Guide to the Human Genome
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Name: CLEC1A Sequence: fasta or formatted (280aa) NCBI GI: 37577103
Description:

C-type lectin-like receptor-1

Referenced in:

Lectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         15           2
 C cysteine            3.9         11           1
 D aspartate           5.7         16           3
 E glutamate           6.8         19           2
 F phenylalanine       3.6         10           2
 G glycine             5.7         16           1
 H histidine           2.9          8           1
 I isoleucine          3.2          9           3
 K lysine              5.4         15           1
 L leucine            11.4         32           2
 M methionine          2.9          8           1
 N asparagine          2.9          8           1
 P proline             3.9         11           2
 Q glutamine           5.4         15           1
 R arginine            5.4         15           2
 S serine              9.6         27           2
 T threonine           6.8         19           2
 V valine              3.2          9           1
 W tryptophan          2.5          7           1
 Y tyrosine            3.6         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C-type lectin-like receptor-1 
CLEC12B               0.219   C-type lectin domain family 12, member B isoform 1 ...
CLEC12B               0.198   C-type lectin domain family 12, member B isoform 2 ...
CLEC12A               0.196   myeloid inhibitory C-type lectin-like receptor isofo...
CLEC1B                0.189   C-type lectin domain family 1, member B isoform a [...
OLR1                  0.157   oxidized low density lipoprotein (lectin-like) recept...
CLEC1B                0.157   C-type lectin domain family 1, member B isoform b [...
CLEC12A               0.144   myeloid inhibitory C-type lectin-like receptor isofo...
CLEC7A                0.143   dendritic cell-associated C-type lectin 1 isoform a ...
CLEC7A                0.105   dendritic cell-associated C-type lectin 1 isoform e ...
CLEC7A                0.105   dendritic cell-associated C-type lectin 1 isoform b ...
CLEC9A                0.094   C-type lectin domain family 9, member A 
KLRF1                 0.089   killer cell lectin-like receptor subfamily F, member ...
KLRD1                 0.087   killer cell lectin-like receptor subfamily D, membe...
KLRD1                 0.087   killer cell lectin-like receptor subfamily D, member ...
KLRD1                 0.087   killer cell lectin-like receptor subfamily D, member ...
KLRK1                 0.082   NKG2-D type II integral membrane protein 
CLEC4A                0.075   C-type lectin domain family 4, member A isoform 1 [Ho...
KLRC2                 0.071   killer cell lectin-like receptor subfamily C, member...
KLRC1                 0.071   killer cell lectin-like receptor subfamily C, member...
KLRC1                 0.071   killer cell lectin-like receptor subfamily C, member ...
ASGR2                 0.070   asialoglycoprotein receptor 2 isoform c 
ASGR2                 0.070   asialoglycoprotein receptor 2 isoform b 
ASGR2                 0.070   asialoglycoprotein receptor 2 isoform a 
ASGR2                 0.070   asialoglycoprotein receptor 2 isoform a 
KLRC1                 0.070   killer cell lectin-like receptor subfamily C, member...
KLRC1                 0.070   killer cell lectin-like receptor subfamily C, member ...
CLEC4A                0.064   C-type lectin domain family 4, member A isoform 2 [H...
CLEC4A                0.064   C-type lectin domain family 4, member A isoform 4 [H...
CLEC4A                0.064   C-type lectin domain family 4, member A isoform 3 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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