Guide to the Human Genome
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Name: CLEC12B Sequence: fasta or formatted (232aa) NCBI GI: 194018499
Description:

C-type lectin domain family 12, member B isoform 2

Referenced in:

Lectin Families
Macrophages and Monocytes

Other entries for this name:
alt prot [276aa] C-type lectin domain family 12, member B isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          8           2
 C cysteine            2.6          6           1
 D aspartate           5.2         12           1
 E glutamate           5.6         13           3
 F phenylalanine       3.9          9           2
 G glycine             4.3         10           1
 H histidine           1.7          4           1
 I isoleucine          4.7         11           2
 K lysine              5.2         12           1
 L leucine            12.1         28           2
 M methionine          3.9          9           2
 N asparagine          6.9         16           2
 P proline             3.4          8           1
 Q glutamine           7.3         17           4
 R arginine            3.9          9           1
 S serine             12.1         28           2
 T threonine           4.7         11           2
 V valine              3.0          7           1
 W tryptophan          3.4          8           1
 Y tyrosine            2.6          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C-type lectin domain family 12, member B isoform 2 ... 
CLEC12B               0.978   C-type lectin domain family 12, member B isoform 1 ...
CLEC12A               0.250   myeloid inhibitory C-type lectin-like receptor isofo...
CLEC1A                0.243   C-type lectin-like receptor-1 
OLR1                  0.154   oxidized low density lipoprotein (lectin-like) recept...
CLEC12A               0.147   myeloid inhibitory C-type lectin-like receptor isofo...
CLEC1B                0.136   C-type lectin domain family 1, member B isoform a [...
KLRK1                 0.134   NKG2-D type II integral membrane protein 
CLEC9A                0.134   C-type lectin domain family 9, member A 
CLEC1B                0.123   C-type lectin domain family 1, member B isoform b [...
CLEC7A                0.121   dendritic cell-associated C-type lectin 1 isoform a ...
CD209                 0.107   CD209 molecule isoform 3 
CD209                 0.107   CD209 molecule isoform 6 
CD209                 0.107   CD209 molecule isoform 1 
KLRD1                 0.107   killer cell lectin-like receptor subfamily D, membe...
KLRD1                 0.107   killer cell lectin-like receptor subfamily D, member ...
KLRD1                 0.107   killer cell lectin-like receptor subfamily D, member ...
CD209                 0.103   CD209 molecule isoform 7 
CD209                 0.101   CD209 molecule isoform 8 
CLEC4M                0.101   C-type lectin domain family 4, member M isoform 9 [...
CLEC4M                0.101   C-type lectin domain family 4, member M isoform 12 ...
CLEC4M                0.101   C-type lectin domain family 4, member M isoform 2 [...
CLEC4M                0.101   C-type lectin domain family 4, member M isoform 8 [...
CLEC4M                0.101   C-type lectin domain family 4, member M isoform 1 [H...
CLEC4M                0.099   C-type lectin domain family 4, member M isoform 7 [...
CD209                 0.099   CD209 molecule isoform 5 
FCER2                 0.099   Fc fragment of IgE, low affinity II, receptor for (C...
ASGR1                 0.096   asialoglycoprotein receptor 1 
CLEC4M                0.096   C-type lectin domain family 4, member M isoform 11 ...
ASGR2                 0.096   asialoglycoprotein receptor 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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