Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 34577120
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34577120 mitochondrial translational release factor 1 [Homo
sapiens]
(445 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34577120 mitochondrial translational release factor 1 [Homo s... 904 0.0
gi|166795303 mitochondrial translational release factor 1-like i... 323 3e-88
gi|166795305 mitochondrial translational release factor 1-like i... 210 2e-54
gi|219879802 hypothetical protein LOC91574 [Homo sapiens] 56 8e-08
gi|22748627 hypothetical protein LOC91574 [Homo sapiens] 56 8e-08
gi|47519616 tropomyosin 2 (beta) isoform 2 [Homo sapiens] 44 4e-04
gi|42476296 tropomyosin 2 (beta) isoform 1 [Homo sapiens] 43 7e-04
gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens] 43 7e-04
gi|114155140 tropomyosin 3 isoform 1 [Homo sapiens] 42 0.001
gi|223555975 tropomyosin 4 isoform 1 [Homo sapiens] 41 0.002
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 40 0.003
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 40 0.003
gi|110815815 centlein isoform 1 [Homo sapiens] 40 0.004
gi|63252900 tropomyosin 1 alpha chain isoform 4 [Homo sapiens] 39 0.007
gi|63252898 tropomyosin 1 alpha chain isoform 1 [Homo sapiens] 39 0.007
gi|63252896 tropomyosin 1 alpha chain isoform 3 [Homo sapiens] 39 0.007
gi|27597085 tropomyosin 1 alpha chain isoform 5 [Homo sapiens] 39 0.007
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr... 39 0.007
gi|59850762 uveal autoantigen with coiled-coil domains and ankyr... 39 0.007
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo... 39 0.007
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 39 0.010
gi|114155146 tropomyosin 3 isoform 3 [Homo sapiens] 39 0.012
gi|24119203 tropomyosin 3 isoform 2 [Homo sapiens] 39 0.012
gi|50658069 phosphodiesterase 4D interacting protein isoform 2 [... 38 0.021
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ... 38 0.021
gi|50658077 phosphodiesterase 4D interacting protein isoform 4 [... 38 0.021
gi|50658075 phosphodiesterase 4D interacting protein isoform 3 [... 37 0.036
gi|56961680 coiled-coil domain containing 147 [Homo sapiens] 37 0.036
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 36 0.062
gi|221139761 zinc finger protein 853 [Homo sapiens] 36 0.081
>gi|34577120 mitochondrial translational release factor 1 [Homo
sapiens]
Length = 445
Score = 904 bits (2335), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MNRHLCVWLFRHPSLNGYLQCHIQLHSHQFRQIHLDTRLQVFRQNRNCILHLLSKNWSRR 60
MNRHLCVWLFRHPSLNGYLQCHIQLHSHQFRQIHLDTRLQVFRQNRNCILHLLSKNWSRR
Sbjct: 1 MNRHLCVWLFRHPSLNGYLQCHIQLHSHQFRQIHLDTRLQVFRQNRNCILHLLSKNWSRR 60
Query: 61 YCHQDTKMLWKHKALQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIY 120
YCHQDTKMLWKHKALQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIY
Sbjct: 61 YCHQDTKMLWKHKALQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIY 120
Query: 121 QEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKY 180
QEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKY
Sbjct: 121 QEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKY 180
Query: 181 DKNDVILEVTAGRTTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAA 240
DKNDVILEVTAGRTTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAA
Sbjct: 181 DKNDVILEVTAGRTTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAA 240
Query: 241 RISGDGVYKHLKYEGGIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDL 300
RISGDGVYKHLKYEGGIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDL
Sbjct: 241 RISGDGVYKHLKYEGGIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDL 300
Query: 301 RIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQI 360
RIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQI
Sbjct: 301 RIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQI 360
Query: 361 IEKDKRQQQSARKLQVGTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGKGLDQL 420
IEKDKRQQQSARKLQVGTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGKGLDQL
Sbjct: 361 IEKDKRQQQSARKLQVGTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGKGLDQL 420
Query: 421 IQRLLQSADEEAIAELLDEHLKSAK 445
IQRLLQSADEEAIAELLDEHLKSAK
Sbjct: 421 IQRLLQSADEEAIAELLDEHLKSAK 445
>gi|166795303 mitochondrial translational release factor 1-like
isoform a [Homo sapiens]
Length = 380
Score = 323 bits (827), Expect = 3e-88
Identities = 159/324 (49%), Positives = 229/324 (70%), Gaps = 9/324 (2%)
Query: 116 LAAIYQEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLV 175
L A+ + + E E+ + E E + N+ L++LA E ++I L +++ LV
Sbjct: 64 LLAVIKLLNEKERELRETEHLLHDENED----LRKLAENEITLCQKEITQLKHQIILLLV 119
Query: 176 PKEKYDKNDVILEVTAGRTTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGL 235
P E+ D+ND+ILEVTAG GG FT EIFDMYQ Y+ +K W FE L Y P++ GGL
Sbjct: 120 PSEETDENDLILEVTAG--VGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGL 177
Query: 236 HHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKL 295
HA+A I G Y+H+K+EGG+HRVQR+P+ + + R+HT TM+V +LPQP E+++ +
Sbjct: 178 RHASASIGGSEAYRHMKFEGGVHRVQRVPK---TEKQGRVHTSTMTVAILPQPTEINLVI 234
Query: 296 DPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRAR 355
+PKDLRIDT RA GAGGQHVN TDSAVR+VH+PTG+V ECQQERSQ+KNKE+A LRA+
Sbjct: 235 NPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAK 294
Query: 356 LYQQIIEKDKRQQQSARKLQVGTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGK 415
LY +E++ ++Q+ARK+Q+G++ +SE+IRTYNF Q+RV+DHRI + D++ F+ G
Sbjct: 295 LYSMHLEEEINKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDLETFMQGDY 354
Query: 416 GLDQLIQRLLQSADEEAIAELLDE 439
LD+L+Q L + AD E++ E++ +
Sbjct: 355 LLDELVQSLKEYADYESLVEIISQ 378
>gi|166795305 mitochondrial translational release factor 1-like
isoform b [Homo sapiens]
Length = 271
Score = 210 bits (535), Expect = 2e-54
Identities = 105/214 (49%), Positives = 145/214 (67%), Gaps = 9/214 (4%)
Query: 116 LAAIYQEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLV 175
L A+ + + E E+ + E E + N+ L++LA E ++I L +++ LV
Sbjct: 64 LLAVIKLLNEKERELRETEHLLHDENED----LRKLAENEITLCQKEITQLKHQIILLLV 119
Query: 176 PKEKYDKNDVILEVTAGRTTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGL 235
P E+ D+ND+ILEVTAG GG FT EIFDMYQ Y+ +K W FE L Y P++ GGL
Sbjct: 120 PSEETDENDLILEVTAG--VGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGL 177
Query: 236 HHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKL 295
HA+A I G Y+H+K+EGG+HRVQR+P+ + + R+HT TM+V +LPQP E+++ +
Sbjct: 178 RHASASIGGSEAYRHMKFEGGVHRVQRVPK---TEKQGRVHTSTMTVAILPQPTEINLVI 234
Query: 296 DPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPT 329
+PKDLRIDT RA GAGGQHVN TDSAVR+VH+PT
Sbjct: 235 NPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPT 268
>gi|219879802 hypothetical protein LOC91574 [Homo sapiens]
Length = 166
Score = 55.8 bits (133), Expect = 8e-08
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 293 VKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVL 352
+ LD +L + G GGQ NKT + V L HIP+G+VV+C Q RS +N+++A ++L
Sbjct: 53 LSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKIL 112
Query: 353 RARL------YQQIIEKDKRQQQSARKLQVGTRAQSERI 385
+ ++ + K+KR ++A+K Q + E +
Sbjct: 113 QEKVDVFYNGENSPVHKEKR--EAAKKKQERKKRAKETL 149
>gi|22748627 hypothetical protein LOC91574 [Homo sapiens]
Length = 166
Score = 55.8 bits (133), Expect = 8e-08
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 293 VKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVL 352
+ LD +L + G GGQ NKT + V L HIP+G+VV+C Q RS +N+++A ++L
Sbjct: 53 LSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKIL 112
Query: 353 RARL------YQQIIEKDKRQQQSARKLQVGTRAQSERI 385
+ ++ + K+KR ++A+K Q + E +
Sbjct: 113 QEKVDVFYNGENSPVHKEKR--EAAKKKQERKKRAKETL 149
>gi|47519616 tropomyosin 2 (beta) isoform 2 [Homo sapiens]
Length = 284
Score = 43.5 bits (101), Expect = 4e-04
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 75 LQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRR----HAEL----APLAAIYQEIQET 126
++KY E++ + + LEQ + E + SLNRR EL LA Q+++E
Sbjct: 57 VEKYSESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEA 116
Query: 127 EQAIEELESMCKSLN----KQDEK-QLQELALEERQTIDQKINMLYNELFQSLVPKE-KY 180
E+A +E E K + K +EK +LQE+ L+E + I + + Y E+ + LV E +
Sbjct: 117 EKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGEL 176
Query: 181 DKNDVILEVTAGR 193
++++ EV R
Sbjct: 177 ERSEERAEVAESR 189
>gi|42476296 tropomyosin 2 (beta) isoform 1 [Homo sapiens]
Length = 284
Score = 42.7 bits (99), Expect = 7e-04
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 75 LQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRR----HAEL----APLAAIYQEIQET 126
++KY E++ + + LEQ + E + SLNRR EL LA Q+++E
Sbjct: 57 VEKYSESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEA 116
Query: 127 EQAIEELESMCKSLN----KQDEK-QLQELALEERQTIDQKINMLYNELFQSLV 175
E+A +E E K + K +EK +LQE+ L+E + I + + Y E+ + LV
Sbjct: 117 EKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLV 170
>gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens]
Length = 840
Score = 42.7 bits (99), Expect = 7e-04
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 59 RRYCHQDTKMLWKHKAL----QKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELA 114
R Y + TK K L K E L++ Q L+Q + E +RRSL R +
Sbjct: 91 RGYSQESTKKKLSQKKLVHENPKANEQLNRRSQRLQQ------LTEVSRRSLRSREIQ-G 143
Query: 115 PLAAIYQEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSL 174
+ A+ Q + T++ E+ S NK +K ++ LE + + N++ NE+ S
Sbjct: 144 QVQAVKQSLPPTKK--EQCSSTQSKSNKTSQKHVKRKVLEVKSDSKEDENLVINEVINSP 201
Query: 175 VPKEKYDKNDVILEVTAGRTTGGDICQQFT 204
K++ ++ ++ T G + C Q T
Sbjct: 202 KGKKRKVEHQTACACSSQCTQGSEKCPQKT 231
>gi|114155140 tropomyosin 3 isoform 1 [Homo sapiens]
Length = 285
Score = 41.6 bits (96), Expect = 0.001
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 13/135 (9%)
Query: 54 SKNWSRRYCHQDTKMLWKHKALQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRR---- 109
SK K+ L KY E L + LE + E SLNRR
Sbjct: 37 SKQLEDELAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLV 96
Query: 110 HAEL----APLAAIYQEIQETEQAIEELESMCK-----SLNKQDEKQLQELALEERQTID 160
EL LA Q+++E E+A +E E K +L +++ +LQE+ L+E + I
Sbjct: 97 EEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIA 156
Query: 161 QKINMLYNELFQSLV 175
++ + Y E+ + LV
Sbjct: 157 EEADRKYEEVARKLV 171
>gi|223555975 tropomyosin 4 isoform 1 [Homo sapiens]
Length = 284
Score = 41.2 bits (95), Expect = 0.002
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 63 HQDTKMLWKHKALQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRR----HAEL----A 114
H K+ L KY E+L + LE + E + +LNRR EL
Sbjct: 45 HLQKKLKGTEDELDKYSEDLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQE 104
Query: 115 PLAAIYQEIQETEQAIEELESMCKSLN----KQDEK-QLQELALEERQTIDQKINMLYNE 169
LA Q+++E E+A +E E K + K +EK ++QE+ L+E + I ++ + Y E
Sbjct: 105 RLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEE 164
Query: 170 LFQSLV 175
+ + LV
Sbjct: 165 VARKLV 170
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 40.4 bits (93), Expect = 0.003
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 14/155 (9%)
Query: 81 NLSKEYQTL--------EQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEI----QETEQ 128
NL KE +TL E C++ + +EN+ + R ++ L + +++ +T+Q
Sbjct: 861 NLEKENKTLSKEIGIYKESCVRLKELEKENKELVKRATIDIKTLVTLREDLVSEKLKTQQ 920
Query: 129 AIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDVILE 188
+LE + L K + + L +E+ T D + +L ++L +S + K K + I
Sbjct: 921 MNNDLEKLTHELEKIGLNK-ERLLHDEQSTDDSRYKLLESKL-ESTLKKSLEIKEEKIAA 978
Query: 189 VTAGRTTGGDICQQFTREIFDMYQNYSCYKHWQFE 223
+ A + QQ +E+ + +NY K Q E
Sbjct: 979 LEARLEESTNYNQQLRQELKTVKKNYEALKQRQDE 1013
Score = 37.4 bits (85), Expect = 0.028
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 71 KHKALQKYMENLSKEYQTLEQCLQHIPV-NEENRRSLNRRHAELAPLAAIYQEIQETEQA 129
+++ LQK +EN +K+ Q LE LQ + + N+ +++L L + +E + EQ
Sbjct: 764 ENQRLQKTLENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQE 823
Query: 130 IEELESMCKSLNKQDEKQLQELALEE 155
+LE K L K++++ Q+ +++
Sbjct: 824 TSQLEKDKKQLEKENKRLRQQAEIKD 849
Score = 32.7 bits (73), Expect = 0.68
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 17/162 (10%)
Query: 38 RLQVFRQNRNCILHLLSKNWSRRYCHQDT--KMLWKHKALQKYMENLSKEYQTLEQCLQH 95
RLQ +N N + L T K L + K K +E L KE ++LEQ
Sbjct: 767 RLQKTLENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQ 826
Query: 96 IPVNEENRRSLNRRHAELAPLAAIYQ-EIQETEQAIEELESMCKSLNKQ----------- 143
+ E++++ L + + L A I ++E I LE K+L+K+
Sbjct: 827 L---EKDKKQLEKENKRLRQQAEIKDTTLEENNVKIGNLEKENKTLSKEIGIYKESCVRL 883
Query: 144 DEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDV 185
E + + L +R TID K + E S K + ND+
Sbjct: 884 KELEKENKELVKRATIDIKTLVTLREDLVSEKLKTQQMNNDL 925
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 40.4 bits (93), Expect = 0.003
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 81 NLSKEYQTL--------EQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEI----QETEQ 128
NL KE +TL E C++ + +EN+ + R ++ L + +++ +T+Q
Sbjct: 861 NLEKENKTLSKEIGIYKESCVRLKELEKENKELVKRATIDIKTLVTLREDLVSEKLKTQQ 920
Query: 129 AIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDVILE 188
+LE + L K +E L + Q+ D + +L ++L +S + K K + I
Sbjct: 921 MNNDLEKLTHELEKIGLN--KERLLHDEQSTDDRYKLLESKL-ESTLKKSLEIKEEKIAA 977
Query: 189 VTAGRTTGGDICQQFTREIFDMYQNYSCYKHWQFE 223
+ A + QQ +E+ + +NY K Q E
Sbjct: 978 LEARLEESTNYNQQLRQELKTVKKNYEALKQRQDE 1012
Score = 37.4 bits (85), Expect = 0.028
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 71 KHKALQKYMENLSKEYQTLEQCLQHIPV-NEENRRSLNRRHAELAPLAAIYQEIQETEQA 129
+++ LQK +EN +K+ Q LE LQ + + N+ +++L L + +E + EQ
Sbjct: 764 ENQRLQKTLENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQE 823
Query: 130 IEELESMCKSLNKQDEKQLQELALEE 155
+LE K L K++++ Q+ +++
Sbjct: 824 TSQLEKDKKQLEKENKRLRQQAEIKD 849
Score = 32.7 bits (73), Expect = 0.68
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 17/162 (10%)
Query: 38 RLQVFRQNRNCILHLLSKNWSRRYCHQDT--KMLWKHKALQKYMENLSKEYQTLEQCLQH 95
RLQ +N N + L T K L + K K +E L KE ++LEQ
Sbjct: 767 RLQKTLENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQ 826
Query: 96 IPVNEENRRSLNRRHAELAPLAAIYQ-EIQETEQAIEELESMCKSLNKQ----------- 143
+ E++++ L + + L A I ++E I LE K+L+K+
Sbjct: 827 L---EKDKKQLEKENKRLRQQAEIKDTTLEENNVKIGNLEKENKTLSKEIGIYKESCVRL 883
Query: 144 DEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDV 185
E + + L +R TID K + E S K + ND+
Sbjct: 884 KELEKENKELVKRATIDIKTLVTLREDLVSEKLKTQQMNNDL 925
>gi|110815815 centlein isoform 1 [Homo sapiens]
Length = 1406
Score = 40.0 bits (92), Expect = 0.004
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 59 RRYCHQDTKMLWK-----HKALQKYMENLSKEYQTL-EQCLQHIPVNEENRRSLNRRHAE 112
+R+ +D K K +K+ + ++NL K+ +TL E+C + ++ LN E
Sbjct: 1146 KRHLIEDLKFRQKVNLESNKSFSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKE 1205
Query: 113 LAPLAAIYQEIQETEQA-----------IEELESMCKSLNKQDEKQLQELALEERQTID- 160
+ +YQ+ +E + I E ES + KQLQELAL+ Q ++
Sbjct: 1206 KSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMAEIETAASKQLQELALQSEQVLEG 1265
Query: 161 -QKINMLYNE 169
QK +L NE
Sbjct: 1266 AQKTLLLANE 1275
>gi|63252900 tropomyosin 1 alpha chain isoform 4 [Homo sapiens]
Length = 284
Score = 39.3 bits (90), Expect = 0.007
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 75 LQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRR----HAEL----APLAAIYQEIQET 126
L KY E L + LE + E + SLNRR EL LA Q+++E
Sbjct: 57 LDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEA 116
Query: 127 EQAIEELESMCKSLNKQDEK-----QLQELALEERQTIDQKINMLYNELFQSLV 175
E+A +E E K + + +K ++QE+ L+E + I + + Y E+ + LV
Sbjct: 117 EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLV 170
>gi|63252898 tropomyosin 1 alpha chain isoform 1 [Homo sapiens]
Length = 284
Score = 39.3 bits (90), Expect = 0.007
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 75 LQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRR----HAEL----APLAAIYQEIQET 126
L KY E L + LE + E + SLNRR EL LA Q+++E
Sbjct: 57 LDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEA 116
Query: 127 EQAIEELESMCKSLNKQDEK-----QLQELALEERQTIDQKINMLYNELFQSLV 175
E+A +E E K + + +K ++QE+ L+E + I + + Y E+ + LV
Sbjct: 117 EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLV 170
>gi|63252896 tropomyosin 1 alpha chain isoform 3 [Homo sapiens]
Length = 284
Score = 39.3 bits (90), Expect = 0.007
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 75 LQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRR----HAEL----APLAAIYQEIQET 126
L KY E L + LE + E + SLNRR EL LA Q+++E
Sbjct: 57 LDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEA 116
Query: 127 EQAIEELESMCKSLNKQDEK-----QLQELALEERQTIDQKINMLYNELFQSLV 175
E+A +E E K + + +K ++QE+ L+E + I + + Y E+ + LV
Sbjct: 117 EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLV 170
>gi|27597085 tropomyosin 1 alpha chain isoform 5 [Homo sapiens]
Length = 284
Score = 39.3 bits (90), Expect = 0.007
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 75 LQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRR----HAEL----APLAAIYQEIQET 126
L KY E L + LE + E + SLNRR EL LA Q+++E
Sbjct: 57 LDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEA 116
Query: 127 EQAIEELESMCKSLNKQDEK-----QLQELALEERQTIDQKINMLYNELFQSLV 175
E+A +E E K + + +K ++QE+ L+E + I + + Y E+ + LV
Sbjct: 117 EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLV 170
>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 2 [Homo sapiens]
Length = 1403
Score = 39.3 bits (90), Expect = 0.007
Identities = 29/130 (22%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 73 KALQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEE 132
+AL + + L+K+ + L Q ++ V + + + + + A+ +Q+ +E+
Sbjct: 1046 RALSRKTDELNKQLKDLSQ--KYTEVKNVKEKLVEENAKQTSEILAVQNLLQKQHVPLEQ 1103
Query: 133 LESMCKSLN------KQDEKQLQELALEERQTIDQKINMLYNE------LFQSLVPKEKY 180
+E++ KSLN K++ K +Q +E+QT+ + +L N+ L + L KE +
Sbjct: 1104 VEALKKSLNGTIENLKEELKSMQRCYEKEQQTVTKLHQLLENQKNSSVPLAEHLQIKEAF 1163
Query: 181 DKNDVILEVT 190
+K I++ +
Sbjct: 1164 EKEVGIIKAS 1173
Score = 28.9 bits (63), Expect = 9.9
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 21/107 (19%)
Query: 71 KHKALQKYMENLSK---EYQTLEQCLQHIPVNE------------ENRRSLNRRHAELAP 115
K + Q ME +SK E Q +Q L+ + E + ++ + +LA
Sbjct: 1177 KEEESQNKMEEVSKLQSEVQNTKQALKKLETREVVDLSKYKATKSDLETQISSLNEKLAN 1236
Query: 116 LAAIYQEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQK 162
L Y+E+ E E L + K ++ +DEK+L ++E+ + DQK
Sbjct: 1237 LNRKYEEVCE-----EVLHAKKKEISAKDEKELLHFSIEQ-EIKDQK 1277
>gi|59850762 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 1 [Homo sapiens]
Length = 1416
Score = 39.3 bits (90), Expect = 0.007
Identities = 29/130 (22%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 73 KALQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEE 132
+AL + + L+K+ + L Q ++ V + + + + + A+ +Q+ +E+
Sbjct: 1059 RALSRKTDELNKQLKDLSQ--KYTEVKNVKEKLVEENAKQTSEILAVQNLLQKQHVPLEQ 1116
Query: 133 LESMCKSLN------KQDEKQLQELALEERQTIDQKINMLYNE------LFQSLVPKEKY 180
+E++ KSLN K++ K +Q +E+QT+ + +L N+ L + L KE +
Sbjct: 1117 VEALKKSLNGTIENLKEELKSMQRCYEKEQQTVTKLHQLLENQKNSSVPLAEHLQIKEAF 1176
Query: 181 DKNDVILEVT 190
+K I++ +
Sbjct: 1177 EKEVGIIKAS 1186
Score = 28.9 bits (63), Expect = 9.9
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 21/107 (19%)
Query: 71 KHKALQKYMENLSK---EYQTLEQCLQHIPVNE------------ENRRSLNRRHAELAP 115
K + Q ME +SK E Q +Q L+ + E + ++ + +LA
Sbjct: 1190 KEEESQNKMEEVSKLQSEVQNTKQALKKLETREVVDLSKYKATKSDLETQISSLNEKLAN 1249
Query: 116 LAAIYQEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQK 162
L Y+E+ E E L + K ++ +DEK+L ++E+ + DQK
Sbjct: 1250 LNRKYEEVCE-----EVLHAKKKEISAKDEKELLHFSIEQ-EIKDQK 1290
>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
sapiens]
Length = 1939
Score = 39.3 bits (90), Expect = 0.007
Identities = 80/416 (19%), Positives = 160/416 (38%), Gaps = 51/416 (12%)
Query: 35 LDTRLQVFRQNRNCILHLLSKNWSRRYCHQDTKMLWKHKALQKYMENLSKEYQTLEQCLQ 94
++ R +F N + K+W + K L K +K M N+ +E+ E+ +
Sbjct: 809 VERRESIFCIQYNVRAFMNVKHWPWMKLYFKIKPLLKSAETEKEMANMKEEF---EKTKE 865
Query: 95 HIPVNEENRRSLNRRHAELAPLAAIYQ-EIQETEQAIEELESMCKSLNKQDEKQLQELAL 153
+ E R+ L + L Q ++Q ++ + E C L K K E +
Sbjct: 866 ELAKTEAKRKELEEKMVTLMQEKNDLQLQVQAEADSLADAEERCDQLIKT--KIQLEAKI 923
Query: 154 EERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGRTTGGDICQQFTREIFDM--- 210
+E V + D+ ++ E+TA + D C + ++I D+
Sbjct: 924 KE-------------------VTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELT 964
Query: 211 YQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSS 270
KH + + GL A+++ K + + + L +
Sbjct: 965 LAKVEKEKHATENKVKNLTEEMAGLDETIAKLT--------KEKKALQEAHQQTLDDLQA 1016
Query: 271 RMQRIHTGTMSVIVLPQP-DEVDVKLD-PKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIP 328
+++T T + I L Q D+++ L+ K +R+D RAK K + ++L
Sbjct: 1017 EEDKVNTLTKAKIKLEQQVDDLEGSLEQEKKIRMDLERAK-------RKLEGDLKLAQES 1069
Query: 329 T-GLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDKRQQQSARKLQVGTRAQSERIRT 387
T + + QQ ++K KE L++++ + + Q+ ++LQ E I
Sbjct: 1070 TMDIENDKQQLDEKLKKKEFEMSGLQSKIEDE-QALGMQLQKKIKELQARIEELEEEIEA 1128
Query: 388 YNFTQDRVSDHR--IAYEVRDIKEFL--CGGKGLDQLIQRLLQSADEEAIAELLDE 439
++ + R ++ E+ +I E L GG Q+ + A+ + + L+E
Sbjct: 1129 ERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEE 1184
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 38.9 bits (89), Expect = 0.010
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 64 QDTKMLWKHKALQKYMENLSKEYQTLE---QCLQHI--PVNEENRRSLNRRHAELAPLAA 118
+ T+ KHK LQK E L + Y+ + + +QH+ V +E + + + A
Sbjct: 1600 ESTEWQEKHKELQKEYEILLQSYENVSNEAERIQHVVEAVRQEKQELYGKLRSTEANKKE 1659
Query: 119 IYQEIQETEQAIEELESMCKSLNKQDEKQLQELALE 154
+++QE EQ +EE++ + K ++++ EL E
Sbjct: 1660 TEKQLQEAEQEMEEMKEKMRKFAKSKQQKILELEEE 1695
Score = 36.2 bits (82), Expect = 0.062
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 23/142 (16%)
Query: 75 LQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRH-AELAPLAAIYQEIQETEQAIEEL 133
LQ+ M +L ++++ Q + E +L ++H AE+ + +Q+T Q EL
Sbjct: 338 LQEEMHHLLEQFEQAGQAQAEL---ESRYSALEQKHKAEMEEKTSHILSLQKTGQ---EL 391
Query: 134 ESMCKSLNKQDEKQLQ---ELALEERQTIDQKINMLYNE-----LFQSLVPKEKYDKNDV 185
+S C +L Q+ K LQ E A++ QTI Q + L + F + +P ++++
Sbjct: 392 QSACDALKDQNSKLLQDKNEQAVQSAQTIQQLEDQLQQKSKEISQFLNRLPLQQHE---- 447
Query: 186 ILEVTAGRTTGGDICQQFTREI 207
TA +T+ D+ + T+ +
Sbjct: 448 ----TASQTSFPDVYNEGTQAV 465
Score = 31.2 bits (69), Expect = 2.0
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 61 YCHQDTKMLWKHKALQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIY 120
YC T K++ L+ M+NL K C+ + EE ++ L + ++
Sbjct: 1940 YCQDVTDAQIKNELLESEMKNLKK-------CVSEL---EEEKQQLVKEKTKV------- 1982
Query: 121 QEIQETEQAIEELESMCKSL-NKQDEKQLQELALEERQTIDQ 161
E + ++ +E+++ K NK K+LQEL E++Q + Q
Sbjct: 1983 -ESEIRKEYLEKIQGAQKEPGNKSHAKELQELLKEKQQEVKQ 2023
>gi|114155146 tropomyosin 3 isoform 3 [Homo sapiens]
Length = 247
Score = 38.5 bits (88), Expect = 0.012
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 116 LAAIYQEIQETEQAIEELESMCK-----SLNKQDEKQLQELALEERQTIDQKINMLYNEL 170
LA Q+++E E+A +E E K +L +++ +LQE+ L+E + I ++ + Y E+
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEV 129
Query: 171 FQSLVPKE-KYDKNDVILEVTAGRTTGGDICQQFTREIFDMYQNYSC 216
+ LV E ++ + E+ R C++ +I M QN C
Sbjct: 130 ARKLVIIEGDLERTEERAELAESR------CREMDEQIRLMDQNLKC 170
>gi|24119203 tropomyosin 3 isoform 2 [Homo sapiens]
Length = 248
Score = 38.5 bits (88), Expect = 0.012
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 116 LAAIYQEIQETEQAIEELESMCK-----SLNKQDEKQLQELALEERQTIDQKINMLYNEL 170
LA Q+++E E+A +E E K +L +++ +LQE+ L+E + I ++ + Y E+
Sbjct: 70 LATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEV 129
Query: 171 FQSLVPKE-KYDKNDVILEVTAGRTTGGDICQQFTREIFDMYQNYSC 216
+ LV E ++ + E+ R C++ +I M QN C
Sbjct: 130 ARKLVIIEGDLERTEERAELAESR------CREMDEQIRLMDQNLKC 170
>gi|50658069 phosphodiesterase 4D interacting protein isoform 2
[Homo sapiens]
Length = 969
Score = 37.7 bits (86), Expect = 0.021
Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 72 HKALQKYMENLSKEYQTLEQCLQHIPVN-----EENRRSLNRRHAEL-APLAAIYQEIQE 125
++ L +++ +L KE +L+ + + E +R + +R+ EL + ++ +E+Q+
Sbjct: 5 YRTLSQHLNDLKKENFSLKLRIYFLEERMQQKYEASREDIYKRNIELKVEVESLKRELQD 64
Query: 126 TEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKND 184
+Q +++ + ++LN Q+E +L+ EERQ + + L Q L + + KN+
Sbjct: 65 KKQHLDKTWADVENLNSQNEAELRR-QFEERQQETEHVYELLENKIQLLQEESRLAKNE 122
>gi|157311604 phosphodiesterase 4D interacting protein isoform 1
[Homo sapiens]
Length = 2346
Score = 37.7 bits (86), Expect = 0.021
Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 72 HKALQKYMENLSKEYQTLEQCLQHIPVN-----EENRRSLNRRHAEL-APLAAIYQEIQE 125
++ L +++ +L KE +L+ + + E +R + +R+ EL + ++ +E+Q+
Sbjct: 5 YRTLSQHLNDLKKENFSLKLRIYFLEERMQQKYEASREDIYKRNIELKVEVESLKRELQD 64
Query: 126 TEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKND 184
+Q +++ + ++LN Q+E +L+ EERQ + + L Q L + + KN+
Sbjct: 65 KKQHLDKTWADVENLNSQNEAELRR-QFEERQQETEHVYELLENKIQLLQEESRLAKNE 122
>gi|50658077 phosphodiesterase 4D interacting protein isoform 4
[Homo sapiens]
Length = 173
Score = 37.7 bits (86), Expect = 0.021
Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 72 HKALQKYMENLSKEYQTLEQCLQHIPVN-----EENRRSLNRRHAEL-APLAAIYQEIQE 125
++ L +++ +L KE +L+ + + E +R + +R+ EL + ++ +E+Q+
Sbjct: 5 YRTLSQHLNDLKKENFSLKLRIYFLEERMQQKYEASREDIYKRNIELKVEVESLKRELQD 64
Query: 126 TEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKND 184
+Q +++ + ++LN Q+E +L+ EERQ + + L Q L + + KN+
Sbjct: 65 KKQHLDKTWADVENLNSQNEAELRR-QFEERQQETEHVYELLENKIQLLQEESRLAKNE 122
>gi|50658075 phosphodiesterase 4D interacting protein isoform 3
[Homo sapiens]
Length = 310
Score = 37.0 bits (84), Expect = 0.036
Identities = 27/115 (23%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 76 QKYMENLSKEYQTLEQCLQHIPVN-----EENRRSLNRRHAEL-APLAAIYQEIQETEQA 129
+K++ +L KE +L+ + + E +R + +R+ EL + ++ +E+Q+ +Q
Sbjct: 146 EKHLNDLKKENFSLKLRIYFLEERMQQKYEASREDIYKRNIELKVEVESLKRELQDKKQH 205
Query: 130 IEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKND 184
+++ + ++LN Q+E +L+ EERQ + + L Q L + + KN+
Sbjct: 206 LDKTWADVENLNSQNEAELRR-QFEERQQETEHVYELLENKIQLLQEESRLAKNE 259
>gi|56961680 coiled-coil domain containing 147 [Homo sapiens]
Length = 872
Score = 37.0 bits (84), Expect = 0.036
Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 73 KALQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEE 132
KALQ+Y++ +E Q LEQ L + ++ LN R A+ L + +Q E+
Sbjct: 240 KALQQYVQKSKEELQKLEQQL-------KEQKILNERAAK--ELEQFQMRNAKLQQENEQ 290
Query: 133 LESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAG 192
+C+ L+++++++ EL +E + ++++ + + K+ + D EV
Sbjct: 291 HSLVCEQLSQENQQKALELKAKEEEVHQMRLDIGKLNKIREQIHKKLHHTEDQKAEVEQH 350
Query: 193 RTT 195
+ T
Sbjct: 351 KET 353
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 36.2 bits (82), Expect = 0.062
Identities = 69/347 (19%), Positives = 142/347 (40%), Gaps = 38/347 (10%)
Query: 116 LAAIYQEIQETEQAIEELES--------MCKSLNKQDEKQLQELALEE-----RQTIDQK 162
+A++ +E ++A+E+ E+ M L ++++ QLQ A ++ + DQ
Sbjct: 849 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL 908
Query: 163 I-NMLYNELFQSLVPKEKYDKNDVILEVTAGRTTGGDICQQFTREIFDM---YQNYSCYK 218
I N + E + + D+ ++ E+TA + D C + R+I D+ K
Sbjct: 909 IKNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKEK 968
Query: 219 HWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSSRMQRIHTG 278
H + + GL A+++ K + + + L + +++T
Sbjct: 969 HATENKVKNLTEEMAGLDEIIAKLT--------KEKKALQEAHQQALDDLQAEEDKVNTL 1020
Query: 279 TMSVIVLPQP-DEVDVKLD-PKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLVVECQ 336
T + + L Q D+++ L+ K +R+D RAK + T ++ L + Q
Sbjct: 1021 TKAKVKLEQQVDDLEGSLEQEKKVRMDLERAKRKLEGDLKLTQESI------MDLENDKQ 1074
Query: 337 QERSQIKNKEIAFRVLRARLYQQIIEKDKRQQQSARKLQVGTRAQSERIRTYNFTQDRVS 396
Q ++K K+ L AR+ + + Q+ ++LQ E + + +V
Sbjct: 1075 QLDERLKKKDFELNALNARIEDE-QALGSQLQKKLKELQARIEELEEELEAERTARAKVE 1133
Query: 397 DHR--IAYEVRDIKEFL--CGGKGLDQLIQRLLQSADEEAIAELLDE 439
R ++ E+ +I E L GG Q+ + A+ + + L+E
Sbjct: 1134 KLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQKMRRDLEE 1180
Score = 31.6 bits (70), Expect = 1.5
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 57 WSRRYCHQDTKMLWKHKALQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPL 116
W ++Y +++ K + L K E+ L+H+ + ++L ++L
Sbjct: 1456 WKQKYEESQSELESSQKEARSLSTELFKLKNAYEESLEHLETFKRENKNLQEEISDLT-- 1513
Query: 117 AAIYQEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQ 157
+++ + + I ELE + K L + EK + ALEE +
Sbjct: 1514 ----EQLGSSGKTIHELEKVRKQL--EAEKMELQSALEEAE 1548
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 35.8 bits (81), Expect = 0.081
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 21/176 (11%)
Query: 19 LQCHIQLHSHQFRQ----IHLDTRLQVFRQNRNCILHLLSKNWSR---RYCHQDTKMLWK 71
LQ QL QF+Q + +L + +Q LL + ++ + Q L +
Sbjct: 217 LQQQEQLQQQQFQQQQEQLQQQQQLLLLQQQGQLQQQLLQQQQAQLQQQLLEQQQAQLQQ 276
Query: 72 HKALQKYMENLSKEYQTL---------EQCLQHIPVNEENRRSLNRRHAELAPLAAIYQE 122
LQ+ + ++ Q L +Q LQ P+ E + EL P+ +
Sbjct: 277 QLLLQQQEQLQQQQQQQLLQQQQEQLQQQQLQPPPLEPEEEEEVE---LELMPVDLGSE- 332
Query: 123 IQETEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKE 178
QE EQ +ELE + +Q+++QLQ EE Q ++Q++ +L Q V E
Sbjct: 333 -QELEQQRQELERQQELERQQEQRQLQLKLQEELQQLEQQLEQQQQQLEQQEVQLE 387
Score = 29.6 bits (65), Expect = 5.8
Identities = 30/154 (19%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Query: 51 HLLSKNWSRRYCHQDTKMLWKHKALQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRH 110
HL + ++ Q L + K + + L E Q + Q Q P + ++ L ++
Sbjct: 115 HLELQQQPQQDGQQQLSQLQQEKHQSVHHQELKPELQLMHQQQQLQPQQVQEQQRLQQQQ 174
Query: 111 AELAPLAA-----------IYQEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQTI 159
+L A + Q++QE + ++ E + + Q ++QLQ+ +++Q
Sbjct: 175 EQLQTQQAQEQQVLQQQEQLQQQVQEQQLLQQQQEQLQQQQLLQQQEQLQQQQFQQQQEQ 234
Query: 160 DQKINML-----YNELFQSLVPKEKYDKNDVILE 188
Q+ L +L Q L+ +++ +LE
Sbjct: 235 LQQQQQLLLLQQQGQLQQQLLQQQQAQLQQQLLE 268
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,277,998
Number of Sequences: 37866
Number of extensions: 718540
Number of successful extensions: 3491
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 253
Number of HSP's that attempted gapping in prelim test: 3120
Number of HSP's gapped (non-prelim): 680
length of query: 445
length of database: 18,247,518
effective HSP length: 105
effective length of query: 340
effective length of database: 14,271,588
effective search space: 4852339920
effective search space used: 4852339920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.