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Name: CLEC7A Sequence: fasta or formatted (201aa) NCBI GI: 13384604
Description:

dendritic cell-associated C-type lectin 1 isoform b

Referenced in:

Lectin Families

Other entries for this name:
alt prot [247aa] dendritic cell-associated C-type lectin 1 isoform a
alt prot [189aa] dendritic cell-associated C-type lectin 1 isoform c
alt prot [143aa] dendritic cell-associated C-type lectin 1 isoform d
alt prot [168aa] dendritic cell-associated C-type lectin 1 isoform e
alt prot [77aa] dendritic cell-associated C-type lectin 1 isoform f
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0          6           2
 C cysteine            4.0          8           1
 D aspartate           4.5          9           1
 E glutamate           5.0         10           1
 F phenylalanine       3.5          7           1
 G glycine             5.0         10           1
 H histidine           1.5          3           1
 I isoleucine          7.5         15           2
 K lysine              3.5          7           2
 L leucine            10.0         20           2
 M methionine          2.0          4           1
 N asparagine          5.0         10           1
 P proline             6.0         12           2
 Q glutamine           5.0         10           1
 R arginine            2.5          5           1
 S serine             13.9         28           2
 T threonine           4.0          8           2
 V valine              7.5         15           2
 W tryptophan          4.0          8           1
 Y tyrosine            3.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dendritic cell-associated C-type lectin 1 isoform b ... 
CLEC7A                0.944   dendritic cell-associated C-type lectin 1 isoform a ...
CLEC7A                0.798   dendritic cell-associated C-type lectin 1 isoform e ...
CLEC7A                0.558   dendritic cell-associated C-type lectin 1 isoform d ...
CLEC7A                0.503   dendritic cell-associated C-type lectin 1 isoform c ...
CLEC7A                0.283   dendritic cell-associated C-type lectin 1 isoform f ...
OLR1                  0.235   oxidized low density lipoprotein (lectin-like) recept...
CLEC1B                0.197   C-type lectin domain family 1, member B isoform a [...
CLEC1B                0.182   C-type lectin domain family 1, member B isoform b [...
CLEC12B               0.149   C-type lectin domain family 12, member B isoform 1 ...
CLEC1A                0.149   C-type lectin-like receptor-1 
CLEC9A                0.144   C-type lectin domain family 9, member A 
KLRC1                 0.126   killer cell lectin-like receptor subfamily C, member...
KLRC1                 0.126   killer cell lectin-like receptor subfamily C, member ...
KLRC2                 0.119   killer cell lectin-like receptor subfamily C, member...
KLRD1                 0.119   killer cell lectin-like receptor subfamily D, membe...
KLRD1                 0.119   killer cell lectin-like receptor subfamily D, member ...
KLRF1                 0.119   killer cell lectin-like receptor subfamily F, member ...
CLEC2L                0.114   C-type lectin domain family 2, member L 
KLRC3                 0.114   killer cell lectin-like receptor subfamily C, member...
KLRC3                 0.114   killer cell lectin-like receptor subfamily C, member...
CD69                  0.114   CD69 molecule 
KLRK1                 0.114   NKG2-D type II integral membrane protein 
CLEC4M                0.111   C-type lectin domain family 4, member M isoform 9 [...
CLEC4M                0.111   C-type lectin domain family 4, member M isoform 7 [...
CLEC4M                0.111   C-type lectin domain family 4, member M isoform 12 ...
CLEC4M                0.111   C-type lectin domain family 4, member M isoform 2 [...
KLRC1                 0.111   killer cell lectin-like receptor subfamily C, member...
KLRC1                 0.111   killer cell lectin-like receptor subfamily C, member ...
CLEC4M                0.111   C-type lectin domain family 4, member M isoform 8 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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