo sap... 27 4.6
gi|148539846 desmocollin 3 isoform Dsc3a preproprotein [Homo sap... 27 4.6
>gi|37675387 dendritic cell-associated C-type lectin 1 isoform f
[Homo sapiens]
Length = 77
Score = 156 bits (395), Expect = 3e-39
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVI 60
MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVI
Sbjct: 1 MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVI 60
Query: 61 AVVLGTMAGFKAVEFKG 77
AVVLGTMAGFKAVEFKG
Sbjct: 61 AVVLGTMAGFKAVEFKG 77
>gi|37675375 dendritic cell-associated C-type lectin 1 isoform c
[Homo sapiens]
Length = 189
Score = 138 bits (348), Expect = 8e-34
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVI 60
MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVI
Sbjct: 1 MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVI 60
Query: 61 AVVLGTMA 68
AVVLGTMA
Sbjct: 61 AVVLGTMA 68
>gi|37675373 dendritic cell-associated C-type lectin 1 isoform a
[Homo sapiens]
Length = 247
Score = 138 bits (348), Expect = 8e-34
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVI 60
MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVI
Sbjct: 1 MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVI 60
Query: 61 AVVLGTMA 68
AVVLGTMA
Sbjct: 61 AVVLGTMA 68
>gi|37675377 dendritic cell-associated C-type lectin 1 isoform d
[Homo sapiens]
Length = 143
Score = 137 bits (344), Expect = 2e-33
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVI 60
MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVI
Sbjct: 1 MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVI 60
Query: 61 AVVLGTM 67
AVVLGTM
Sbjct: 61 AVVLGTM 67
>gi|13384604 dendritic cell-associated C-type lectin 1 isoform b
[Homo sapiens]
Length = 201
Score = 137 bits (344), Expect = 2e-33
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVI 60
MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVI
Sbjct: 1 MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVI 60
Query: 61 AVVLGTM 67
AVVLGTM
Sbjct: 61 AVVLGTM 67
>gi|37675379 dendritic cell-associated C-type lectin 1 isoform e
[Homo sapiens]
Length = 168
Score = 77.8 bits (190), Expect = 2e-15
Identities = 38/45 (84%), Positives = 38/45 (84%), Gaps = 2/45 (4%)
Query: 1 MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKG--SCAASPPW 43
MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKG S P W
Sbjct: 1 MEYHPDLENLDEDGYTQLHFDSQSNTRIAVVSEKGVLSSPCPPNW 45
>gi|153252029 C-type lectin domain family 1, member B isoform a
[Homo sapiens]
Length = 229
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 11 DEDGYTQLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILVIAVVLG 65
DEDGY L+ ++ I+V S A+S WR++A+IL ILC+ ++V V LG
Sbjct: 3 DEDGYITLNIKTRKPALISVGS-----ASSSWWRVMALILLILCVGMVVGLVALG 52
>gi|37577103 C-type lectin-like receptor-1 [Homo sapiens]
Length = 280
Score = 35.8 bits (81), Expect = 0.008
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 2 EYHPDLENLDEDGYT--QLHFDSQSNTRIAVVSEKGSCAASPPWRLIAVILGILCLVILV 59
+Y + LD+DG T LH + TR A S WR +A+ L LCLV+L+
Sbjct: 4 KYSSTRDMLDDDGDTTMSLHSQGSATTRHPEPRRTEHRAPSSTWRPVALTLLTLCLVLLI 63
Query: 60 IAVVLGTM 67
LG +
Sbjct: 64 GLAALGLL 71
>gi|94557290 myeloid inhibitory C-type lectin-like receptor
isoform alpha [Homo sapiens]
Length = 265
Score = 32.3 bits (72), Expect = 0.084
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 11 DEDGYTQLHFDSQSNTR----IAVVSEKGSCAASPPWRLIAVILGILCLVILVIAVVLGT 66
+E Y L F + S I EK A S WR A+ L +LCL++L+ VL +
Sbjct: 3 EEVTYADLQFQNSSEMEKIPEIGKFGEKAPPAPSHVWRPAALFLTLLCLLLLIGLGVLAS 62
Query: 67 M 67
M
Sbjct: 63 M 63
>gi|194018501 C-type lectin domain family 12, member B isoform 1
[Homo sapiens]
Length = 276
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 33 EKGSCAASPPWRLIAVILGILCLVILVIAVVLGTM 67
++G A SP WR A+ L LCL++L+ V LG M
Sbjct: 29 KRGHPAPSPIWRHAALGLVTLCLMLLIGLVTLGMM 63
>gi|194018499 C-type lectin domain family 12, member B isoform 2
[Homo sapiens]
Length = 232
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 33 EKGSCAASPPWRLIAVILGILCLVILVIAVVLGTM 67
++G A SP WR A+ L LCL++L+ V LG M
Sbjct: 29 KRGHPAPSPIWRHAALGLVTLCLMLLIGLVTLGMM 63
>gi|4505501 oxidized low density lipoprotein (lectin-like)
receptor 1 [Homo sapiens]
Length = 273
Score = 30.8 bits (68), Expect = 0.25
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 40 SPPWRLIAVILGILCLVILVIAVVLG 65
SP W L A LG+LCL ++V +VLG
Sbjct: 32 SPWWCLAAATLGVLCLGLVVTIMVLG 57
>gi|118150656 ankyrin repeat domain 7 [Homo sapiens]
Length = 254
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 1 MEYHPDLENLDEDGYTQLHFDSQSNT--RIAVVSEKGS-CAASPPWRLIAVILGIL---- 53
+EY DLE ++DGYT L +N + + EKG+ AS ++ A+IL +
Sbjct: 145 LEYEADLEAKNKDGYTPLLVAVINNNPKMVKFLLEKGADVNASDNYQRTALILAVSGEPP 204
Query: 54 CLVILVI 60
CLV L++
Sbjct: 205 CLVKLLL 211
>gi|4557457 nicotinic cholinergic receptor alpha 1 isoform b
precursor [Homo sapiens]
Length = 457
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/39 (25%), Positives = 25/39 (64%)
Query: 32 SEKGSCAASPPWRLIAVILGILCLVILVIAVVLGTMAGF 70
S++ S A+ W+ +A+++ + L + ++ ++GT+A F
Sbjct: 408 SDQESNNAAAEWKYVAMVMDHILLGVFMLVCIIGTLAVF 446
>gi|87567783 nicotinic cholinergic receptor alpha 1 isoform a
precursor [Homo sapiens]
Length = 482
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/39 (25%), Positives = 25/39 (64%)
Query: 32 SEKGSCAASPPWRLIAVILGILCLVILVIAVVLGTMAGF 70
S++ S A+ W+ +A+++ + L + ++ ++GT+A F
Sbjct: 433 SDQESNNAAAEWKYVAMVMDHILLGVFMLVCIIGTLAVF 471
>gi|37574624 butyrophilin-like 3 [Homo sapiens]
Length = 466
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 42 PWRLIAVILGILCLVILVIAVVLGTMAGFKAVEFK 76
PWRL +++LG+LC + G + G V FK
Sbjct: 232 PWRLASILLGLLC------GALCGVVMGMIIVFFK 260
>gi|75709169 killer cell lectin-like receptor subfamily C, member
2 [Homo sapiens]
Length = 231
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 41 PPWRLIAVILGILCLVILVIAVVLGTM 67
PP +L A +LGI+C+V++ A VL T+
Sbjct: 67 PPEKLTAEVLGIICIVLM--ATVLKTI 91
>gi|75709175 killer cell lectin-like receptor subfamily C, member
3 isoform E [Homo sapiens]
Length = 240
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 41 PPWRLIAVILGILCLVILVIAVVLGTM 67
PP +L A +LGI+C+V++ A VL T+
Sbjct: 67 PPEKLTAEVLGIICIVLM--ATVLKTI 91
>gi|7710124 killer cell lectin-like receptor subfamily C, member 4
[Homo sapiens]
Length = 158
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 41 PPWRLIAVILGILCLVILVIAVVLGTM 67
PP +L A +LGI+C+V++ A VL T+
Sbjct: 67 PPEKLTAEVLGIICIVLM--ATVLKTI 91
>gi|75709177 killer cell lectin-like receptor subfamily C, member
3 isoform H [Homo sapiens]
Length = 257
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 41 PPWRLIAVILGILCLVILVIAVVLGTM 67
PP +L A +LGI+C+V++ A VL T+
Sbjct: 67 PPEKLTAEVLGIICIVLM--ATVLKTI 91
>gi|47717094 killer cell lectin-like receptor subfamily C, member
1 isoform NKG2-A [Homo sapiens]
Length = 233
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 40 SPPWRLIAVILGILCLVILVIAVVL 64
S P +LI ILGI+CL+++ V +
Sbjct: 66 SAPEKLIVGILGIICLILMASVVTI 90
>gi|47717092 killer cell lectin-like receptor subfamily C, member
1 isoform NKG2-B [Homo sapiens]
Length = 215
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 40 SPPWRLIAVILGILCLVILVIAVVL 64
S P +LI ILGI+CL+++ V +
Sbjct: 66 SAPEKLIVGILGIICLILMASVVTI 90
>gi|7262384 killer cell lectin-like receptor subfamily C, member 1
isoform NKG2-B [Homo sapiens]
Length = 215
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 40 SPPWRLIAVILGILCLVILVIAVVL 64
S P +LI ILGI+CL+++ V +
Sbjct: 66 SAPEKLIVGILGIICLILMASVVTI 90
>gi|4504881 killer cell lectin-like receptor subfamily C, member 1
isoform NKG2-A [Homo sapiens]
Length = 233
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 40 SPPWRLIAVILGILCLVILVIAVVL 64
S P +LI ILGI+CL+++ V +
Sbjct: 66 SAPEKLIVGILGIICLILMASVVTI 90
>gi|4502833 neuronal nicotinic acetylcholine receptor beta 2
precursor [Homo sapiens]
Length = 502
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 32 SEKGSCAASPPWRLIAVILGILCLVILVIAVVLGTMAGF 70
SE + S W+ +A+++ L L I V V GT+ F
Sbjct: 440 SEDDDQSVSEDWKYVAMVIDRLFLWIFVFVCVFGTIGMF 478
>gi|148539848 desmocollin 3 isoform Dsc3b preproprotein [Homo
sapiens]
Length = 839
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 43 WRLIAVILGILCLVILVIAVVLGTMAGFKAVEF 75
W ++A++LGI L +++ +V G K F
Sbjct: 691 WAILAILLGIALLFSVLLTLVCGVFGATKGKRF 723
>gi|148539846 desmocollin 3 isoform Dsc3a preproprotein [Homo
sapiens]
Length = 896
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 43 WRLIAVILGILCLVILVIAVVLGTMAGFKAVEF 75
W ++A++LGI L +++ +V G K F
Sbjct: 691 WAILAILLGIALLFSVLLTLVCGVFGATKGKRF 723
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,692,566
Number of Sequences: 37866
Number of extensions: 82128
Number of successful extensions: 426
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 27
length of query: 77
length of database: 18,247,518
effective HSP length: 49
effective length of query: 28
effective length of database: 16,392,084
effective search space: 458978352
effective search space used: 458978352
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.