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Search of human proteins with 37537722
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|37537722 agmatine ureohydrolase (agmatinase) [Homo sapiens]
(352 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|37537722 agmatine ureohydrolase (agmatinase) [Homo sapiens] 716 0.0
gi|4502215 arginase 2 precursor [Homo sapiens] 86 5e-17
gi|10947139 arginase 1 [Homo sapiens] 83 4e-16
gi|23510333 pygopus homolog 2 [Homo sapiens] 34 0.17
gi|239741968 PREDICTED: hypothetical protein [Homo sapiens] 33 0.50
gi|4504713 insulinoma-associated 1 [Homo sapiens] 33 0.50
gi|104294874 zinc finger protein 393 [Homo sapiens] 32 0.86
gi|122937440 multiple EGF-like-domains 9 [Homo sapiens] 32 0.86
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo ... 32 1.1
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 32 1.1
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 32 1.1
gi|55741630 hypothetical protein LOC198437 [Homo sapiens] 31 1.5
gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [H... 31 1.9
gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [H... 31 1.9
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 31 1.9
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 31 1.9
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 31 1.9
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 31 1.9
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 31 1.9
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 31 1.9
gi|239758095 PREDICTED: similar to major histocompatibility comp... 30 2.5
gi|239740749 PREDICTED: similar to major histocompatibility comp... 30 2.5
gi|91982772 mucin 17 [Homo sapiens] 30 2.5
gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... 30 3.3
gi|108860690 chromosome 16 open reading frame 7 [Homo sapiens] 30 3.3
gi|56676371 cleavage and polyadenylation specific factor 1, 160k... 30 3.3
gi|33149331 nucleoredoxin [Homo sapiens] 30 4.3
gi|239754415 PREDICTED: hypothetical protein XP_002345991 [Homo ... 30 4.3
gi|239748949 PREDICTED: hypothetical protein XP_002346841 [Homo ... 30 4.3
>gi|37537722 agmatine ureohydrolase (agmatinase) [Homo sapiens]
Length = 352
Score = 716 bits (1848), Expect = 0.0
Identities = 352/352 (100%), Positives = 352/352 (100%)
Query: 1 MLRLLASGCARGPGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMM 60
MLRLLASGCARGPGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMM
Sbjct: 1 MLRLLASGCARGPGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMM 60
Query: 61 RLPVQTSPEGLDAAFIGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALPFQSLM 120
RLPVQTSPEGLDAAFIGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALPFQSLM
Sbjct: 61 RLPVQTSPEGLDAAFIGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALPFQSLM 120
Query: 121 VADLGDVNVNLYNLQDSCRRIQEAYEKIVAAGCIPLTLGGDHTITYPILQAMAKKHGPVG 180
VADLGDVNVNLYNLQDSCRRIQEAYEKIVAAGCIPLTLGGDHTITYPILQAMAKKHGPVG
Sbjct: 121 VADLGDVNVNLYNLQDSCRRIQEAYEKIVAAGCIPLTLGGDHTITYPILQAMAKKHGPVG 180
Query: 181 LLHVDAHTDTTDKALGEKLYHGAPFRRCVDEGLLDCKRVVQIGIRGSSTTLDPYRYNRSQ 240
LLHVDAHTDTTDKALGEKLYHGAPFRRCVDEGLLDCKRVVQIGIRGSSTTLDPYRYNRSQ
Sbjct: 181 LLHVDAHTDTTDKALGEKLYHGAPFRRCVDEGLLDCKRVVQIGIRGSSTTLDPYRYNRSQ 240
Query: 241 GFRVVLAEDCWMKSLVPLMGEVRQQMGGKPIYISFDIDALDPAYAPGTGTPEIAGLTPSQ 300
GFRVVLAEDCWMKSLVPLMGEVRQQMGGKPIYISFDIDALDPAYAPGTGTPEIAGLTPSQ
Sbjct: 241 GFRVVLAEDCWMKSLVPLMGEVRQQMGGKPIYISFDIDALDPAYAPGTGTPEIAGLTPSQ 300
Query: 301 ALEIIRGCQGLNVMGCDLVEVSPPYDLSGNTALLAANLLFEMLCALPKVTTV 352
ALEIIRGCQGLNVMGCDLVEVSPPYDLSGNTALLAANLLFEMLCALPKVTTV
Sbjct: 301 ALEIIRGCQGLNVMGCDLVEVSPPYDLSGNTALLAANLLFEMLCALPKVTTV 352
>gi|4502215 arginase 2 precursor [Homo sapiens]
Length = 354
Score = 85.9 bits (211), Expect = 5e-17
Identities = 83/300 (27%), Positives = 126/300 (42%), Gaps = 33/300 (11%)
Query: 74 AFIGVPLDTGTSNRPGARFGPRRIREESVM-----LGTVNPSTGALPFQSLMVADL-GDV 127
A IG P G R G GP IRE +M LG G L F + DL ++
Sbjct: 27 AVIGAPFSQG-QKRKGVEHGPAAIREAGLMKRLSSLGCHLKDFGDLSFTPVPKDDLYNNL 85
Query: 128 NVNLYNLQDSCRRIQEAYEKIVAAGCIPLTLGGDHTITYPILQAMAKKHGPVGLLHVDAH 187
VN ++ + + + E + V+ G +TLGGDH++ + A+ + ++ VDAH
Sbjct: 86 IVNPRSVGLANQELAEVVSRAVSDGYSCVTLGGDHSLAIGTISGHARHCPDLCVVWVDAH 145
Query: 188 TD-TTDKALGEKLYHGAPFRRCVDE---------------GLLDCKRVVQIGIRGSSTTL 231
D T HG P + E + +V IG+R +
Sbjct: 146 ADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPGFSWIKPCISSASIVYIGLRD----V 201
Query: 232 DPYRYN--RSQGFRVVLAEDCWMKSLVPLMGEVRQQMGGK---PIYISFDIDALDPAYAP 286
DP + ++ + D + +M + GK PI++SFDIDA DP AP
Sbjct: 202 DPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIGKRQRPIHLSFDIDAFDPTLAP 261
Query: 287 GTGTPEIAGLTPSQALEIIRGCQGLNVMGC-DLVEVSPPYDLSGNTALLAANLLFEMLCA 345
TGTP + GLT + + I ++ DLVEV+P S A ANL +++ +
Sbjct: 262 ATGTPVVGGLTYREGMYIAEEIHNTGLLSALDLVEVNPQLATSEEEAKTTANLAVDVIAS 321
>gi|10947139 arginase 1 [Homo sapiens]
Length = 322
Score = 82.8 bits (203), Expect = 4e-16
Identities = 73/277 (26%), Positives = 120/277 (43%), Gaps = 36/277 (12%)
Query: 76 IGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALPFQSLMVADLGDVNVNLYNLQ 135
IG P G R G GP +R+ ++ + L AD+ N + + +
Sbjct: 11 IGAPFSKGQP-RGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIP--NDSPFQIV 67
Query: 136 DSCRRIQEAYEKIVAA-------GCIPLTLGGDHTITYPILQAMAKKHGPVGLLHVDAHT 188
+ R + +A E++ G I L LGGDH++ + A+ H +G++ VDAHT
Sbjct: 68 KNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHT 127
Query: 189 D-TTDKALGEKLYHGAPFRRCVDE---------------GLLDCKRVVQIGIRGSSTTLD 232
D T HG P + E + K +V IG+R +D
Sbjct: 128 DINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRD----VD 183
Query: 233 PYRYN--RSQGFRVVLAEDCWMKSLVPLMGEVRQQMGGK---PIYISFDIDALDPAYAPG 287
P + ++ G + + + +M E + G+ PI++SFD+D LDP++ P
Sbjct: 184 PGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPA 243
Query: 288 TGTPEIAGLTPSQALEIIRGCQGLNVM-GCDLVEVSP 323
TGTP + GLT + L I ++ G D++EV+P
Sbjct: 244 TGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNP 280
>gi|23510333 pygopus homolog 2 [Homo sapiens]
Length = 406
Score = 34.3 bits (77), Expect = 0.17
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 11/106 (10%)
Query: 13 PGPGVGARPAAGLFHPGRRQSRQASDAPRNQ---PPSPEFVARPVGVCSMMRLPVQTSPE 69
P G G P + P Q + P Q PPS + + PVG M P P
Sbjct: 148 PPQGPGYPPPGNMNFPS-----QPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPP 202
Query: 70 GLDAAFIGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALP 115
A +G P + +PGA FGP ++ L ++ P+T P
Sbjct: 203 ---RAELGPPSLSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFP 245
>gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 32.7 bits (73), Expect = 0.50
Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 16/109 (14%)
Query: 18 GARPAAGLFHPGRRQSRQASDAPR--------NQPPSPEFVARPVGVCSMMRLPVQTSPE 69
GA PA HPGR R ASD R + E V R + + P +P
Sbjct: 122 GASPAGARSHPGRASRRGASDRARCARGLGGPRVAAASELVRRGLASGAARARPASPAPA 181
Query: 70 GLDAAFIGVPLDTGTSNRPGARFGP---RRIREESVMLGTVNPSTGALP 115
L +G G + R AR P RR R P G+LP
Sbjct: 182 RLLPLAVGASAAAGDTRRTEARAEPSPSRRRRRRCCA-----PLPGSLP 225
>gi|4504713 insulinoma-associated 1 [Homo sapiens]
Length = 510
Score = 32.7 bits (73), Expect = 0.50
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 10 ARGPGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSM-MRLPVQTSP 68
ARGPGPG PAA L PG+R + P + +P + + V TSP
Sbjct: 180 ARGPGPGPPLPPAAALRPPGKRPPPPTAAEPPAKAVKAPGAKKPKAIRKLHFEDEVTTSP 239
Query: 69 EGLDAAFIGVPLDTGTSNRPGARFG 93
+G+ + G P R G
Sbjct: 240 ------VLGLKIKEGPVEAPRGRAG 258
>gi|104294874 zinc finger protein 393 [Homo sapiens]
Length = 389
Score = 32.0 bits (71), Expect = 0.86
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 40 PRNQPPSPEFVARPVGVCSMMRLPVQTSPEGLD-AAFIGVPLDTGTSNRPGARFGPRRIR 98
P +P P VARP G +R+P P GL +A G+P+ + T N P G +
Sbjct: 134 PVGEPNIPR-VARPFG--GNLRMP----PNGLPVSASTGIPIMSHTGNPPVPYPGLSTVP 186
Query: 99 EESVMLGTVNPSTGA 113
+ +LG PST A
Sbjct: 187 SDETLLGPTVPSTEA 201
>gi|122937440 multiple EGF-like-domains 9 [Homo sapiens]
Length = 639
Score = 32.0 bits (71), Expect = 0.86
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 13 PGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMMRLPVQT---SPE 69
PGPG+ P+ HP R + + APR PP V RP+ S + P T +
Sbjct: 47 PGPGLRGEPS----HPFPRATAPTAQAPRTGPPRAT-VHRPLAATSPAQSPETTPLWATA 101
Query: 70 GLDAAFIGVPLDTGTSNRPGA 90
G + PL + P A
Sbjct: 102 GPSSTTFQAPLGPSPTTPPAA 122
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 31.6 bits (70), Expect = 1.1
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 11 RGPGPGVGARPAAGLFHPGRRQSRQASDAPRNQP-PSPEFVARPVGVCSMMRLPVQTSPE 69
R PGPGV A A+ G++++ ++++ P +P P+P + P G P P
Sbjct: 54 RRPGPGVSAVGAS-----GQQRAPESNERPAEEPTPAPMPSSAPRGPTE----PALRRPS 104
Query: 70 GLDAAFIGVPLDTGTSNRPGARFGP 94
D PL G S+ PGA P
Sbjct: 105 SADR-----PLAPGPSSSPGAGRAP 124
>gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo
sapiens]
Length = 319
Score = 31.6 bits (70), Expect = 1.1
Identities = 39/112 (34%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Query: 7 SGCARGPGP-GVGARPAAGLFHPGR--RQSRQASDAPRNQPP-SPEFVARPVGVCSMMRL 62
+G GP P G+G RP G R+S + PR QPP SP V +G +R+
Sbjct: 209 AGPRPGPEPAGLGRRPCPYEQAQGAMGRRSSEGPPGPRTQPPSSPASVYHVLGRGDPLRV 268
Query: 63 P--VQTSPEGLDAAFIGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTG 112
P +Q L P TS P + PRR S LGT PSTG
Sbjct: 269 PRCLQRPLSPLPHVGDAPPRAWVTSGLP--QPPPRR----SGALGTPRPSTG 314
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 31.6 bits (70), Expect = 1.1
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 11 RGPGPGVGARPAAGLFHPGRRQSRQASDAPRNQP-PSPEFVARPVGVCSMMRLPVQTSPE 69
R PGPGV A A+ G++++ ++++ P +P P+P + P G P P
Sbjct: 157 RRPGPGVSAVGAS-----GQQRAPESNERPAEEPTPAPMPSSAPRGPTE----PALRRPS 207
Query: 70 GLDAAFIGVPLDTGTSNRPGARFGP 94
D PL G S+ PGA P
Sbjct: 208 SADR-----PLAPGPSSSPGAGRAP 227
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 31.6 bits (70), Expect = 1.1
Identities = 30/95 (31%), Positives = 35/95 (36%), Gaps = 13/95 (13%)
Query: 7 SGCARGPGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMMRLPVQT 66
S R PGPGV A A G Q R A ++ PS + P G P
Sbjct: 82 SAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPS----SAPRGPTE----PAFR 133
Query: 67 SPEGLDAAFIGVPLDTGTSNRPGARFGPRRIREES 101
P D PL G S+ PGA PR + S
Sbjct: 134 RPSSADR-----PLAPGPSSSPGAGRAPRAMASPS 163
>gi|55741630 hypothetical protein LOC198437 [Homo sapiens]
Length = 240
Score = 31.2 bits (69), Expect = 1.5
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 18 GARPAAGLFHPGRRQSRQ-ASDAPRNQPPSPEFVARPVGVCSMMRLPVQ 65
G R +G PG Q + A AP +PP P + P G+ +M LP Q
Sbjct: 12 GPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQGLAAM--LPAQ 58
>gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [Homo
sapiens]
Length = 756
Score = 30.8 bits (68), Expect = 1.9
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 10 ARGPGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMMRLPV 64
+R GP G + + G +HPGR++S+ + R+ E + PV S+ R P+
Sbjct: 302 SRDSGPNGGFQ-SGGSYHPGRKRSKTQTPQQRSVSSQEEEHSSPVKAPSVKRTPM 355
>gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [Homo
sapiens]
Length = 645
Score = 30.8 bits (68), Expect = 1.9
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 10 ARGPGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMMRLPV 64
+R GP G + + G +HPGR++S+ + R+ E + PV S+ R P+
Sbjct: 191 SRDSGPNGGFQ-SGGSYHPGRKRSKTQTPQQRSVSSQEEEHSSPVKAPSVKRTPM 244
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 30.8 bits (68), Expect = 1.9
Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 25/140 (17%)
Query: 12 GPGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMMRLPVQTSPEGL 71
GP P V A PA L PG R +R S R PP P A P P P G
Sbjct: 70 GPPP-VLASPAGHL--PGGRTARWCSGRARRPPPQPSRPAPPPPA------PPSALPRGG 120
Query: 72 DAAFIGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALPFQSLMVADLGDVNVNL 131
AA G P G+ R G R+R + V P ++L + D V
Sbjct: 121 RAARAGGP---GSRARAAGARG-CRLRSQLV------------PVRALGLGHRSDELVRF 164
Query: 132 YNLQDSCRRIQEAYEKIVAA 151
SCRR + ++ +A+
Sbjct: 165 RFCSGSCRRARSPHDLSLAS 184
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 30.8 bits (68), Expect = 1.9
Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 25/140 (17%)
Query: 12 GPGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMMRLPVQTSPEGL 71
GP P V A PA L PG R +R S R PP P A P P P G
Sbjct: 53 GPPP-VLASPAGHL--PGGRTARWCSGRARRPPPQPSRPAPPPPA------PPSALPRGG 103
Query: 72 DAAFIGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALPFQSLMVADLGDVNVNL 131
AA G P G+ R G R+R + V P ++L + D V
Sbjct: 104 RAARAGGP---GSRARAAGARG-CRLRSQLV------------PVRALGLGHRSDELVRF 147
Query: 132 YNLQDSCRRIQEAYEKIVAA 151
SCRR + ++ +A+
Sbjct: 148 RFCSGSCRRARSPHDLSLAS 167
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 30.8 bits (68), Expect = 1.9
Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 25/140 (17%)
Query: 12 GPGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMMRLPVQTSPEGL 71
GP P V A PA L PG R +R S R PP P A P P P G
Sbjct: 61 GPPP-VLASPAGHL--PGGRTARWCSGRARRPPPQPSRPAPPPPA------PPSALPRGG 111
Query: 72 DAAFIGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALPFQSLMVADLGDVNVNL 131
AA G P G+ R G R+R + V P ++L + D V
Sbjct: 112 RAARAGGP---GSRARAAGARG-CRLRSQLV------------PVRALGLGHRSDELVRF 155
Query: 132 YNLQDSCRRIQEAYEKIVAA 151
SCRR + ++ +A+
Sbjct: 156 RFCSGSCRRARSPHDLSLAS 175
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 30.8 bits (68), Expect = 1.9
Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 25/140 (17%)
Query: 12 GPGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMMRLPVQTSPEGL 71
GP P V A PA L PG R +R S R PP P A P P P G
Sbjct: 53 GPPP-VLASPAGHL--PGGRTARWCSGRARRPPPQPSRPAPPPPA------PPSALPRGG 103
Query: 72 DAAFIGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALPFQSLMVADLGDVNVNL 131
AA G P G+ R G R+R + V P ++L + D V
Sbjct: 104 RAARAGGP---GSRARAAGARG-CRLRSQLV------------PVRALGLGHRSDELVRF 147
Query: 132 YNLQDSCRRIQEAYEKIVAA 151
SCRR + ++ +A+
Sbjct: 148 RFCSGSCRRARSPHDLSLAS 167
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 30.8 bits (68), Expect = 1.9
Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 25/140 (17%)
Query: 12 GPGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMMRLPVQTSPEGL 71
GP P V A PA L PG R +R S R PP P A P P P G
Sbjct: 61 GPPP-VLASPAGHL--PGGRTARWCSGRARRPPPQPSRPAPPPPA------PPSALPRGG 111
Query: 72 DAAFIGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALPFQSLMVADLGDVNVNL 131
AA G P G+ R G R+R + V P ++L + D V
Sbjct: 112 RAARAGGP---GSRARAAGARG-CRLRSQLV------------PVRALGLGHRSDELVRF 155
Query: 132 YNLQDSCRRIQEAYEKIVAA 151
SCRR + ++ +A+
Sbjct: 156 RFCSGSCRRARSPHDLSLAS 175
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 30.8 bits (68), Expect = 1.9
Identities = 38/123 (30%), Positives = 51/123 (41%), Gaps = 20/123 (16%)
Query: 11 RGPGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMMRLP------- 63
+GP P RP A PG R +R+ + ++ P ARP V LP
Sbjct: 2052 QGPAPA-RQRPPAARPSPGERPARRTTSESPSRLPVRAPAARPETVKRYASLPHISVARR 2110
Query: 64 ----VQTSPEGLDAA---FIGVPLDTGTSNRPGARFGPRRIREESV--MLGTVNPSTGAL 114
V +P DAA G P PG + RRIR+E V +L + P+T AL
Sbjct: 2111 PDGAVPAAPASADAARRSSDGEPRPLPRVAAPGTTW--RRIRDEDVPHILRSTLPAT-AL 2167
Query: 115 PFQ 117
P +
Sbjct: 2168 PLR 2170
>gi|239758095 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 30.4 bits (67), Expect = 2.5
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 106 TVNPS-TGALPFQSLMVADLGDVNVNLYNLQDSCRRIQEAYEKIVAAGCIPLTLGGDHTI 164
T++PS T AL +L+V + D Y Q R + E+ PL GD T
Sbjct: 132 TISPSRTEALNHHNLLVCSVTD----FYPAQIKVRWFRNGQEETAGVVSTPLIRNGDWTF 187
Query: 165 TYPILQAMAKKHGPVGLLHVD 185
++ M + G V HV+
Sbjct: 188 QILVMLEMTPQRGDVYTCHVE 208
>gi|239740749 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 30.4 bits (67), Expect = 2.5
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 106 TVNPS-TGALPFQSLMVADLGDVNVNLYNLQDSCRRIQEAYEKIVAAGCIPLTLGGDHTI 164
T++PS T AL +L+V + D Y Q R + E+ PL GD T
Sbjct: 132 TISPSRTEALNHHNLLVCSVTD----FYPAQIKVRWFRNGQEETAGVVSTPLIRNGDWTF 187
Query: 165 TYPILQAMAKKHGPVGLLHVD 185
++ M + G V HV+
Sbjct: 188 QILVMLEMTPQRGDVYTCHVE 208
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 30.4 bits (67), Expect = 2.5
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 55 GVCSMMRLPVQTSPEGLDAA--FIGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTG 112
G + +PV T+P A P+DT T A E + + T PS G
Sbjct: 1394 GTTPLTSIPVSTTPVVSSEASTLSATPVDTSTPGTTSAEATSSPTTAEGISIPTSTPSEG 1453
Query: 113 ALPFQSLMVAD 123
P +S+ V++
Sbjct: 1454 KTPLKSIPVSN 1464
>gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo
sapiens]
Length = 3312
Score = 30.0 bits (66), Expect = 3.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 6 ASGCARGPGPGVGARPAAGLFHPGRRQSRQASDAPRNQP 44
+SG GPG+G R + GRRQS + S P QP
Sbjct: 67 SSGVREDGGPGLGVREPIFVGLRGRRQSARNSRGPPEQP 105
>gi|108860690 chromosome 16 open reading frame 7 [Homo sapiens]
Length = 631
Score = 30.0 bits (66), Expect = 3.3
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 9 CARGPGPGVGA-RPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMMRLPVQTS 67
C P PG RP+ L A+ P++ PP+P PVG S P+ +
Sbjct: 314 CPPTPNPGSRRLRPSQSLHCMLSPPEPSAAPRPQDSPPTPPLQPGPVGSPS----PLGDT 369
Query: 68 PEGL---DAAFIGVPLDTGTSNRPG 89
GL D++F + GTS R G
Sbjct: 370 ASGLPDKDSSFEDLEQFLGTSERQG 394
>gi|56676371 cleavage and polyadenylation specific factor 1, 160kDa
[Homo sapiens]
Length = 1443
Score = 30.0 bits (66), Expect = 3.3
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 22 AAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMMR 61
+ LF P + ++R++S P ++ P+P F A P C ++R
Sbjct: 751 SGSLFSPSKEEARRSSQPPADRDPAP-FRAEPTHWCLLVR 789
>gi|33149331 nucleoredoxin [Homo sapiens]
Length = 435
Score = 29.6 bits (65), Expect = 4.3
Identities = 49/190 (25%), Positives = 66/190 (34%), Gaps = 65/190 (34%)
Query: 5 LASGCARGPGPGVGARPAAG---------LFHPGRRQSRQASDAPRNQP----------- 44
L A GPGPG GA AA +F + RQ D R+ P
Sbjct: 60 LRGDAAAGPGPGAGAGAAAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHR 119
Query: 45 -------------PSPEFVARPVG--VCSMMRLPVQTSPEGLDAAFIGVPLDTGTSNRPG 89
PS F+ G VC L ++ PEGL+
Sbjct: 120 KLKLWNKYRISNIPSLIFLDATTGKVVCRNGLLVIRDDPEGLEFP--------------- 164
Query: 90 ARFGPRRIREESVMLGTVNPSTGALPFQSLMVADLGDVNVNLYNLQDSC-------RRIQ 142
+GP+ RE V+ G + + G QSL + L +V +Y C R +
Sbjct: 165 --WGPKPFRE--VIAGPLLRNNG----QSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLV 216
Query: 143 EAYEKIVAAG 152
E+Y KI AG
Sbjct: 217 ESYRKIKEAG 226
>gi|239754415 PREDICTED: hypothetical protein XP_002345991 [Homo
sapiens]
Length = 205
Score = 29.6 bits (65), Expect = 4.3
Identities = 38/115 (33%), Positives = 49/115 (42%), Gaps = 27/115 (23%)
Query: 6 ASGCARGPG------------PGVGARPAAGLFHPGR--RQSRQASDAPRNQPP-SPE-- 48
A+G ARG G PG GA+PAA PG SR D+P PP +PE
Sbjct: 73 AAGEARGSGFTRQALSRSPAEPGPGAQPAALRSQPGTWLSVSRPRRDSPEGYPPETPEES 132
Query: 49 -------FVARPVGVCSMMRLPVQTSPEGLDAAFIGVPLDTGTSNRPGARFGPRR 96
+ARP S RL ++ L + +P+ T RPG+R P R
Sbjct: 133 CAARPSSSLARPSTYRSQPRL--RSLRRRLRSLQSQLPV-LLTPGRPGSRPPPNR 184
>gi|239748949 PREDICTED: hypothetical protein XP_002346841 [Homo
sapiens]
Length = 205
Score = 29.6 bits (65), Expect = 4.3
Identities = 38/115 (33%), Positives = 49/115 (42%), Gaps = 27/115 (23%)
Query: 6 ASGCARGPG------------PGVGARPAAGLFHPGR--RQSRQASDAPRNQPP-SPE-- 48
A+G ARG G PG GA+PAA PG SR D+P PP +PE
Sbjct: 73 AAGEARGSGFTRQALSRSPAEPGPGAQPAALRSQPGTWLSVSRPRRDSPEGYPPETPEES 132
Query: 49 -------FVARPVGVCSMMRLPVQTSPEGLDAAFIGVPLDTGTSNRPGARFGPRR 96
+ARP S RL ++ L + +P+ T RPG+R P R
Sbjct: 133 CAARPSSSLARPSTYRSQPRL--RSLRRRLRSLQSQLPV-LLTPGRPGSRPPPNR 184
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.139 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,022,276
Number of Sequences: 37866
Number of extensions: 753924
Number of successful extensions: 2501
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 2464
Number of HSP's gapped (non-prelim): 80
length of query: 352
length of database: 18,247,518
effective HSP length: 103
effective length of query: 249
effective length of database: 14,347,320
effective search space: 3572482680
effective search space used: 3572482680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.