Guide to the Human Genome
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Name: CLEC7A Sequence: fasta or formatted (77aa) NCBI GI: 37675387
Description:

dendritic cell-associated C-type lectin 1 isoform f

Referenced in:

Lectin Families

Other entries for this name:
alt prot [201aa] dendritic cell-associated C-type lectin 1 isoform b
alt prot [247aa] dendritic cell-associated C-type lectin 1 isoform a
alt prot [189aa] dendritic cell-associated C-type lectin 1 isoform c
alt prot [143aa] dendritic cell-associated C-type lectin 1 isoform d
alt prot [168aa] dendritic cell-associated C-type lectin 1 isoform e
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1          7           2
 C cysteine            2.6          2           1
 D aspartate           5.2          4           1
 E glutamate           6.5          5           1
 F phenylalanine       3.9          3           1
 G glycine             7.8          6           1
 H histidine           2.6          2           1
 I isoleucine          7.8          6           1
 K lysine              3.9          3           1
 L leucine            11.7          9           1
 M methionine          2.6          2           1
 N asparagine          2.6          2           1
 P proline             3.9          3           2
 Q glutamine           2.6          2           1
 R arginine            2.6          2           1
 S serine              6.5          5           1
 T threonine           3.9          3           1
 V valine             10.4          8           2
 W tryptophan          1.3          1           1
 Y tyrosine            2.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dendritic cell-associated C-type lectin 1 isoform f ... 
CLEC7A                0.863   dendritic cell-associated C-type lectin 1 isoform c ...
CLEC7A                0.863   dendritic cell-associated C-type lectin 1 isoform a ...
CLEC7A                0.855   dendritic cell-associated C-type lectin 1 isoform d ...
CLEC7A                0.855   dendritic cell-associated C-type lectin 1 isoform b ...
CLEC7A                0.405   dendritic cell-associated C-type lectin 1 isoform e ...
CLEC1B                0.092   C-type lectin domain family 1, member B isoform a [...
CLEC1A                0.084   C-type lectin-like receptor-1 
CLEC12A               0.053   myeloid inhibitory C-type lectin-like receptor isofo...
CLEC12B               0.046   C-type lectin domain family 12, member B isoform 1 ...
CLEC12B               0.046   C-type lectin domain family 12, member B isoform 2 ...
OLR1                  0.046   oxidized low density lipoprotein (lectin-like) recept...
ANKRD7                0.023   ankyrin repeat domain 7 
CHRNA1                0.023   nicotinic cholinergic receptor alpha 1 isoform b prec...
CHRNA1                0.023   nicotinic cholinergic receptor alpha 1 isoform a pre...
BTNL3                 0.023   butyrophilin-like 3 
KLRC2                 0.015   killer cell lectin-like receptor subfamily C, member...
KLRC3                 0.015   killer cell lectin-like receptor subfamily C, member...
KLRC4                 0.015   killer cell lectin-like receptor subfamily C, member ...
KLRC3                 0.015   killer cell lectin-like receptor subfamily C, member...
KLRC1                 0.015   killer cell lectin-like receptor subfamily C, member...
KLRC1                 0.015   killer cell lectin-like receptor subfamily C, member...
KLRC1                 0.015   killer cell lectin-like receptor subfamily C, member ...
KLRC1                 0.015   killer cell lectin-like receptor subfamily C, member ...
CHRNB2                0.015   neuronal nicotinic acetylcholine receptor beta 2 prec...
DSC3                  0.015   desmocollin 3 isoform Dsc3b preproprotein 
DSC3                  0.015   desmocollin 3 isoform Dsc3a preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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