Guide to the Human Genome
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Name: CLEC7A Sequence: fasta or formatted (143aa) NCBI GI: 37675377
Description:

dendritic cell-associated C-type lectin 1 isoform d

Referenced in:

Lectin Families

Other entries for this name:
alt prot [201aa] dendritic cell-associated C-type lectin 1 isoform b
alt prot [247aa] dendritic cell-associated C-type lectin 1 isoform a
alt prot [189aa] dendritic cell-associated C-type lectin 1 isoform c
alt prot [168aa] dendritic cell-associated C-type lectin 1 isoform e
alt prot [77aa] dendritic cell-associated C-type lectin 1 isoform f
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5          5           2
 C cysteine            4.2          6           1
 D aspartate           5.6          8           1
 E glutamate           4.2          6           1
 F phenylalanine       1.4          2           1
 G glycine             4.9          7           1
 H histidine           2.8          4           1
 I isoleucine          7.7         11           2
 K lysine              4.2          6           1
 L leucine            12.6         18           2
 M methionine          2.8          4           1
 N asparagine          4.9          7           1
 P proline             5.6          8           2
 Q glutamine           3.5          5           1
 R arginine            3.5          5           1
 S serine             14.0         20           2
 T threonine           2.1          3           1
 V valine              6.3          9           2
 W tryptophan          2.8          4           1
 Y tyrosine            3.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dendritic cell-associated C-type lectin 1 isoform d ... 
CLEC7A                0.919   dendritic cell-associated C-type lectin 1 isoform c ...
CLEC7A                0.810   dendritic cell-associated C-type lectin 1 isoform b ...
CLEC7A                0.729   dendritic cell-associated C-type lectin 1 isoform a ...
CLEC7A                0.516   dendritic cell-associated C-type lectin 1 isoform e ...
CLEC7A                0.410   dendritic cell-associated C-type lectin 1 isoform f ...
CLEC1B                0.132   C-type lectin domain family 1, member B isoform a [...
KLRC1                 0.117   killer cell lectin-like receptor subfamily C, member...
KLRC1                 0.117   killer cell lectin-like receptor subfamily C, member ...
CLEC1B                0.106   C-type lectin domain family 1, member B isoform b [...
KLRC2                 0.106   killer cell lectin-like receptor subfamily C, member...
CLEC2L                0.099   C-type lectin domain family 2, member L 
OLR1                  0.099   oxidized low density lipoprotein (lectin-like) recept...
KLRC1                 0.095   killer cell lectin-like receptor subfamily C, member...
KLRC1                 0.095   killer cell lectin-like receptor subfamily C, member ...
KLRC3                 0.092   killer cell lectin-like receptor subfamily C, member...
KLRC3                 0.092   killer cell lectin-like receptor subfamily C, member...
CLEC12A               0.092   myeloid inhibitory C-type lectin-like receptor isofo...
CLEC12A               0.092   myeloid inhibitory C-type lectin-like receptor isofo...
CLEC9A                0.088   C-type lectin domain family 9, member A 
CD72                  0.084   CD72 molecule 
CLEC2D                0.081   osteoclast inhibitory lectin isoform 2 
CLEC2D                0.081   osteoclast inhibitory lectin isoform 1 
KLRG2                 0.081   killer cell lectin-like receptor subfamily G, member...
KLRK1                 0.077   NKG2-D type II integral membrane protein 
KLRC4                 0.077   killer cell lectin-like receptor subfamily C, member ...
CD69                  0.073   CD69 molecule 
CLEC4E                0.073   C-type lectin domain family 4, member E 
CLEC4A                0.070   C-type lectin domain family 4, member A isoform 2 [H...
CD209                 0.066   CD209 molecule isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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