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Search of human proteins with 37537558
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|37537558 nuclear apoptosis inducing factor 1 [Homo sapiens]
(327 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|37537558 nuclear apoptosis inducing factor 1 [Homo sapiens] 644 0.0
gi|223972648 t-SNARE domain containing 1 [Homo sapiens] 68 1e-11
gi|60460889 Myb protein P42POP [Homo sapiens] 62 5e-10
gi|58761537 hypothetical protein LOC84437 [Homo sapiens] 43 4e-04
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] 42 7e-04
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] 42 7e-04
gi|4885243 FOS-like antigen 1 [Homo sapiens] 41 0.002
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 39 0.006
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 39 0.006
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens] 39 0.008
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 38 0.014
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 38 0.014
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 38 0.014
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 38 0.014
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 38 0.014
gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo ... 37 0.018
gi|19718780 semaphorin 6B precursor [Homo sapiens] 37 0.024
gi|13994190 frizzled 8 [Homo sapiens] 37 0.031
gi|119220564 one cut domain, family member 2 [Homo sapiens] 37 0.031
gi|113419909 PREDICTED: hypothetical protein [Homo sapiens] 36 0.041
gi|91208420 bassoon protein [Homo sapiens] 36 0.041
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 36 0.041
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 36 0.041
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 36 0.041
gi|205277396 dynactin 1 isoform 4 [Homo sapiens] 36 0.053
gi|205277392 dynactin 1 isoform 3 [Homo sapiens] 36 0.053
gi|13259508 dynactin 1 isoform 2 [Homo sapiens] 36 0.053
gi|13259510 dynactin 1 isoform 1 [Homo sapiens] 36 0.053
gi|98986457 host cell factor 1 [Homo sapiens] 36 0.053
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 36 0.053
>gi|37537558 nuclear apoptosis inducing factor 1 [Homo sapiens]
Length = 327
Score = 644 bits (1661), Expect = 0.0
Identities = 327/327 (100%), Positives = 327/327 (100%)
Query: 1 MAVPAKKRKMNFSEREVEIIVEELELKKHLLVNHFNAGVPLAAKSAAWHGILRRVNAVAT 60
MAVPAKKRKMNFSEREVEIIVEELELKKHLLVNHFNAGVPLAAKSAAWHGILRRVNAVAT
Sbjct: 1 MAVPAKKRKMNFSEREVEIIVEELELKKHLLVNHFNAGVPLAAKSAAWHGILRRVNAVAT 60
Query: 61 CRRELPEVKKKWSDLKTEVRRKVAQVRAAVEGGEAPGPTEEDGAGGPGTGGGSGGGGPAV 120
CRRELPEVKKKWSDLKTEVRRKVAQVRAAVEGGEAPGPTEEDGAGGPGTGGGSGGGGPAV
Sbjct: 61 CRRELPEVKKKWSDLKTEVRRKVAQVRAAVEGGEAPGPTEEDGAGGPGTGGGSGGGGPAV 120
Query: 121 APVLLTPMQQRICNLLGEATIISLPSTTEIHPVALGPSATAAAATVTLTQIPTETTYHTL 180
APVLLTPMQQRICNLLGEATIISLPSTTEIHPVALGPSATAAAATVTLTQIPTETTYHTL
Sbjct: 121 APVLLTPMQQRICNLLGEATIISLPSTTEIHPVALGPSATAAAATVTLTQIPTETTYHTL 180
Query: 181 EEGVVEYCTAEAPPPLPPETPVDMMAQHADTSVKPQALKSRIALNSAKLIQEQRVTNLHV 240
EEGVVEYCTAEAPPPLPPETPVDMMAQHADTSVKPQALKSRIALNSAKLIQEQRVTNLHV
Sbjct: 181 EEGVVEYCTAEAPPPLPPETPVDMMAQHADTSVKPQALKSRIALNSAKLIQEQRVTNLHV 240
Query: 241 KEIAQHLEQQNDLLQMIRRSQEVQACAQERQAQAMEGTQAALSVLIQVLRPMIKDFRRYL 300
KEIAQHLEQQNDLLQMIRRSQEVQACAQERQAQAMEGTQAALSVLIQVLRPMIKDFRRYL
Sbjct: 241 KEIAQHLEQQNDLLQMIRRSQEVQACAQERQAQAMEGTQAALSVLIQVLRPMIKDFRRYL 300
Query: 301 QSNTANPAPASDPGQVAQNGQPDSIIQ 327
QSNTANPAPASDPGQVAQNGQPDSIIQ
Sbjct: 301 QSNTANPAPASDPGQVAQNGQPDSIIQ 327
>gi|223972648 t-SNARE domain containing 1 [Homo sapiens]
Length = 513
Score = 67.8 bits (164), Expect = 1e-11
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 26/157 (16%)
Query: 5 AKKRKMNFSEREVEIIVEELELKKHLLVNHFNAGVPLAAKSAAWHGILRRVNAVATCRRE 64
AKKRK NF +E E++V ++ LL + W IL+ VNA+ CRR+
Sbjct: 121 AKKRKPNFCPQETEVLVSKVSKHHQLLFGTGLLKAEPTRRYRVWSRILQAVNALGYCRRD 180
Query: 65 LPEVKKKWSDLKTEVRRKVAQVRAAVEGGEAPGPTEEDGAGGPGTGGGSGGGGPAVAPVL 124
+ ++K KW DL+ VRRK+ +R A G P P G+G P +
Sbjct: 181 VVDLKHKWRDLRAVVRRKLGDLRKAAHG---PSP----GSGKP-------------QALA 220
Query: 125 LTPMQQRICN------LLGEATIISLPSTTEIHPVAL 155
LTP++Q + L E + P T++ P L
Sbjct: 221 LTPVEQVVAKTFSCQALPSEGFSLEPPRATQVDPCNL 257
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 62.4 bits (150), Expect = 5e-10
Identities = 58/231 (25%), Positives = 86/231 (37%), Gaps = 26/231 (11%)
Query: 8 RKMNFSEREVEIIVEELELKKHLLVNHFNAGVPLAAKSAAWHGILRRVNAVATCRRELPE 67
RK FS E +I++ E+ L + V +A + W GI ++N + + +R E
Sbjct: 16 RKPRFSFEENQILIREVRAHYPQLYGAQSRRVSVAERRRVWDGIAAKINGITSWKRTGQE 75
Query: 68 VKKKWSDLKTEVRRKVAQVRAAVEGGEAPGPTEEDGAG----------GPGT---GGGSG 114
V+K+W+D K + K+A+V + +G GP ED GPG G G+G
Sbjct: 76 VQKRWNDFKRRTKEKLARVPHSTQGA---GPAAEDAFSAEEETIFAILGPGVAAPGAGAG 132
Query: 115 GGGPAVAPVLLTPMQQRICN--LLGEATIISLPSTTEIHPVA--------LGPSATAAAA 164
P AP P +L E + T H A PS T
Sbjct: 133 AEEPPAAPSSQPPPPSACPQRYVLSEDRREDRRADTSAHSKAGSSSPEPWARPSCTPQEG 192
Query: 165 TVTLTQIPTETTYHTLEEGVVEYCTAEAPPPLPPETPVDMMAQHADTSVKP 215
+ L+ + PPP PP P +AQ A + P
Sbjct: 193 GCPRPKERESPPPSALQPVQLPRLALSPPPPAPPLPPPPPLAQVAPSPPSP 243
>gi|58761537 hypothetical protein LOC84437 [Homo sapiens]
Length = 345
Score = 42.7 bits (99), Expect = 4e-04
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 6 KKRKMNFSEREVEIIVEELELKKHLLVNHFNAGVPLAAKSAAWHGILRRVNAVATC-RRE 64
+KRK NFS +E + +++E+ +K ++ + K AW I + VNAV +R
Sbjct: 6 RKRKSNFSVQETQTLLKEITKRKEVIFSKQLNTTINVMKRMAWEEIAQCVNAVGEGEQRT 65
Query: 65 LPEVKKKWSDLKTEVRRKVAQVRAAVEGGEAPGPTEE 101
EVK+++ D + ++RK + + G P P+ +
Sbjct: 66 GTEVKRRYLDWRALMKRKRMKANIKLVGSGFPLPSSD 102
>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
Length = 920
Score = 42.0 bits (97), Expect = 7e-04
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 102 DGAGGPGTGGGSGGGGPAVAPVLLTPMQQRICNLLGEATIISLPSTTEIHPVALGPSATA 161
+G GG G GGG+GGGGP+ + LL L ++ LP +H V +AT+
Sbjct: 749 NGGGGGGGGGGAGGGGPSASNSLLYTGDLEALQRLQAGNVV-LPL---VHRVTGTLAATS 804
Query: 162 AAA-----TVTLTQIPTETTYHTLEE-----GVVEYCTAEAPP-PLPPETPVDMMAQH 208
AA T T+ P E T V + +P L P+TP++M+ H
Sbjct: 805 TAAQRVYTTGTIRYAPAEVTLAMQSNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHH 862
>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
Length = 901
Score = 42.0 bits (97), Expect = 7e-04
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 102 DGAGGPGTGGGSGGGGPAVAPVLLTPMQQRICNLLGEATIISLPSTTEIHPVALGPSATA 161
+G GG G GGG+GGGGP+ + LL L ++ LP +H V +AT+
Sbjct: 730 NGGGGGGGGGGAGGGGPSASNSLLYTGDLEALQRLQAGNVV-LPL---VHRVTGTLAATS 785
Query: 162 AAA-----TVTLTQIPTETTYHTLEE-----GVVEYCTAEAPP-PLPPETPVDMMAQH 208
AA T T+ P E T V + +P L P+TP++M+ H
Sbjct: 786 TAAQRVYTTGTIRYAPAEVTLAMQSNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHH 843
>gi|4885243 FOS-like antigen 1 [Homo sapiens]
Length = 271
Score = 40.8 bits (94), Expect = 0.002
Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 28/213 (13%)
Query: 103 GAGGPGTGGGSGGGGPAVAPVLLTPMQQRICNLLGEATIISLPSTTE--IHPVALGPSAT 160
G GP +G G G GGPA P QQ+ +L+ +S + + P LGPS+
Sbjct: 6 GEPGPSSGNGGGYGGPAQPPAAAQAAQQKF-HLVPSINTMSGSQELQWMVQPHFLGPSSY 64
Query: 161 AAAATVTLTQIPTETTYHTLEEGVVEYCTAEAPPPLPPETPVDMMAQHADTSVKPQALKS 220
T P GV+ A PPP P + ++ + + + +
Sbjct: 65 PRPLTYPQYSPPQP------RPGVIR---ALGPPPGVRRRPCEQISPEEEE--RRRVRRE 113
Query: 221 RIALNSAKLIQEQRVTNLHVKEIAQHLEQQNDLLQMIRRSQEVQACAQERQAQAMEGTQA 280
R L +AK + KE+ L+ + D L E + +R+ + ++ +
Sbjct: 114 RNKLAAAKCRNRR-------KELTDFLQAETDKL-------EDEKSGLQREIEELQKQKE 159
Query: 281 ALSVLIQVLRPMIKDFRRYLQSNTANPAPASDP 313
L ++++ RP+ K + +T + + S P
Sbjct: 160 RLELVLEAHRPICKIPEGAKEGDTGSTSGTSSP 192
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 38.9 bits (89), Expect = 0.006
Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 104 AGGPGTGGGSGGGGPAVAPVLLTPMQQRICNLLGEATIISLPSTTEIHPVALGP-SATAA 162
AGGPG G +G G PA PM Q L G + PS + P G +A AA
Sbjct: 101 AGGPGIGRAAGRGIPAG-----VPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAA 155
Query: 163 AATVTLTQIPTETTYHTLEEGVVEYCTAEAPPP 195
AAT ++ PT+ Y G APPP
Sbjct: 156 AATASIAGAPTQ--YPPGRGGPPPPMGRGAPPP 186
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 38.9 bits (89), Expect = 0.006
Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 104 AGGPGTGGGSGGGGPAVAPVLLTPMQQRICNLLGEATIISLPSTTEIHPVALGP-SATAA 162
AGGPG G +G G PA PM Q L G + PS + P G +A AA
Sbjct: 101 AGGPGIGRAAGRGIPAG-----VPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAA 155
Query: 163 AATVTLTQIPTETTYHTLEEGVVEYCTAEAPPP 195
AAT ++ PT+ Y G APPP
Sbjct: 156 AATASIAGAPTQ--YPPGRGGPPPPMGRGAPPP 186
>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
Length = 1729
Score = 38.5 bits (88), Expect = 0.008
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 22/193 (11%)
Query: 95 APGPTEEDGA----GGPGTGGGSGGGGPAVAPVLLTPMQQRICNLLGEATIISLPSTTEI 150
+P P+ E+G G P GSG G P + P P + C+ + P ++
Sbjct: 275 SPAPSSENGGPASPGLPAEASGSGPGSPHLHP----PDKSSPCH--SQLLEAQTPEASQA 328
Query: 151 HPV-ALGPSATAAAATVTLTQIPTETTYHTLEEGVVEYCTAEAPPPLPPETPVDMMAQHA 209
P A+ PSA +AA +P E + HT G+ EAP P P P +++ H
Sbjct: 329 SPCPAVTPSAPSAA-------LPDEGSRHTPSPGLPAEGAPEAPRPSSP--PPEVLEPH- 378
Query: 210 DTSVKPQALKSRIALNSAKLIQEQRVTNLHVKEIAQHLEQQNDLLQMIRRSQEVQACAQE 269
+ +P A R + +L+ R +E A+ + RR E +
Sbjct: 379 -SLDQPPATSPRPLIEVGELLDLTRTFPSGGEEEAKGDAHLRPTSLVQRRFSEGVLQSPS 437
Query: 270 RQAQAMEGTQAAL 282
+ + + G+ AAL
Sbjct: 438 QDQEKLGGSLAAL 450
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.7 bits (86), Expect = 0.014
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 104 AGGPGTGGGSGGGGPAVAPVLLTPMQQRICNLLGEATIISLPSTTEIHPVALGPSATAA- 162
AGGPG G +G G PA P+ P L G + PS + P G A AA
Sbjct: 101 AGGPGVGRAAGRGVPAGVPIPQAP-----AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAV 155
Query: 163 AATVTLTQIPTE 174
AAT ++ PT+
Sbjct: 156 AATASIAGAPTQ 167
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.7 bits (86), Expect = 0.014
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 104 AGGPGTGGGSGGGGPAVAPVLLTPMQQRICNLLGEATIISLPSTTEIHPVALGPSATAA- 162
AGGPG G +G G PA P+ P L G + PS + P G A AA
Sbjct: 101 AGGPGVGRAAGRGVPAGVPIPQAP-----AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAV 155
Query: 163 AATVTLTQIPTE 174
AAT ++ PT+
Sbjct: 156 AATASIAGAPTQ 167
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.7 bits (86), Expect = 0.014
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 104 AGGPGTGGGSGGGGPAVAPVLLTPMQQRICNLLGEATIISLPSTTEIHPVALGPSATAA- 162
AGGPG G +G G PA P+ P L G + PS + P G A AA
Sbjct: 101 AGGPGVGRAAGRGVPAGVPIPQAP-----AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAV 155
Query: 163 AATVTLTQIPTE 174
AAT ++ PT+
Sbjct: 156 AATASIAGAPTQ 167
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.7 bits (86), Expect = 0.014
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 104 AGGPGTGGGSGGGGPAVAPVLLTPMQQRICNLLGEATIISLPSTTEIHPVALGPSATAA- 162
AGGPG G +G G PA P+ P L G + PS + P G A AA
Sbjct: 101 AGGPGVGRAAGRGVPAGVPIPQAP-----AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAV 155
Query: 163 AATVTLTQIPTE 174
AAT ++ PT+
Sbjct: 156 AATASIAGAPTQ 167
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.7 bits (86), Expect = 0.014
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 104 AGGPGTGGGSGGGGPAVAPVLLTPMQQRICNLLGEATIISLPSTTEIHPVALGPSATAA- 162
AGGPG G +G G PA P+ P L G + PS + P G A AA
Sbjct: 101 AGGPGVGRAAGRGVPAGVPIPQAP-----AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAV 155
Query: 163 AATVTLTQIPTE 174
AAT ++ PT+
Sbjct: 156 AATASIAGAPTQ 167
>gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo
sapiens]
Length = 3258
Score = 37.4 bits (85), Expect = 0.018
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 92 GGEAPGPTEEDGAGGPGTGGGSGGGGP 118
GGE G + G GG G GGG GGGGP
Sbjct: 741 GGEEGGGGDGGGGGGDGGGGGGGGGGP 767
Score = 31.6 bits (70), Expect = 1.0
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 86 VRAAVEGGEAPGPTEEDGAGGPGTGGGSGGGG 117
V A +GG G + G GG GGG GGGG
Sbjct: 734 VSGAGDGGGEEGGGGDGGGGGGDGGGGGGGGG 765
Score = 28.5 bits (62), Expect = 8.5
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 89 AVEG-GEAPGPTEEDGAGGPGTGGGSGGGGPAVAP 122
AV G G+ G G GG G G G GGGG P
Sbjct: 733 AVSGAGDGGGEEGGGGDGGGGGGDGGGGGGGGGGP 767
>gi|19718780 semaphorin 6B precursor [Homo sapiens]
Length = 888
Score = 37.0 bits (84), Expect = 0.024
Identities = 53/182 (29%), Positives = 66/182 (36%), Gaps = 44/182 (24%)
Query: 80 RRKVAQVRAAVEGGEAPGPTEEDG---AGGPGTGGGSGGGGPAVAP-VLLTPMQQRICNL 135
RRK + A GEA G A GPG GG GGGG V P LL P+ Q N
Sbjct: 632 RRKDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQ---NG 688
Query: 136 LGEATIIS----------LPS------------TTEIHPVALGPSATAAAATVTLTQIPT 173
+AT++ LP+ T HP ALGP A + +P
Sbjct: 689 WAKATLLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPL----LPA 744
Query: 174 ETTYHTLEEGVVEYCTAEAPPPLPPETPVD--------MMAQHADTSVKPQALKSRIALN 225
+ L ++ A PP P E D A H D + P A R +
Sbjct: 745 SASSSLL---LLAPARAPEQPPAPGEPTPDGRLYAARPGRASHGDFPLTPHASPDRRRVV 801
Query: 226 SA 227
SA
Sbjct: 802 SA 803
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 36.6 bits (83), Expect = 0.031
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 89 AVEGGEAPGPTEEDGAGGPGTGGGSGGGGPAVAPVLLTPMQQRICNLLGEATIISLPSTT 148
A GG PG G GGPG GGG GGGG ++ + T + R G A+ +S P
Sbjct: 637 AAGGGGGPGG---GGGGGPGGGGGPGGGGGSLYSDVSTGLTWR----SGTASSVSYPKQM 689
Query: 149 EIHPV 153
+ V
Sbjct: 690 PLSQV 694
Score = 35.0 bits (79), Expect = 0.091
Identities = 20/34 (58%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 88 AAVEGGEAPGPTEEDGAGGPGTGGG---SGGGGP 118
AAV GG G T G GGPG GGG GGGGP
Sbjct: 627 AAVGGGA--GATAAGGGGGPGGGGGGGPGGGGGP 658
Score = 29.3 bits (64), Expect = 5.0
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 79 VRRKVAQVRAAVEGGEAPGPTEEDGAGGPGTGGGSGGGG 117
VR + A GG APG GAGG G G+ G G
Sbjct: 329 VRLVAGHEKVACSGG-APGAGGAGGAGGAAAGAGAAGAG 366
>gi|119220564 one cut domain, family member 2 [Homo sapiens]
Length = 504
Score = 36.6 bits (83), Expect = 0.031
Identities = 25/72 (34%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 93 GEAPGPTEEDGAGGPGTGGGSGGGGPAVAPVLLTPMQQRICNLLGEATIISLPSTTEIHP 152
G GP GG G GGG GGGGP LL ++ P H
Sbjct: 30 GTLHGPAGGGSGGGGGGGGGGGGGGPGHEQELLASPSPHHAGRGAAGSLRGPPPPPTAHQ 89
Query: 153 VALGPSATAAAA 164
LG +A AAAA
Sbjct: 90 -ELGTAAAAAAA 100
>gi|113419909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 36.2 bits (82), Expect = 0.041
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 63 RELPEVKKKWSDLKTEVRRKVAQVRAAVEGGEAPGPTEEDGAGGPGTGGGSGGGGPAVAP 122
RE+P+ K L VR + R AV P G GSG PA AP
Sbjct: 238 REVPQAASKTHGLLQAVRTQAQDKRPAVTSQPCPSAATHSLGLGSNLSFGSGAKRPAQAP 297
Query: 123 V---LLTPMQQRICNL-LGEATI----ISLPSTTEIHPVA--LGPSATAAAATVTLTQIP 172
+ L P + R+ + E+TI + P + P A LGPS + T Q+P
Sbjct: 298 IQACLNFPKKPRLGPFQIPESTIQGGELGAPENLQPPPAATELGPSRSPQMGRRTPAQVP 357
Query: 173 T 173
+
Sbjct: 358 S 358
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 36.2 bits (82), Expect = 0.041
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 89 AVEGGEAPGPTEEDGAG-GPGTGGGSGGGGPAVAP 122
++EGG GP GAG GPG G G G G P AP
Sbjct: 6 SLEGGAGDGPLPPGGAGPGPGPGPGPGAGKPPSAP 40
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 36.2 bits (82), Expect = 0.041
Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 13/143 (9%)
Query: 92 GGEAPGPTEEDGAGGPGTGGGSGGGGPAVAPVLLTPMQQRICNLLGEATIISLPSTTEIH 151
G A G GG G GG S GG + P + +Q++ + +++++S P ++
Sbjct: 1883 GSSAAGGALPWARGGSGGGGDSHHGGASYVPERTSSLQRQRLSDDSQSSLLSKPVSSLFQ 1942
Query: 152 ----------PVALGPSATAAAATVTLTQIPTETTYHTLEEGVVEYCTAEAPPPLPPETP 201
P G S TAAAA + + ++ T VE+ E PPL P
Sbjct: 1943 NWPKPPLPPLPTGTGVSPTAAAAPGATSPSASSSSTSTRHLQGVEF---EMRPPLLRRAP 1999
Query: 202 VDMMAQHADTSVKPQALKSRIAL 224
+ ++ V P S + +
Sbjct: 2000 SPSLLPASEHKVSPAPRPSSLPI 2022
Score = 32.0 bits (71), Expect = 0.77
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 94 EAPGPTEEDGAGGPGTGGGSGGGGPAVAPVLLTP 127
EA PT+ + GG G GG S PA++PV +P
Sbjct: 1178 EAEPPTQPEPTGGGGGGGSSPSPAPAMSPVPPSP 1211
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 36.2 bits (82), Expect = 0.041
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 36 NAGVPLAAKSAAWHGILRRVNAVATCRRELPEVKKKWSDLKTEVRRKVAQVR--AAVEGG 93
N V L A+S A ++ ++ EL +K + + +K+ + ++++ AA +
Sbjct: 161 NVPVKLFARSTAVTTSSAKIKLKSS---ELQAIKTELTQIKSNIDALLSRLEQIAAEQKA 217
Query: 94 EAPGPTEEDG--AGGPGTGGGSGGGG 117
G + DG AGG G GGGSGGGG
Sbjct: 218 NPDGKKKGDGGGAGGGGGGGGSGGGG 243
Score = 34.3 bits (77), Expect = 0.16
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 62 RRELPEVKKKWSDLKTEVRRKVAQVRAAVEG---GEAPGPTEEDGAGGPGTGGGSGGGG 117
+ EL ++K L + + + A+ +A +G G+ G G GG G GG GGGG
Sbjct: 191 KTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGG 249
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 36.2 bits (82), Expect = 0.041
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 36 NAGVPLAAKSAAWHGILRRVNAVATCRRELPEVKKKWSDLKTEVRRKVAQVR--AAVEGG 93
N V L A+S A ++ ++ EL +K + + +K+ + ++++ AA +
Sbjct: 145 NVPVKLFARSTAVTTSSAKIKLKSS---ELQAIKTELTQIKSNIDALLSRLEQIAAEQKA 201
Query: 94 EAPGPTEEDG--AGGPGTGGGSGGGG 117
G + DG AGG G GGGSGGGG
Sbjct: 202 NPDGKKKGDGGGAGGGGGGGGSGGGG 227
Score = 34.3 bits (77), Expect = 0.16
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 62 RRELPEVKKKWSDLKTEVRRKVAQVRAAVEG---GEAPGPTEEDGAGGPGTGGGSGGGG 117
+ EL ++K L + + + A+ +A +G G+ G G GG G GG GGGG
Sbjct: 175 KTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGG 233
>gi|205277396 dynactin 1 isoform 4 [Homo sapiens]
Length = 1139
Score = 35.8 bits (81), Expect = 0.053
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 154 ALGPSATAAAATVTLTQ--IPTETTYHT--LEEGVVEYCTAEAPPPLPPETPVDMMAQHA 209
+LGPS +A+A ++ ++ P +T + V+ A P P P + + AQ
Sbjct: 32 SLGPSGSASAGELSSSEPSTPAQTPLAAPIIPTPVLTSPGAVPPLPSPSKEEEGLRAQVR 91
Query: 210 DTSVKPQALKSRIALNSAKLIQEQRVTNLHVKEIAQHLEQQNDLLQMIRRSQEVQACAQE 269
D K + L+ + A + AKL KE+ +H Q + + + QE QA Q
Sbjct: 92 DLEEKLETLRLKRAEDKAKL-----------KELEKHKIQLEQVQEWKSKMQEQQADLQR 140
Query: 270 RQAQAMEGTQAALSVLIQVLRPM 292
R +A + + AL + + M
Sbjct: 141 RLKEARKEAKEALEAKERYMEEM 163
>gi|205277392 dynactin 1 isoform 3 [Homo sapiens]
Length = 1253
Score = 35.8 bits (81), Expect = 0.053
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 154 ALGPSATAAAATVTLTQ--IPTETTYHT--LEEGVVEYCTAEAPPPLPPETPVDMMAQHA 209
+LGPS +A+A ++ ++ P +T + V+ A P P P + + AQ
Sbjct: 146 SLGPSGSASAGELSSSEPSTPAQTPLAAPIIPTPVLTSPGAVPPLPSPSKEEEGLRAQVR 205
Query: 210 DTSVKPQALKSRIALNSAKLIQEQRVTNLHVKEIAQHLEQQNDLLQMIRRSQEVQACAQE 269
D K + L+ + A + AKL KE+ +H Q + + + QE QA Q
Sbjct: 206 DLEEKLETLRLKRAEDKAKL-----------KELEKHKIQLEQVQEWKSKMQEQQADLQR 254
Query: 270 RQAQAMEGTQAALSVLIQVLRPM 292
R +A + + AL + + M
Sbjct: 255 RLKEARKEAKEALEAKERYMEEM 277
>gi|13259508 dynactin 1 isoform 2 [Homo sapiens]
Length = 1144
Score = 35.8 bits (81), Expect = 0.053
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 154 ALGPSATAAAATVTLTQ--IPTETTYHT--LEEGVVEYCTAEAPPPLPPETPVDMMAQHA 209
+LGPS +A+A ++ ++ P +T + V+ A P P P + + AQ
Sbjct: 32 SLGPSGSASAGELSSSEPSTPAQTPLAAPIIPTPVLTSPGAVPPLPSPSKEEEGLRAQVR 91
Query: 210 DTSVKPQALKSRIALNSAKLIQEQRVTNLHVKEIAQHLEQQNDLLQMIRRSQEVQACAQE 269
D K + L+ + A + AKL KE+ +H Q + + + QE QA Q
Sbjct: 92 DLEEKLETLRLKRAEDKAKL-----------KELEKHKIQLEQVQEWKSKMQEQQADLQR 140
Query: 270 RQAQAMEGTQAALSVLIQVLRPM 292
R +A + + AL + + M
Sbjct: 141 RLKEARKEAKEALEAKERYMEEM 163
>gi|13259510 dynactin 1 isoform 1 [Homo sapiens]
Length = 1278
Score = 35.8 bits (81), Expect = 0.053
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 154 ALGPSATAAAATVTLTQ--IPTETTYHT--LEEGVVEYCTAEAPPPLPPETPVDMMAQHA 209
+LGPS +A+A ++ ++ P +T + V+ A P P P + + AQ
Sbjct: 166 SLGPSGSASAGELSSSEPSTPAQTPLAAPIIPTPVLTSPGAVPPLPSPSKEEEGLRAQVR 225
Query: 210 DTSVKPQALKSRIALNSAKLIQEQRVTNLHVKEIAQHLEQQNDLLQMIRRSQEVQACAQE 269
D K + L+ + A + AKL KE+ +H Q + + + QE QA Q
Sbjct: 226 DLEEKLETLRLKRAEDKAKL-----------KELEKHKIQLEQVQEWKSKMQEQQADLQR 274
Query: 270 RQAQAMEGTQAALSVLIQVLRPM 292
R +A + + AL + + M
Sbjct: 275 RLKEARKEAKEALEAKERYMEEM 297
>gi|98986457 host cell factor 1 [Homo sapiens]
Length = 2035
Score = 35.8 bits (81), Expect = 0.053
Identities = 55/260 (21%), Positives = 96/260 (36%), Gaps = 29/260 (11%)
Query: 62 RRELPEVKKKWSDLKTEVRRKVAQVRAAVEGGEAPGPTEEDGAGGPGTGGGSGGGGPAVA 121
R++LP ++ T + + A+V +A + E P + G P +G S G VA
Sbjct: 1511 RQQLPP-RQLLQSASTALMGESAEVLSASQTPELPAAVDLSSTGEPSSGQESAGSA-VVA 1568
Query: 122 PVLLTPMQQRICNLLGEATIISLPSTTEIHPVALGPSATAAAATVTLTQIPTETTYHTLE 181
V++ P P+ +E+ ++L A A T T + T T
Sbjct: 1569 TVVVQPPP---------------PTQSEVDQLSLPQELMAEAQAGTTTLMVTGLT----P 1609
Query: 182 EGVVEYCTAEAPPPLPPETPVDMMAQHADTSVKPQAL----KSRIALNSAKLIQEQRVTN 237
E + AEA +A A QA+ + +A + + + +
Sbjct: 1610 EELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAVMGTGEPMDTSEAAATVTQAELGH 1669
Query: 238 LHVKEIAQHLEQQNDLLQMIRRSQEVQACAQERQAQAMEGTQAALSVLIQVLRPMIKDFR 297
L A+ E Q + ++ QE+ A Q++Q Q + Q + + L P
Sbjct: 1670 LS----AEGQEGQATTIPIVLTQQELAALVQQQQLQEAQAQQQHHHLPTEALAPADSLND 1725
Query: 298 RYLQSNTANPAPASDPGQVA 317
++SN N + P VA
Sbjct: 1726 PAIESNCLNELAGTVPSTVA 1745
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 35.8 bits (81), Expect = 0.053
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 72 WSDLKTEVRRKVAQVRAAVEGGEAPGPTEEDGAGGPGTGGGSGGGGPAVAPVLLTPMQQR 131
WS ++E R++ + GG A G +D GG G GGG GGG + +P
Sbjct: 112 WSFPRSE--REICMYSSFNTGGGAAGGPGDDSGGGGGAGGGGGGGSSS------SPAATS 163
Query: 132 ICNLLGEATIISLPSTTEIHPVALGPSATAAAAT--VTLTQIPTETTYHTLEEGVVE 186
A + + A PS AA A T++P LE G V+
Sbjct: 164 AAATSAAAAAAAAAAAAAAAAGAGAPSVGAAGAADGGDETRLPFRRGIALLESGCVD 220
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,110,750
Number of Sequences: 37866
Number of extensions: 746665
Number of successful extensions: 9971
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 281
Number of HSP's that attempted gapping in prelim test: 7016
Number of HSP's gapped (non-prelim): 2295
length of query: 327
length of database: 18,247,518
effective HSP length: 103
effective length of query: 224
effective length of database: 14,347,320
effective search space: 3213799680
effective search space used: 3213799680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.