Guide to the Human Genome
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Name: CLEC7A Sequence: fasta or formatted (189aa) NCBI GI: 37675375
Description:

dendritic cell-associated C-type lectin 1 isoform c

Referenced in:

Lectin Families

Other entries for this name:
alt prot [201aa] dendritic cell-associated C-type lectin 1 isoform b
alt prot [247aa] dendritic cell-associated C-type lectin 1 isoform a
alt prot [143aa] dendritic cell-associated C-type lectin 1 isoform d
alt prot [168aa] dendritic cell-associated C-type lectin 1 isoform e
alt prot [77aa] dendritic cell-associated C-type lectin 1 isoform f
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          7           2
 C cysteine            3.2          6           1
 D aspartate           4.8          9           1
 E glutamate           4.8          9           1
 F phenylalanine       1.6          3           1
 G glycine             4.8          9           1
 H histidine           2.6          5           1
 I isoleucine          6.3         12           2
 K lysine              4.8          9           1
 L leucine            11.1         21           2
 M methionine          2.1          4           1
 N asparagine          6.3         12           1
 P proline             5.3         10           2
 Q glutamine           3.7          7           1
 R arginine            3.7          7           1
 S serine             14.8         28           2
 T threonine           4.8          9           2
 V valine              5.8         11           2
 W tryptophan          2.6          5           1
 Y tyrosine            3.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dendritic cell-associated C-type lectin 1 isoform c ... 
CLEC7A                0.860   dendritic cell-associated C-type lectin 1 isoform a ...
CLEC7A                0.690   dendritic cell-associated C-type lectin 1 isoform d ...
CLEC7A                0.547   dendritic cell-associated C-type lectin 1 isoform b ...
CLEC7A                0.310   dendritic cell-associated C-type lectin 1 isoform f ...
CLEC7A                0.247   dendritic cell-associated C-type lectin 1 isoform e ...
CLEC1B                0.132   C-type lectin domain family 1, member B isoform a [...
OLR1                  0.107   oxidized low density lipoprotein (lectin-like) recept...
CLEC12A               0.102   myeloid inhibitory C-type lectin-like receptor isofo...
CLEC1A                0.096   C-type lectin-like receptor-1 
CLEC12B               0.085   C-type lectin domain family 12, member B isoform 1 ...
CLEC12B               0.085   C-type lectin domain family 12, member B isoform 2 ...
CLEC9A                0.082   C-type lectin domain family 9, member A 
KLRC2                 0.074   killer cell lectin-like receptor subfamily C, member...
KLRC1                 0.071   killer cell lectin-like receptor subfamily C, member...
KLRC1                 0.071   killer cell lectin-like receptor subfamily C, member ...
CD72                  0.071   CD72 molecule 
CLEC12A               0.069   myeloid inhibitory C-type lectin-like receptor isofo...
KLRC3                 0.063   killer cell lectin-like receptor subfamily C, member...
KLRC3                 0.063   killer cell lectin-like receptor subfamily C, member...
CLEC1B                0.060   C-type lectin domain family 1, member B isoform b [...
KLRD1                 0.058   killer cell lectin-like receptor subfamily D, membe...
KLRD1                 0.058   killer cell lectin-like receptor subfamily D, member ...
KLRB1                 0.055   killer cell lectin-like receptor subfamily B, member ...
CLEC4E                0.055   C-type lectin domain family 4, member E 
CD209                 0.052   CD209 molecule isoform 8 
CLEC5A                0.052   C-type lectin, superfamily member 5 
KLRK1                 0.052   NKG2-D type II integral membrane protein 
CD209                 0.052   CD209 molecule isoform 4 
CLEC4A                0.052   C-type lectin domain family 4, member A isoform 3 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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