Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 37620206
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|37620206 hypothetical protein LOC148423 [Homo sapiens]
(182 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|37620206 hypothetical protein LOC148423 [Homo sapiens] 382 e-106
gi|7657218 bromodomain-containing protein 4 isoform short [Homo ... 37 0.012
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 37 0.012
gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens] 35 0.027
gi|209862789 microtubule associated monoxygenase, calponin and L... 35 0.027
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 35 0.036
gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho... 34 0.061
gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo... 34 0.061
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 34 0.079
gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo ... 34 0.079
gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo ... 34 0.079
gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo ... 34 0.079
gi|4504425 high-mobility group box 1 [Homo sapiens] 33 0.10
gi|195976805 hypoxia up-regulated 1 precursor [Homo sapiens] 33 0.14
gi|5453832 hypoxia up-regulated 1 precursor [Homo sapiens] 33 0.14
gi|7108336 cholinergic receptor, muscarinic 5 [Homo sapiens] 33 0.14
gi|40807471 transcription termination factor, RNA polymerase II ... 33 0.14
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 33 0.18
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 33 0.18
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 33 0.18
gi|70608155 phosphodiesterase 3A [Homo sapiens] 32 0.30
gi|93277088 mediator of RNA polymerase II transcription, subunit... 32 0.30
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 32 0.30
gi|7661950 SH2 domain binding protein 1 [Homo sapiens] 32 0.30
gi|10947135 ATP-binding cassette, sub-family F, member 1 isoform... 31 0.51
gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform... 31 0.51
gi|23943787 dermatan sulfate epimerase-like [Homo sapiens] 31 0.67
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 31 0.67
gi|91208437 GEM interacting protein [Homo sapiens] 31 0.67
gi|140972063 protein phosphatase 1, regulatory subunit 9B [Homo ... 30 0.88
>gi|37620206 hypothetical protein LOC148423 [Homo sapiens]
Length = 182
Score = 382 bits (980), Expect = e-106
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 1 MAAEEKDPLSYFAAYGSSSSGSSDEEDNIEPEETSRRTPDPAKSAGGCRNKAEKRLPGPD 60
MAAEEKDPLSYFAAYGSSSSGSSDEEDNIEPEETSRRTPDPAKSAGGCRNKAEKRLPGPD
Sbjct: 1 MAAEEKDPLSYFAAYGSSSSGSSDEEDNIEPEETSRRTPDPAKSAGGCRNKAEKRLPGPD 60
Query: 61 ELFRSVTRPAFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPP 120
ELFRSVTRPAFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPP
Sbjct: 61 ELFRSVTRPAFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPP 120
Query: 121 ELDMAIKWSNIYEDNGDDAPQNAKKARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKK 180
ELDMAIKWSNIYEDNGDDAPQNAKKARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKK
Sbjct: 121 ELDMAIKWSNIYEDNGDDAPQNAKKARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKK 180
Query: 181 KK 182
KK
Sbjct: 181 KK 182
>gi|7657218 bromodomain-containing protein 4 isoform short [Homo
sapiens]
Length = 722
Score = 36.6 bits (83), Expect = 0.012
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 82 WERHVVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDMAIKWSNIYEDNGDDAPQ 141
+E K P+EP + S VPPP T+ PP D + S+ + + DD+ +
Sbjct: 450 FEMRFAKMPDEPEEPVVAVSSPAVPPP----TKVVAPPSSSDSSSDSSSDSDSSTDDSEE 505
Query: 142 NAKKARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKKKK 182
++A+ L E +E L++ E+ S+ ++ +P + K KK
Sbjct: 506 --ERAQRLAELQEQLKAVHEQLAALSQPQQNKPKKKEKDKK 544
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 36.6 bits (83), Expect = 0.012
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 82 WERHVVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDMAIKWSNIYEDNGDDAPQ 141
+E K P+EP + S VPPP T+ PP D + S+ + + DD+ +
Sbjct: 450 FEMRFAKMPDEPEEPVVAVSSPAVPPP----TKVVAPPSSSDSSSDSSSDSDSSTDDSEE 505
Query: 142 NAKKARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKKKK 182
++A+ L E +E L++ E+ S+ ++ +P + K KK
Sbjct: 506 --ERAQRLAELQEQLKAVHEQLAALSQPQQNKPKKKEKDKK 544
Score = 26.9 bits (58), Expect = 9.7
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 24/111 (21%)
Query: 10 SYFAAYGSSSSGSSDEEDNIEPEETSRRTPDPAKSAGGCRNKAEKRLPGPDELFRSVTRP 69
S + SS S SS E + + E++ +K G + +K + + P
Sbjct: 693 SKMKGFSSSESESSSESSSSDSEDSETEMAPKSKKKGHPGREQKKHHHHHHQQMQQAPAP 752
Query: 70 AFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPP 120
V + P PP++ PPP +++PPPP
Sbjct: 753 ----------------VPQQPPPPPQQ--------PPPPPPPQQQQQPPPP 779
>gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens]
Length = 669
Score = 35.4 bits (80), Expect = 0.027
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 86 VVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPPEL-DMAIKWSNIYEDNGDDAPQNAK 144
V P++PP PPPE KKPPPPE+ D+ K S + D +
Sbjct: 76 VTDLPKKPPPPEVTDLPKKPPPPEVTDLPKKPPPPEVTDLPKKPSKL---ELSDLSKKFP 132
Query: 145 KARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKK 180
+ P + L+ E E K EPG PA+K
Sbjct: 133 QLGATPFPRKPLQ--PEVGEAPLKASLPEPGAPARK 166
Score = 33.9 bits (76), Expect = 0.079
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 51 KAEKRLPGPDELFRSVTRPAFLYNPLNKQIDWERHVVKAP---------EEPPKEFKIWK 101
K + P P +L + +P F Q + H KAP + PP E
Sbjct: 21 KFQASQPEPSDLPKKPPKPEFGKLKKFSQPELSEHPKKAPLPEFGAVSLKPPPPEVTDLP 80
Query: 102 SNYVPPPETYTTEKKPPPPEL 122
PPPE KKPPPPE+
Sbjct: 81 KK-PPPPEVTDLPKKPPPPEV 100
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 35.4 bits (80), Expect = 0.027
Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 12/167 (7%)
Query: 17 SSSSGSSDEEDNIEPEETSRRTPDPAKSAGGCRNKAEKR----LPGPDELFRSVTRPAFL 72
SSSS S EE+ E EE R P GG K R L G E ++
Sbjct: 933 SSSSESEMEEEGEEEEEEPRL---PPSDLGGVPWKEAVRIHALLKGKSEEELEASKS--- 986
Query: 73 YNPLNKQIDWERHVVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDMAIKWSNIY 132
+ P N++ + E + EE + + +S+ P E+ + W++I
Sbjct: 987 FGPGNEEEEEEEEEYEEEEEEDYDEEEEESSEAGNQRLQQVMHAADPLEIQADVHWTHIR 1046
Query: 133 EDNGDD--APQNAKKARLLPEGEETLESDDEKDEHTSKKRKVEPGEP 177
E ++ AP + A P E LE D + + + E G+P
Sbjct: 1047 EREEEERMAPASESSASGAPLDENDLEEDVDSEPAEIEGEAAEDGDP 1093
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 35.0 bits (79), Expect = 0.036
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 23 SDEEDNIEPEETSRRTPDPAKSAGGCRNKAEKRLPGPDELFRSVTRPAFLYNPLNKQIDW 82
++E + P E S +P P +S +A + P P+EL PA +PL + +
Sbjct: 435 NEEMPLLPPPEESPLSPPPEESPTSPPPEASRLSPPPEEL------PA---SPLPEALHL 485
Query: 83 ERHVVKAPEEPPKEFKIWKSNYVPPPET-----------YTTEKKPPPPELD 123
R + ++P PP E +S PPPE+ E+ PP P L+
Sbjct: 486 SRPLEESPLSPPPE----ESPLSPPPESSPFSPLEESPLSPPEESPPSPALE 533
Score = 28.5 bits (62), Expect = 3.3
Identities = 29/111 (26%), Positives = 38/111 (34%), Gaps = 10/111 (9%)
Query: 17 SSSSGSSDEEDNIEPEETSRRTPDPAKSAGGCRNKAEKRLPGPDELFRSVTRPAFLYNPL 76
S S +E P E SR +P P S + P P+ S +P
Sbjct: 606 SPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPP 665
Query: 77 NKQIDWERHVVKAPEEPPKEFKIWKSNYVPPPETYTTEKKP------PPPE 121
++ ++P PP E S PPPE T P PPPE
Sbjct: 666 PEESPLSPPPEESPTSPPPE----ASRLSPPPEDSPTSPPPEDSPASPPPE 712
>gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Homo
sapiens]
Length = 1632
Score = 34.3 bits (77), Expect = 0.061
Identities = 43/177 (24%), Positives = 67/177 (37%), Gaps = 39/177 (22%)
Query: 17 SSSSGSSDEEDNIEPEETSRRTP-----------DPAKSAGGCRN-KAEKRLPGPDELFR 64
+ S S EED + E+ R T +P ++ G R K E+R ++ R
Sbjct: 203 AKSDESIKEEDKDQDEKRRRVTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLR 262
Query: 65 SVTRPAFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDM 124
S T+ P KQ K EEP +E + EKK D+
Sbjct: 263 SQTK-----EPTPKQ--------KLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDL 309
Query: 125 AIKWSNIYEDNGDDAPQNAKKARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKKK 181
A K P+ + ++ P+ + + ++DE K+RK P EP +KK
Sbjct: 310 AAK----------RRPEEKEPEKVNPQ----ISDEKDEDEKEEKRRKTTPKEPTEKK 352
>gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo
sapiens]
Length = 1616
Score = 34.3 bits (77), Expect = 0.061
Identities = 43/177 (24%), Positives = 67/177 (37%), Gaps = 39/177 (22%)
Query: 17 SSSSGSSDEEDNIEPEETSRRTP-----------DPAKSAGGCRN-KAEKRLPGPDELFR 64
+ S S EED + E+ R T +P ++ G R K E+R ++ R
Sbjct: 187 AKSDESIKEEDKDQDEKRRRVTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLR 246
Query: 65 SVTRPAFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDM 124
S T+ P KQ K EEP +E + EKK D+
Sbjct: 247 SQTK-----EPTPKQ--------KLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDL 293
Query: 125 AIKWSNIYEDNGDDAPQNAKKARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKKK 181
A K P+ + ++ P+ + + ++DE K+RK P EP +KK
Sbjct: 294 AAK----------RRPEEKEPEKVNPQ----ISDEKDEDEKEEKRRKTTPKEPTEKK 336
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 33.9 bits (76), Expect = 0.079
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 89 APEEPPKEFKIWKSNYVPPPETYTTEKKPPPPEL---DMAIK----WSNIYEDNGDDAPQ 141
AP+ PP F ++ S Y P + K P L D+A K W+N D D P
Sbjct: 94 APKRPPSAFFLFCSEYHP-------KIKGEHPGLSIGDVAKKLGEMWNNTAAD--DKQPG 144
Query: 142 NAKKARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKKKK 182
K A+L + E+ + + K + + K+ V E +KKKK
Sbjct: 145 EKKAAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKKK 185
>gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo
sapiens]
Length = 1135
Score = 33.9 bits (76), Expect = 0.079
Identities = 40/169 (23%), Positives = 61/169 (36%), Gaps = 24/169 (14%)
Query: 17 SSSSGSSDEEDNIEPEETSRRTPDPAKSAGGCRNKAE----KRLPGPDELFRSVTRPAFL 72
S S SSD E + E+ S+ P+ + GC+ E K+ P P T P +
Sbjct: 587 SEKSDSSDSEYISDDEQKSKNEPEDTEDKEGCQMDKEPSAVKKKPKP-------TNPVEI 639
Query: 73 YNPLNKQIDWERHVVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDMAIKWSNIY 132
L +P + K P PE +EK P P IK +
Sbjct: 640 KEELKS---------TSPASEKADPGAVKDKASPEPEKDFSEKAKPSPH---PIK-DKLK 686
Query: 133 EDNGDDAPQNAKKARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKKK 181
+ D+P E E ++ ++ +K K EP EP+ K+
Sbjct: 687 GKDETDSPTVHLGLDSDSESELVIDLGEDHSGREGRKNKKEPKEPSPKQ 735
>gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo
sapiens]
Length = 1188
Score = 33.9 bits (76), Expect = 0.079
Identities = 40/169 (23%), Positives = 61/169 (36%), Gaps = 24/169 (14%)
Query: 17 SSSSGSSDEEDNIEPEETSRRTPDPAKSAGGCRNKAE----KRLPGPDELFRSVTRPAFL 72
S S SSD E + E+ S+ P+ + GC+ E K+ P P T P +
Sbjct: 612 SEKSDSSDSEYISDDEQKSKNEPEDTEDKEGCQMDKEPSAVKKKPKP-------TNPVEI 664
Query: 73 YNPLNKQIDWERHVVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDMAIKWSNIY 132
L +P + K P PE +EK P P IK +
Sbjct: 665 KEELKS---------TSPASEKADPGAVKDKASPEPEKDFSEKAKPSPH---PIK-DKLK 711
Query: 133 EDNGDDAPQNAKKARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKKK 181
+ D+P E E ++ ++ +K K EP EP+ K+
Sbjct: 712 GKDETDSPTVHLGLDSDSESELVIDLGEDHSGREGRKNKKEPKEPSPKQ 760
>gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo
sapiens]
Length = 1160
Score = 33.9 bits (76), Expect = 0.079
Identities = 40/169 (23%), Positives = 61/169 (36%), Gaps = 24/169 (14%)
Query: 17 SSSSGSSDEEDNIEPEETSRRTPDPAKSAGGCRNKAE----KRLPGPDELFRSVTRPAFL 72
S S SSD E + E+ S+ P+ + GC+ E K+ P P T P +
Sbjct: 612 SEKSDSSDSEYISDDEQKSKNEPEDTEDKEGCQMDKEPSAVKKKPKP-------TNPVEI 664
Query: 73 YNPLNKQIDWERHVVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDMAIKWSNIY 132
L +P + K P PE +EK P P IK +
Sbjct: 665 KEELKS---------TSPASEKADPGAVKDKASPEPEKDFSEKAKPSPH---PIK-DKLK 711
Query: 133 EDNGDDAPQNAKKARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKKK 181
+ D+P E E ++ ++ +K K EP EP+ K+
Sbjct: 712 GKDETDSPTVHLGLDSDSESELVIDLGEDHSGREGRKNKKEPKEPSPKQ 760
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 33.5 bits (75), Expect = 0.10
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 89 APEEPPKEFKIWKSNYVPPPETYTTEKKPPPPEL---DMAIK----WSNIYEDNGDDAPQ 141
AP+ PP F ++ S Y P + K P L D+A K W+N D D P
Sbjct: 94 APKRPPSAFFLFCSEYRP-------KIKGEHPGLSIGDVAKKLGEMWNNTAAD--DKQPY 144
Query: 142 NAKKARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKKKK 182
K A+L + E+ + + K + + K+ V E +KKKK
Sbjct: 145 EKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKK 185
>gi|195976805 hypoxia up-regulated 1 precursor [Homo sapiens]
Length = 999
Score = 33.1 bits (74), Expect = 0.14
Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 19/150 (12%)
Query: 26 EDNIEPEETSRRTPDPAKSAGGCRNKAEKRLPGPDELFRSVTRPAFLYNPLNKQIDWERH 85
ED+ E E T + + S G + + G D + PA +K E+
Sbjct: 565 EDSAEEESTLTKLGNTISSLFGGGTTPDAKENGTDTVQEEEESPA----EGSKDEPGEQV 620
Query: 86 VVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDMAIKWSNIYEDNGD--DAPQNA 143
+K E P E + PPPE K PE + A + ++NGD +A + +
Sbjct: 621 ELKEEAEAPVE----DGSQPPPPEP----KGDATPEGEKATE-----KENGDKSEAQKPS 667
Query: 144 KKARLLPEGEETLESDDEKDEHTSKKRKVE 173
+KA PEG ++K + K+R VE
Sbjct: 668 EKAEAGPEGVAPAPEGEKKQKPARKRRMVE 697
>gi|5453832 hypoxia up-regulated 1 precursor [Homo sapiens]
Length = 999
Score = 33.1 bits (74), Expect = 0.14
Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 19/150 (12%)
Query: 26 EDNIEPEETSRRTPDPAKSAGGCRNKAEKRLPGPDELFRSVTRPAFLYNPLNKQIDWERH 85
ED+ E E T + + S G + + G D + PA +K E+
Sbjct: 565 EDSAEEESTLTKLGNTISSLFGGGTTPDAKENGTDTVQEEEESPA----EGSKDEPGEQV 620
Query: 86 VVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDMAIKWSNIYEDNGD--DAPQNA 143
+K E P E + PPPE K PE + A + ++NGD +A + +
Sbjct: 621 ELKEEAEAPVE----DGSQPPPPEP----KGDATPEGEKATE-----KENGDKSEAQKPS 667
Query: 144 KKARLLPEGEETLESDDEKDEHTSKKRKVE 173
+KA PEG ++K + K+R VE
Sbjct: 668 EKAEAGPEGVAPAPEGEKKQKPARKRRMVE 697
>gi|7108336 cholinergic receptor, muscarinic 5 [Homo sapiens]
Length = 532
Score = 33.1 bits (74), Expect = 0.14
Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 17/160 (10%)
Query: 33 ETSRRTPDPAKSAGGCR-NKAEKRLPGPDELFRS---VTRPAFLYNPLNKQIDW-----E 83
ET +RT D A G KAEKR P LFRS RP N Q W
Sbjct: 219 ETEKRTKDLADLQGSDSVTKAEKRKPAHRALFRSCLRCPRPTLAQRERN-QASWSSSRRS 277
Query: 84 RHVVKAPEEPPKEFKIW-KSNYVPPPETYTTEKKPPPPELDMAIKWSNIYEDNGDDAPQN 142
P + W K+ + +Y + + P D ++ +Y+ G ++P
Sbjct: 278 TSTTGKPSQATGPSANWAKAEQLTTCSSYPSSEDEDKPATDPVLQ--VVYKSQGKESPGE 335
Query: 143 AKKARLLPEGEET-LESDDEKDEHTSKKRKVEPGEPAKKK 181
A E EET ++++ EK ++ + + P + K
Sbjct: 336 EFSAE---ETEETFVKAETEKSDYDTPNYLLSPAAAHRPK 372
>gi|40807471 transcription termination factor, RNA polymerase II
[Homo sapiens]
Length = 1162
Score = 33.1 bits (74), Expect = 0.14
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 26/152 (17%)
Query: 32 EETSRRTPDPAKSAGGCRNKAEKRLPGPDELFRSVTRPAFLYNPLNKQI-DWERHVVKAP 90
E++S ++ D + + R K + LP S+++P PLNK+ +WE KA
Sbjct: 238 EKSSGKSQDVQRESEPLREKVTQLLPQNVHSHNSISKPQ-KGGPLNKEYTNWEAKETKAK 296
Query: 91 EEPP---KEFKIWKSNYVPPPETYTTEKKPPPPELDMAIKWSNIYEDNGDDAPQNAKKAR 147
+ P + + + ++ PET++ P P G A Q A A
Sbjct: 297 DGPSIQATQKSLPQGHFQERPETHSV----PAP---------------GGPAAQAAPAAP 337
Query: 148 --LLPEGEETLESDDEKDEHTSKKRKVEPGEP 177
L EG E S D+++E +PG P
Sbjct: 338 GLSLGEGREAATSSDDEEEDDVVFVSSKPGSP 369
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 32.7 bits (73), Expect = 0.18
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 89 APEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDMAIK----WSNIYEDNGDDAPQNAK 144
AP+ PP F ++ S Y P ++P D+A K W+N D D P +
Sbjct: 230 APKRPPSAFFLYFSEYGPK----IKGERPGLSFGDVAKKLGEMWNNTAAD--DKQPYEKR 283
Query: 145 KARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKKKK 182
A+L + E+ + + K +H + V +KKKK
Sbjct: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKK 321
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 32.7 bits (73), Expect = 0.18
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 89 APEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDMAIK----WSNIYEDNGDDAPQNAK 144
AP+ PP F ++ S Y P ++P D+A K W+N D D P +
Sbjct: 230 APKRPPSAFFLYFSEYGPK----IKGERPGLSFGDVAKKLGEMWNNTAAD--DKQPYEKR 283
Query: 145 KARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKKKK 182
A+L + E+ + + K +H + V +KKKK
Sbjct: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKK 321
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 32.7 bits (73), Expect = 0.18
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 89 APEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDMAIK----WSNIYEDNGDDAPQNAK 144
AP+ PP F ++ S Y P ++P D+A K W+N D D P +
Sbjct: 230 APKRPPSAFFLYFSEYGPK----IKGERPGLSFGDVAKKLGEMWNNTAAD--DKQPYEKR 283
Query: 145 KARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKKKK 182
A+L + E+ + + K +H + V +KKKK
Sbjct: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKK 321
>gi|70608155 phosphodiesterase 3A [Homo sapiens]
Length = 1141
Score = 32.0 bits (71), Expect = 0.30
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 127 KWSNIYEDNGD-DAPQNAKKARLLPEGEETLESDDEKDEHTSKKRKV 172
KW +++GD D P+ ++ P EET E+++ + T K+RK+
Sbjct: 1025 KWVEDSDESGDTDDPEEEEEEAPAPNEEETCENNESPKKKTFKRRKI 1071
>gi|93277088 mediator of RNA polymerase II transcription, subunit 12
homolog (S. cerevisiae)-like [Homo sapiens]
Length = 2145
Score = 32.0 bits (71), Expect = 0.30
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 54 KRLPGPDELFRSVTRPAFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKSNYVPPPETYTT 113
K+ P +LF PA L + +R V+K E+ ++ ++ +P P +Y
Sbjct: 1668 KQKVSPWDLFEGQKNPAPLSWAWFGTVRVDRRVIKYEEQ--HHLLLYHTHPMPKPRSYYL 1725
Query: 114 EKKPPPPELDMAIKWSNIYEDNGDDAPQNAKKARLLPEGEETLESDDEKDEHTSKKRKVE 173
+ P PPE + S + ++ K A L +G+ T DE+ + +KRK +
Sbjct: 1726 QPLPLPPEEEEEEPTSPVSQE------PERKSAELSDQGKTT---TDEEKKTKGRKRKTK 1776
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 32.0 bits (71), Expect = 0.30
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 102 SNYVPPPETYTTEKKPPPPELDMAIKWSNIYEDNGDDAPQNAKKARLLPEGEETLESDDE 161
S+ +P + YT E++ + N ED+G KK + G++ +
Sbjct: 53 SHCLPQKDLYTAEEEAATL-FPRKMTSHNGMEDSGGGGTGVKKKRKKKEPGDQEGAAKGS 111
Query: 162 KDEHTSKKRKVEPGEPAKKKK 182
KD KRK EP EP + +K
Sbjct: 112 KDREPKPKRKREPKEPKEPRK 132
>gi|7661950 SH2 domain binding protein 1 [Homo sapiens]
Length = 1173
Score = 32.0 bits (71), Expect = 0.30
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 131 IYEDNGDDAPQNAKKARLLPEGEETLESDDEKDEHTSKKRKVEP 174
+ +D DD P + KK R G E D+E E KKR+ P
Sbjct: 921 VNDDTDDDLPISKKKKRRKGSGSEQEGEDEEGGERKKKKRRRHP 964
Score = 31.6 bits (70), Expect = 0.39
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 133 EDNGDD---APQNAKKARLLPEGEETLESDDEKDEHTSKKRKVEPGEPAKKK 181
E G+D + KK R P+GEE SDD++ E+ K +K P + KKK
Sbjct: 944 EQEGEDEEGGERKKKKRRRHPKGEE--GSDDDETENGPKPKKRRPPKAEKKK 993
>gi|10947135 ATP-binding cassette, sub-family F, member 1 isoform b
[Homo sapiens]
Length = 807
Score = 31.2 bits (69), Expect = 0.51
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 25 EEDNIEPEETSRRTPDPAKSAGGCRNKA--EKRLP------GPDELFRSVTRPAFLYNPL 76
++ + E EE + P PAK NKA E++ P G +E + +P + L
Sbjct: 137 QDQSEEEEEEEKHPPKPAKPEKNRINKAVSEEQQPALKGKKGKEEKSKGKAKPQNKFAAL 196
Query: 77 -NKQIDWERHVVKAPEEPPKEFK 98
N++ D E ++K +EPPK+ K
Sbjct: 197 DNEEEDKEEEIIKE-KEPPKQGK 218
>gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform a
[Homo sapiens]
Length = 845
Score = 31.2 bits (69), Expect = 0.51
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 25 EEDNIEPEETSRRTPDPAKSAGGCRNKA--EKRLP------GPDELFRSVTRPAFLYNPL 76
++ + E EE + P PAK NKA E++ P G +E + +P + L
Sbjct: 137 QDQSEEEEEEEKHPPKPAKPEKNRINKAVSEEQQPALKGKKGKEEKSKGKAKPQNKFAAL 196
Query: 77 -NKQIDWERHVVKAPEEPPKEFK 98
N++ D E ++K +EPPK+ K
Sbjct: 197 DNEEEDKEEEIIKE-KEPPKQGK 218
>gi|23943787 dermatan sulfate epimerase-like [Homo sapiens]
Length = 1222
Score = 30.8 bits (68), Expect = 0.67
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 117 PPPPELDMAIKWSNIYEDNGDDAPQNAKKARLLPEGEETLE 157
PPP D A KW+ IY G++ P A L PE + E
Sbjct: 116 PPPKHADFAAKWNEIY---GNNLPPLALYCLLCPEDKVAFE 153
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 30.8 bits (68), Expect = 0.67
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 31 PEETSRRTPDPAKSAGGCRNKAEKRLPGPDELFRSVTRPAFLYNPLNKQIDWERHVVKAP 90
PE TS TP P+ + GG + P +++ + F+ ++ + V+K P
Sbjct: 489 PEGTSPPTPTPSTATGGPPEDSPTVAPKSTTFLKNIRQ--FIMPVVSAR---SSRVIKTP 543
Query: 91 -----EEPPKEFKIWKSNYVPPPETYTTEKKPPPPE 121
E+PPK K+ S + PP T PP P+
Sbjct: 544 RRFMDEDPPKPPKVEVSPVLRPPIT----TSPPVPQ 575
Score = 27.3 bits (59), Expect = 7.4
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 86 VVKAPEEPPKE--FKIWKSNYVPPPETYTTEKKPPPPELD 123
+++AP+ P E KI++S PPP +P PP D
Sbjct: 646 LLRAPQFTPSEAHLKIYESVLTPPPLGAPEAPEPEPPPAD 685
>gi|91208437 GEM interacting protein [Homo sapiens]
Length = 970
Score = 30.8 bits (68), Expect = 0.67
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 88 KAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDMAIKWSNIYEDNGDDAPQNA---K 144
+A E PP++ P P TT +PPPP LD + + D G D ++ +
Sbjct: 764 QATEPPPQDSS-------PAPGPLTTSSQPPPPHLDPDSQPPVLASDPGPDPQHHSTLEQ 816
Query: 145 KARLLPEGEETLESDDEKD 163
P T +SD +D
Sbjct: 817 HPTATPTEIPTPQSDQRED 835
>gi|140972063 protein phosphatase 1, regulatory subunit 9B [Homo
sapiens]
Length = 817
Score = 30.4 bits (67), Expect = 0.88
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 9 LSYFAAYGSSSSGSSDEEDNIEPEETSRRTPDPAKSAGGCRNKAEKRLPGPDELFRSVTR 68
+S ++ G S+GS+ EED+ + EE +P +E+ P P T
Sbjct: 395 VSAYSGLGEDSAGSALEEDDEDDEEDGEPPYEPESGCVEIPGLSEEEDPAPSRKIHFSTA 454
Query: 69 PAFLYNPLNKQIDWER 84
P +++ + + D++R
Sbjct: 455 PIQVFSTYSNE-DYDR 469
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.304 0.127 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,469,223
Number of Sequences: 37866
Number of extensions: 621411
Number of successful extensions: 2256
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 2047
Number of HSP's gapped (non-prelim): 306
length of query: 182
length of database: 18,247,518
effective HSP length: 96
effective length of query: 86
effective length of database: 14,612,382
effective search space: 1256664852
effective search space used: 1256664852
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.