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Search of human proteins with 37655169
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|37655169 ring finger protein 135 isoform 2 [Homo sapiens]
(210 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|37655169 ring finger protein 135 isoform 2 [Homo sapiens] 437 e-123
gi|37655167 ring finger protein 135 isoform 1 [Homo sapiens] 357 3e-99
gi|38679905 tripartite motif-containing 65 [Homo sapiens] 64 9e-11
gi|68160937 tripartite motif-containing 25 [Homo sapiens] 62 5e-10
gi|148596968 tripartite motif-containing 8 [Homo sapiens] 62 5e-10
gi|54792146 tripartite motif-containing 47 [Homo sapiens] 57 9e-09
gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens] 57 1e-08
gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens] 57 1e-08
gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens] 57 1e-08
gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens] 57 1e-08
gi|21630277 tripartite motif-containing 11 [Homo sapiens] 56 3e-08
gi|217035095 tripartite motif-containing 62 [Homo sapiens] 55 3e-08
gi|30794216 tripartite motif-containing 56 [Homo sapiens] 55 3e-08
gi|7706091 bifunctional apoptosis regulator [Homo sapiens] 55 4e-08
gi|62865604 tripartite motif protein 31 [Homo sapiens] 54 7e-08
gi|37622899 ring finger protein 137 [Homo sapiens] 54 1e-07
gi|15208660 tripartite motif protein 21 [Homo sapiens] 52 3e-07
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s... 52 3e-07
gi|88953346 PREDICTED: Tripartite motif-containing protein 43-li... 52 5e-07
gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens] 52 5e-07
gi|20270353 tripartite motif-containing 43 [Homo sapiens] 52 5e-07
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s... 51 6e-07
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s... 51 6e-07
gi|157743261 tripartite motif-containing 75 [Homo sapiens] 51 8e-07
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s... 50 1e-06
gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo sa... 50 1e-06
gi|210147600 tripartite motif-containing 64 [Homo sapiens] 50 1e-06
gi|169202375 PREDICTED: tripartite motif-containing protein 64B-... 50 1e-06
gi|87080813 LON peptidase N-terminal domain and ring finger 1 [H... 50 1e-06
gi|19924163 muscle specific ring finger protein 1 [Homo sapiens] 50 2e-06
>gi|37655169 ring finger protein 135 isoform 2 [Homo sapiens]
Length = 210
Score = 437 bits (1125), Expect = e-123
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP 60
MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP
Sbjct: 1 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP 60
Query: 61 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP 120
TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP
Sbjct: 61 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP 120
Query: 121 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKENSWKPRL 180
ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKENSWKPRL
Sbjct: 121 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKENSWKPRL 180
Query: 181 PPHAHCLTRATLHSGELLGLLSGPSIQPLT 210
PPHAHCLTRATLHSGELLGLLSGPSIQPLT
Sbjct: 181 PPHAHCLTRATLHSGELLGLLSGPSIQPLT 210
>gi|37655167 ring finger protein 135 isoform 1 [Homo sapiens]
Length = 432
Score = 357 bits (917), Expect = 3e-99
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP 60
MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP
Sbjct: 1 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP 60
Query: 61 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP 120
TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP
Sbjct: 61 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP 120
Query: 121 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGK 172
ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGK
Sbjct: 121 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGK 172
>gi|38679905 tripartite motif-containing 65 [Homo sapiens]
Length = 517
Score = 63.9 bits (154), Expect = 9e-11
Identities = 36/93 (38%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 14 LAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQPHLR 73
L E+ L C IC GL P TLPCGH+FC C+ W D ACP CR+ LR
Sbjct: 5 LLEEKLTCAICLGLYQDPVTLPCGHNFCGACIRDWW---DRCGKACPECREPFPDGAELR 61
Query: 74 KNTLLQDLADKYRRAAREIQAGSDPAHCPCPGS 106
+N L + + RA G DP P P +
Sbjct: 62 RNVALSGVLEVV-RAGPARDPGPDPGPGPDPAA 93
>gi|68160937 tripartite motif-containing 25 [Homo sapiens]
Length = 630
Score = 61.6 bits (148), Expect = 5e-10
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 17 DDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQPHLRKNT 76
++L C IC P T PCGH+FC CL W + + + CP CR +P L KNT
Sbjct: 9 EELSCSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGS-PYLCPQCRAVYQARPQLHKNT 67
Query: 77 LLQDLADKYRRA--AREIQAG--SDPAHCPCPGSSS 108
+L ++ +++ +A ARE A + PA P ++
Sbjct: 68 VLCNVVEQFLQADLAREPPADVWTPPARASAPSPNA 103
>gi|148596968 tripartite motif-containing 8 [Homo sapiens]
Length = 551
Score = 61.6 bits (148), Expect = 5e-10
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 16 EDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQPHLRKN 75
E++L C IC + P LPC H+FCR C+ W A+D+ CP C Q Q+P L KN
Sbjct: 10 EEELICPICLHVFVEPVQLPCKHNFCRGCIGEAW-AKDSGLVRCPECNQAYNQKPGLEKN 68
Query: 76 TLLQDLADKYRRAAREIQAGSDPAHC 101
L ++ +K+ A ++ HC
Sbjct: 69 LKLTNIVEKFN--ALHVEKPPAALHC 92
>gi|54792146 tripartite motif-containing 47 [Homo sapiens]
Length = 638
Score = 57.4 bits (137), Expect = 9e-09
Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 21 CIICQGLLDWPATLPCGHSFCRHCLEALWGARDAR-------RWACPTCRQGAAQQPHLR 73
C IC L P TLPCGH+FC CL ALW R A CP C++ LR
Sbjct: 9 CPICLEPLREPVTLPCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQEPFPDGLQLR 68
Query: 74 KNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARP 116
KN L +L + + G PA P P + S + P
Sbjct: 69 KNHTLSELLQLRQGSGPGSGPGPAPALAPEPSAPSALPSVPEP 111
>gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens]
Length = 410
Score = 56.6 bits (135), Expect = 1e-08
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 14 LAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEA-LWGARDARRW-----ACPTCRQ--G 65
L E+DL C IC L D P LPC H+FC+ CLE L G+ W CPTCR+
Sbjct: 6 LLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKETS 65
Query: 66 AAQQPHLRKNTLLQDLADKYRR 87
A L+ N L+ + +KY +
Sbjct: 66 ATGINSLQVNYSLKGIVEKYNK 87
>gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 56.6 bits (135), Expect = 1e-08
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 14 LAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEA-LWGARDARRW-----ACPTCRQ--G 65
L E+DL C IC L D P LPC H+FC+ CLE L G+ W CPTCR+
Sbjct: 3 LLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKETS 62
Query: 66 AAQQPHLRKNTLLQDLADKYRR 87
A L+ N L+ + +KY +
Sbjct: 63 ATGINSLQVNYSLKGIVEKYNK 84
>gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 56.6 bits (135), Expect = 1e-08
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 14 LAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEA-LWGARDARRW-----ACPTCRQ--G 65
L E+DL C IC L D P LPC H+FC+ CLE L G+ W CPTCR+
Sbjct: 3 LLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKETS 62
Query: 66 AAQQPHLRKNTLLQDLADKYRR 87
A L+ N L+ + +KY +
Sbjct: 63 ATGINSLQVNYSLKGIVEKYNK 84
>gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 56.6 bits (135), Expect = 1e-08
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 14 LAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEA-LWGARDARRW-----ACPTCRQ--G 65
L E+DL C IC L D P LPC H+FC+ CLE L G+ W CPTCR+
Sbjct: 3 LLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKETS 62
Query: 66 AAQQPHLRKNTLLQDLADKYRR 87
A L+ N L+ + +KY +
Sbjct: 63 ATGINSLQVNYSLKGIVEKYNK 84
>gi|21630277 tripartite motif-containing 11 [Homo sapiens]
Length = 468
Score = 55.8 bits (133), Expect = 3e-08
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 16 EDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQPHLRKN 75
+++ C IC P CGH+FCR C+ WG + +ACP CR+ + Q +LR N
Sbjct: 11 QEEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEG-PYACPECRE-LSPQRNLRPN 68
Query: 76 TLLQDLADKYRR--AAREIQAGSDPAH 100
L +A+ RR + G PAH
Sbjct: 69 RPLAKMAEMARRLHPPSPVPQGVCPAH 95
>gi|217035095 tripartite motif-containing 62 [Homo sapiens]
Length = 475
Score = 55.5 bits (132), Expect = 3e-08
Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 23/152 (15%)
Query: 16 EDDLGCIICQGLLDWPATLPCGHSFCRHCLEALW------GARDARRWACPTCRQGAAQQ 69
+D+L C IC + P +L C H FCR C+ W GARD CP CR+ A +
Sbjct: 6 KDELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARD-----CPECRRTFA-E 59
Query: 70 PHLRKNTLLQDLADKY-----------RRAAREIQAGSDPAHCPCPGSSSLSSAAARPRR 118
P L + L ++ ++Y RRAAR QA + L P
Sbjct: 60 PALAPSLKLANIVERYSSFPLDAILNARRAARPCQAHDKVKLFCLTDRALLCFFCDEPAL 119
Query: 119 RPELQRVAVEKSITEVAQELTELVEHLVDIVR 150
+ Q ++ + E+ +EL + ++ L D R
Sbjct: 120 HEQHQVTGIDDAFDELQRELKDQLQALQDSER 151
>gi|30794216 tripartite motif-containing 56 [Homo sapiens]
Length = 755
Score = 55.5 bits (132), Expect = 3e-08
Identities = 40/110 (36%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 14 LAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQPH-- 71
L+ D L C IC L P TLPC H++C+ CL L D R CP CR+ P
Sbjct: 14 LSSDFLACKICLEQLRAPKTLPCLHTYCQDCLAQL---ADGGRVRCPECRETVPVPPEGV 70
Query: 72 --LRKNTLLQDLADKYR-RAAREIQAGSDPAHCPCP---GSSSLSSAAAR 115
+ N + L D + RA +++AG PA CP G+S+ A AR
Sbjct: 71 ASFKTNFFVNGLLDLVKARACGDLRAGK-PACALCPLVGGTSTGGPATAR 119
>gi|7706091 bifunctional apoptosis regulator [Homo sapiens]
Length = 450
Score = 55.1 bits (131), Expect = 4e-08
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 14 LAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCR---QGAAQQP 70
++ + C C +L P TL CGHSFCRHCL ALW A +++ CP CR +G +
Sbjct: 27 ISVSEFSCHCCYDILVNPTTLNCGHSFCRHCL-ALWWA-SSKKTECPECREKWEGFPKVS 84
Query: 71 HLRKNTLLQDLADKYRRAAREIQAGSD 97
L ++ + + D R +IQ +D
Sbjct: 85 ILLRDAIEKLFPDAIRLRFEDIQQNND 111
>gi|62865604 tripartite motif protein 31 [Homo sapiens]
Length = 425
Score = 54.3 bits (129), Expect = 7e-08
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 16 EDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQPHLRKN 75
++++ C IC +L P T+ CGH+FC C+ + G + CP C+ + ++ +R N
Sbjct: 11 QEEVICPICLDILQKPVTIDCGHNFCLKCITQI-GETSCGFFKCPLCKT-SVRKNAIRFN 68
Query: 76 TLLQDLADKYRR-AAREIQAGSDPAHCP 102
+LL++L +K + A E+Q+ A CP
Sbjct: 69 SLLRNLVEKIQALQASEVQSKRKEATCP 96
>gi|37622899 ring finger protein 137 [Homo sapiens]
Length = 485
Score = 53.9 bits (128), Expect = 1e-07
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 17 DDLGCIICQGLLDWPATLPCGHSFCRHCLEALW---GARDARRWACPTCRQGAAQQPHLR 73
+++ C IC L P ++ CGHSFC CL LW G + CP CR Q +LR
Sbjct: 12 EEVACPICMTFLREPMSIDCGHSFCHSCLSGLWEIPGESQNWGYTCPLCR-APVQPRNLR 70
Query: 74 KNTLLQDLADKYR 86
N L ++ +K R
Sbjct: 71 PNWQLANVVEKVR 83
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 52.4 bits (124), Expect = 3e-07
Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 24/182 (13%)
Query: 6 LGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQG 65
+ SA + + +++ C IC P ++ CGHSFC+ C+ + + CP CRQ
Sbjct: 1 MASAARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGS---VCPVCRQR 57
Query: 66 AAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPG----------SSSLSSAAAR 115
+ +LR N L ++ + + ++E + G+ C G +L A+
Sbjct: 58 FLLK-NLRPNRQLANMVNNLKEISQEAREGTQGERCAVHGERLHLFCEKDGKALCWVCAQ 116
Query: 116 PRRRPELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKENS 175
R+ + V +E E AQE E ++ + +R Q E E+ I K
Sbjct: 117 SRKHRDHAMVPLE----EAAQEYQEKLQVALGELRRKQ------ELAEKLEVEIAIKRAD 166
Query: 176 WK 177
WK
Sbjct: 167 WK 168
>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
sapiens]
Length = 493
Score = 52.4 bits (124), Expect = 3e-07
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 16/173 (9%)
Query: 16 EDDLGCIICQGLLDWPATLPCGHSFCRHCLEA--LWGARDARRWACPTCRQGAAQQPHLR 73
++++ C IC LL P +L CGHSFC+ CL A D +CP CR + Q ++R
Sbjct: 10 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI-SYQPENIR 68
Query: 74 KNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPR------RRPELQRVAV 127
N + +L +K R + G HC G L + R + R
Sbjct: 69 PNRHVANLVEKLREVKLSPE-GQKVDHCARHGEKLLLFCQEDGKVICWLCERSQEHRGHH 127
Query: 128 EKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKENSWKPRL 180
EVAQ E+ V + +L+ R + + E I ++ SWK ++
Sbjct: 128 TFPTEEVAQ------EYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQI 174
>gi|88953346 PREDICTED: Tripartite motif-containing protein
43-like protein 1 [Homo sapiens]
Length = 446
Score = 51.6 bits (122), Expect = 5e-07
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 16 EDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWA-CPTCRQGAAQQPHLRK 74
+ +L C+IC L P T+ CGHSFCR CL W +A+ A CP CR+ + + +
Sbjct: 10 QKELTCVICLNYLVDPVTICCGHSFCRPCLCLSW--EEAQSPANCPACREPSPKM-DFKT 66
Query: 75 NTLLQDLADKYRRAA 89
N LL++L R+A+
Sbjct: 67 NILLKNLVTIARKAS 81
>gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens]
Length = 882
Score = 51.6 bits (122), Expect = 5e-07
Identities = 38/100 (38%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 17 DDLGCIICQGLLDWPA-TLPCGHSFCRHCLEALWGARDARRWACPTCR-QGAAQQPHLRK 74
D L C +C LD A LPC H+FCR CLE++ +R R CP CR L
Sbjct: 53 DLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELR--CPECRILVGCGVDELPA 110
Query: 75 NTLLQDLADKYRRAARE-IQAGSDPAHCPCPGSSSLSSAA 113
N LL L D R+ R G P P PG S+ + A
Sbjct: 111 NILLVRLLDGIRQRPRAGTSPGGSPPARPIPGQSAAPTLA 150
>gi|20270353 tripartite motif-containing 43 [Homo sapiens]
Length = 446
Score = 51.6 bits (122), Expect = 5e-07
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 16 EDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWA-CPTCRQGAAQQPHLRK 74
+ +L C+IC L P T+ CGHSFCR CL W +A+ A CP CR+ + + +
Sbjct: 10 QKELTCVICLNYLVDPVTICCGHSFCRPCLCLSW--EEAQSPANCPACREPSPKM-DFKT 66
Query: 75 NTLLQDLADKYRRAA 89
N LL++L R+A+
Sbjct: 67 NILLKNLVTIARKAS 81
>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
sapiens]
Length = 326
Score = 51.2 bits (121), Expect = 6e-07
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 16/173 (9%)
Query: 16 EDDLGCIICQGLLDWPATLPCGHSFCRHCLEA--LWGARDARRWACPTCRQGAAQQPHLR 73
++++ C IC LL P +L CGHSFC+ CL A D +CP CR + Q ++R
Sbjct: 10 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI-SYQPENIR 68
Query: 74 KNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPR------RRPELQRVAV 127
N + ++ +K R + G HC G L + R + R
Sbjct: 69 PNRHVANIVEKLREVKLSPE-GQKVDHCARHGEKLLLFCQEDGKVICWLCERSQEHRGHH 127
Query: 128 EKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKENSWKPRL 180
EVAQ E+ V + +L+ R + + E I ++ SWK ++
Sbjct: 128 TFLTEEVAQ------EYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQI 174
>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
sapiens]
Length = 347
Score = 51.2 bits (121), Expect = 6e-07
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 16/173 (9%)
Query: 16 EDDLGCIICQGLLDWPATLPCGHSFCRHCLEA--LWGARDARRWACPTCRQGAAQQPHLR 73
++++ C IC LL P +L CGHSFC+ CL A D +CP CR + Q ++R
Sbjct: 10 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI-SYQPENIR 68
Query: 74 KNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPR------RRPELQRVAV 127
N + ++ +K R + G HC G L + R + R
Sbjct: 69 PNRHVANIVEKLREVKLSPE-GQKVDHCARHGEKLLLFCQEDGKVICWLCERSQEHRGHH 127
Query: 128 EKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKENSWKPRL 180
EVAQ E+ V + +L+ R + + E I ++ SWK ++
Sbjct: 128 TFLTEEVAQ------EYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQI 174
>gi|157743261 tripartite motif-containing 75 [Homo sapiens]
Length = 468
Score = 50.8 bits (120), Expect = 8e-07
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 21 CIICQGLLDWPATLPCGHSFCRHCLEALWGARDARR-WACPTCRQGAAQQPHLRKNTLL 78
C IC L P T+ CGH+FCR C++ W D + + CP CR Q+ H R NT L
Sbjct: 16 CSICLDYLSDPVTIECGHNFCRSCIQQSW--LDLQELFPCPVCRH-QCQEGHFRSNTQL 71
>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
sapiens]
Length = 500
Score = 50.4 bits (119), Expect = 1e-06
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 16 EDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQPHLRKN 75
+++L C IC P ++ CGH+FCR CL W A + CP CR +A LR N
Sbjct: 7 QEELTCPICLDYFQDPVSIECGHNFCRGCLHRNW-APGGGPFPCPECRHPSAPAA-LRPN 64
Query: 76 TLLQDLADKYRR 87
L L +K +R
Sbjct: 65 WALARLTEKTQR 76
>gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo
sapiens]
Length = 474
Score = 50.4 bits (119), Expect = 1e-06
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 16 EDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQPHLRKN 75
+++L C IC P ++ CGH+FCR CL W A + CP CR +A LR N
Sbjct: 7 QEELTCPICLDYFQDPVSIECGHNFCRGCLHRNW-APGGGPFPCPECRHPSAPAA-LRPN 64
Query: 76 TLLQDLADKYRR 87
L L +K +R
Sbjct: 65 WALARLTEKTQR 76
>gi|210147600 tripartite motif-containing 64 [Homo sapiens]
Length = 449
Score = 50.1 bits (118), Expect = 1e-06
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 16 EDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQPHLRKN 75
+++L C IC P T+ CGHSFCR CL L CP+CR+ +++P+ N
Sbjct: 10 QNELICCICVNYFIDPVTIDCGHSFCRPCL-CLCSEEGRAPMRCPSCRK-ISEKPNFNTN 67
Query: 76 TLLQDLADKYRRAAREIQAGSD 97
+L+ L+ R+ + SD
Sbjct: 68 VVLKKLSSLARQTRPQNINSSD 89
>gi|169202375 PREDICTED: tripartite motif-containing protein
64B-like [Homo sapiens]
Length = 449
Score = 50.1 bits (118), Expect = 1e-06
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 16 EDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQPHLRKN 75
+++L C IC P T+ CGHSFCR CL L CP+CR+ +++P+ N
Sbjct: 10 QNELICCICVNYFIDPVTIDCGHSFCRPCL-CLCSEEGRAPMRCPSCRK-TSEKPNFNTN 67
Query: 76 TLLQDLADKYRRAAREIQAGSD 97
+L+ L+ R+ + SD
Sbjct: 68 LVLKKLSSLARQTRPQNINSSD 89
>gi|87080813 LON peptidase N-terminal domain and ring finger 1 [Homo
sapiens]
Length = 773
Score = 50.1 bits (118), Expect = 1e-06
Identities = 39/115 (33%), Positives = 50/115 (43%), Gaps = 34/115 (29%)
Query: 5 GLG-SAVPVWLAEDDLG----CIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWAC 59
GLG SA PV A+ G C+ C+G L P T+PCGHS+CR CL R R C
Sbjct: 102 GLGWSAAPVAGADGGAGGLLRCLGCRGFLSEPVTVPCGHSYCRRCL------RRELRARC 155
Query: 60 PTCR-------------QGAAQQP----------HLRKNTLLQDLADKYRRAARE 91
CR +G A +P R + +L LA+K+ RE
Sbjct: 156 RLCRDRLPPATASATDAEGTAPRPPPLAAAIAASDFRTSVVLNHLAEKWFPGQRE 210
Score = 46.6 bits (109), Expect = 2e-05
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 1 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP 60
M L G + D C +C L P T PCGHSFC++CLE CP
Sbjct: 459 MFSLAYGDIPEELIDVSDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAP----YCP 514
Query: 61 TCRQGAAQQPHLRK---NTLLQDLADKY 85
C++ + R+ LL++L KY
Sbjct: 515 LCKESLKEYLADRRYCVTQLLEELIVKY 542
>gi|19924163 muscle specific ring finger protein 1 [Homo sapiens]
Length = 353
Score = 49.7 bits (117), Expect = 2e-06
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 20/108 (18%)
Query: 11 PVWLAEDDLGCIICQGLLDWPAT-LPCGHSFCRHCLEAL-------WGARDAR------R 56
P+ E L C IC + P LPC H+ CR C + W +R + R
Sbjct: 13 PMENLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWTSRGSSVSMSGGR 72
Query: 57 WACPTCRQGAAQQPH----LRKNTLLQDLADKYRR--AAREIQAGSDP 98
+ CPTCR H L++N L++++ D Y++ ++R +Q GS P
Sbjct: 73 FRCPTCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGSHP 120
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,149,612
Number of Sequences: 37866
Number of extensions: 404002
Number of successful extensions: 2301
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 2013
Number of HSP's gapped (non-prelim): 382
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.