Guide to the Human Genome
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Name: CLEC12B Sequence: fasta or formatted (276aa) NCBI GI: 194018501
Description:

C-type lectin domain family 12, member B isoform 1

Referenced in:

Lectin Families
Macrophages and Monocytes

Other entries for this name:
alt prot [232aa] C-type lectin domain family 12, member B isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         12           2
 C cysteine            3.3          9           1
 D aspartate           5.4         15           1
 E glutamate           6.2         17           3
 F phenylalanine       4.3         12           2
 G glycine             4.7         13           1
 H histidine           1.4          4           1
 I isoleucine          5.8         16           2
 K lysine              6.2         17           1
 L leucine            10.9         30           2
 M methionine          3.3          9           2
 N asparagine          6.2         17           2
 P proline             3.3          9           1
 Q glutamine           6.9         19           4
 R arginine            3.6         10           1
 S serine             11.2         31           2
 T threonine           5.1         14           2
 V valine              2.5          7           1
 W tryptophan          3.3          9           1
 Y tyrosine            2.2          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C-type lectin domain family 12, member B isoform 1 ... 
CLEC12B               0.815   C-type lectin domain family 12, member B isoform 2 ...
CLEC12A               0.227   myeloid inhibitory C-type lectin-like receptor isofo...
CLEC1A                0.225   C-type lectin-like receptor-1 
OLR1                  0.172   oxidized low density lipoprotein (lectin-like) recept...
CLEC1B                0.155   C-type lectin domain family 1, member B isoform a [...
CLEC1B                0.144   C-type lectin domain family 1, member B isoform b [...
CLEC12A               0.141   myeloid inhibitory C-type lectin-like receptor isofo...
CLEC9A                0.141   C-type lectin domain family 9, member A 
CLEC7A                0.132   dendritic cell-associated C-type lectin 1 isoform a ...
KLRK1                 0.124   NKG2-D type II integral membrane protein 
CD209                 0.122   CD209 molecule isoform 3 
CD209                 0.122   CD209 molecule isoform 6 
CD209                 0.122   CD209 molecule isoform 1 
CLEC4M                0.119   C-type lectin domain family 4, member M isoform 9 [...
CLEC4M                0.119   C-type lectin domain family 4, member M isoform 12 ...
CLEC4M                0.119   C-type lectin domain family 4, member M isoform 2 [...
CD209                 0.119   CD209 molecule isoform 7 
CLEC4M                0.119   C-type lectin domain family 4, member M isoform 8 [...
CLEC4M                0.119   C-type lectin domain family 4, member M isoform 1 [H...
CLEC4M                0.119   C-type lectin domain family 4, member M isoform 7 [...
CD209                 0.117   CD209 molecule isoform 8 
CD209                 0.117   CD209 molecule isoform 5 
CLEC4M                0.115   C-type lectin domain family 4, member M isoform 11 ...
CLEC7A                0.108   dendritic cell-associated C-type lectin 1 isoform b ...
CLEC7A                0.108   dendritic cell-associated C-type lectin 1 isoform e ...
CD209                 0.106   CD209 molecule isoform 4 
KLRD1                 0.104   killer cell lectin-like receptor subfamily D, membe...
KLRD1                 0.104   killer cell lectin-like receptor subfamily D, member ...
KLRD1                 0.104   killer cell lectin-like receptor subfamily D, member ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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