Guide to the Human Genome
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Name: CLEC7A Sequence: fasta or formatted (168aa) NCBI GI: 37675379
Description:

dendritic cell-associated C-type lectin 1 isoform e

Referenced in:

Lectin Families

Other entries for this name:
alt prot [201aa] dendritic cell-associated C-type lectin 1 isoform b
alt prot [247aa] dendritic cell-associated C-type lectin 1 isoform a
alt prot [189aa] dendritic cell-associated C-type lectin 1 isoform c
alt prot [143aa] dendritic cell-associated C-type lectin 1 isoform d
alt prot [77aa] dendritic cell-associated C-type lectin 1 isoform f
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.2          2           1
 C cysteine            3.6          6           1
 D aspartate           5.4          9           1
 E glutamate           6.0         10           1
 F phenylalanine       4.2          7           1
 G glycine             4.2          7           1
 H histidine           1.8          3           1
 I isoleucine          6.0         10           2
 K lysine              4.2          7           2
 L leucine             8.3         14           2
 M methionine          1.8          3           1
 N asparagine          6.0         10           1
 P proline             6.0         10           2
 Q glutamine           6.0         10           1
 R arginine            2.4          4           1
 S serine             15.5         26           2
 T threonine           4.2          7           2
 V valine              6.0         10           2
 W tryptophan          4.2          7           1
 Y tyrosine            3.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dendritic cell-associated C-type lectin 1 isoform e ... 
CLEC7A                0.949   dendritic cell-associated C-type lectin 1 isoform b ...
CLEC7A                0.796   dendritic cell-associated C-type lectin 1 isoform a ...
CLEC7A                0.423   dendritic cell-associated C-type lectin 1 isoform d ...
OLR1                  0.282   oxidized low density lipoprotein (lectin-like) recept...
CLEC7A                0.270   dendritic cell-associated C-type lectin 1 isoform c ...
CLEC1B                0.198   C-type lectin domain family 1, member B isoform b [...
CLEC1B                0.198   C-type lectin domain family 1, member B isoform a [...
CLEC1A                0.177   C-type lectin-like receptor-1 
CLEC12B               0.177   C-type lectin domain family 12, member B isoform 1 ...
CLEC9A                0.171   C-type lectin domain family 9, member A 
CLEC7A                0.159   dendritic cell-associated C-type lectin 1 isoform f ...
KLRF1                 0.141   killer cell lectin-like receptor subfamily F, member ...
CLEC4M                0.135   C-type lectin domain family 4, member M isoform 7 [...
CLEC4M                0.132   C-type lectin domain family 4, member M isoform 11 ...
CLEC4M                0.132   C-type lectin domain family 4, member M isoform 9 [...
CLEC4M                0.132   C-type lectin domain family 4, member M isoform 12 ...
CLEC4M                0.132   C-type lectin domain family 4, member M isoform 2 [...
CLEC4M                0.132   C-type lectin domain family 4, member M isoform 8 [...
CLEC4M                0.132   C-type lectin domain family 4, member M isoform 1 [H...
CD209                 0.129   CD209 molecule isoform 8 
CD209                 0.129   CD209 molecule isoform 3 
CD209                 0.129   CD209 molecule isoform 6 
CD209                 0.129   CD209 molecule isoform 1 
CD209                 0.126   CD209 molecule isoform 7 
CD209                 0.126   CD209 molecule isoform 5 
KLRK1                 0.126   NKG2-D type II integral membrane protein 
KLRB1                 0.126   killer cell lectin-like receptor subfamily B, member ...
CLEC5A                0.126   C-type lectin, superfamily member 5 
KLRD1                 0.126   killer cell lectin-like receptor subfamily D, membe...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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