Search of human proteins with 34098970

Search of human proteins with 34098970

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|34098970 retinal degeneration 3 [Homo sapiens]
         (195 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|34098970 retinal degeneration 3 [Homo sapiens]                     391   e-109
gi|239756177 PREDICTED: hypothetical protein [Homo sapiens]            78   4e-15
gi|28269672 serologically defined colon cancer antigen 8 [Homo s...    33   0.20 
gi|110227629 translin-associated factor X interacting protein 1 ...    31   0.58 
gi|87578396 microtubule-associated protein 2 isoform 1 [Homo sap...    30   1.00 
gi|20070228 nucleobindin 1 [Homo sapiens]                              30   1.00 
gi|82775371 coiled-coil domain containing 93 [Homo sapiens]            30   1.00 
gi|21264337 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...    30   1.00 
gi|46276887 WD repeat domain 78 isoform 1 [Homo sapiens]               30   1.00 
gi|46276885 WD repeat domain 78 isoform 2 [Homo sapiens]               30   1.00 
gi|67782362 DEAH (Asp-Glu-Ala-His) box polypeptide 29 [Homo sapi...    30   1.3  
gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso...    30   1.3  
gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso...    30   1.3  
gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso...    30   1.3  
gi|64085252 hypothetical protein LOC145508 [Homo sapiens]              30   1.7  
gi|163644316 hypothetical protein LOC23255 [Homo sapiens]              30   1.7  
gi|93277096 limbin [Homo sapiens]                                      30   1.7  
gi|14042960 solute carrier family 4 member 11 [Homo sapiens]           30   1.7  
gi|119120918 coiled-coil domain containing 64 [Homo sapiens]           30   1.7  
gi|219521928 DIS3 mitotic control homolog (S. cerevisiae)-like i...    29   2.2  
gi|19115966 DIS3 mitotic control homolog (S. cerevisiae)-like is...    29   2.2  
gi|17865632 mitochondrial tumor suppressor 1 isoform 5 [Homo sap...    29   2.9  
gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo sap...    29   2.9  
gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo sap...    29   2.9  
gi|50348626 mitochondrial tumor suppressor 1 isoform 4 [Homo sap...    29   2.9  
gi|18079262 tripartite motif-containing 6 isoform 2 [Homo sapiens]     29   2.9  
gi|51477692 tripartite motif-containing 6 isoform 1 [Homo sapiens]     29   2.9  
gi|63053524 ubiquitin specific protease 1 [Homo sapiens]               29   2.9  
gi|63053522 ubiquitin specific protease 1 [Homo sapiens]               29   2.9  
gi|31543910 ubiquitin specific protease 1 [Homo sapiens]               29   2.9  

>gi|34098970 retinal degeneration 3 [Homo sapiens]
          Length = 195

 Score =  391 bits (1004), Expect = e-109
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY 60
           MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY
Sbjct: 1   MSLISWLRWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY 60

Query: 61  SWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRS 120
           SWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRS
Sbjct: 61  SWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRS 120

Query: 121 VLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPP 180
           VLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPP
Sbjct: 121 VLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPP 180

Query: 181 LRSWSMPEFRAPKAD 195
           LRSWSMPEFRAPKAD
Sbjct: 181 LRSWSMPEFRAPKAD 195


>gi|239756177 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 198

 Score = 78.2 bits (191), Expect = 4e-15
 Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 1/145 (0%)

Query: 1   MSLISWLRWNEAPSRLSTRSP-AEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVD 59
           M L  W++W +  S   T  P +++V +TL+ EL   ++E ER  +E  N  +   TGVD
Sbjct: 1   MPLFGWMKWPKNDSYKPTHYPGSDIVTKTLLRELKWHLKERERLIQEIENEQKVKKTGVD 60

Query: 60  YSWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFR 119
           Y+WL +       +   E+ QLE +C ++ P   G  + RFR++LAE +    E+  +F+
Sbjct: 61  YNWLRNYQNPHTTIPVTEQRQLEVLCSQVQPCQTGTILSRFREVLAENDVLPWEIVYIFK 120

Query: 120 SVLQEVLERMKQEEEAHKLTRQWSL 144
            VL++ L    +  E   L    S+
Sbjct: 121 QVLKDFLSSSDRGSEQEDLEDSGSM 145


>gi|28269672 serologically defined colon cancer antigen 8 [Homo
           sapiens]
          Length = 713

 Score = 32.7 bits (73), Expect = 0.20
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 56  TGVDYSWLASTPRSTYD-LSPIERL--QLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQ 112
           T  + + L+   R TYD L  ++R   +LE+ CV+ H         R RQL    +   Q
Sbjct: 617 TRSEIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQ-HGRVHETMKQRLRQLDKHSQATAQ 675

Query: 113 EVSQLFRSVLQEVLERMKQEEEAHKLTRQWSLRPR 147
           ++ QL     Q +LER    EE  +L  Q    P+
Sbjct: 676 QLVQLLSKQNQLLLERQSLSEEVDRLRTQLPSMPQ 710


>gi|110227629 translin-associated factor X interacting protein 1
           [Homo sapiens]
          Length = 658

 Score = 31.2 bits (69), Expect = 0.58
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 68  RSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQE-----PEVQEVSQLFRSVL 122
           +ST+ L   E++Q        HPS     +L +R L  E E     P VQ++ + +    
Sbjct: 505 KSTFPLKTEEQIQELMEAGGWHPSSSNADLLNYRSLFMEDEEGQSEPFVQKLWEQYMDEK 564

Query: 123 QEVLERMKQE 132
            E L+++KQE
Sbjct: 565 DEYLQQLKQE 574


>gi|87578396 microtubule-associated protein 2 isoform 1 [Homo sapiens]
          Length = 1827

 Score = 30.4 bits (67), Expect = 1.00
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 119  RSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKT-RARIS 160
            RS++ E LE + +EE+A K  R+ SL        FKT R RIS
Sbjct: 1397 RSIMTEQLETIPKEEKAEKEARRSSLEKHRKEKPFKTGRGRIS 1439


>gi|20070228 nucleobindin 1 [Homo sapiens]
          Length = 461

 Score = 30.4 bits (67), Expect = 1.00
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 12/107 (11%)

Query: 37  MREAERQQ-RERSNAVRKVCTGVDY-----SWLASTPRSTYDLSPIERLQLEDVCVKIHP 90
           MRE E ++ R R + ++ V T  D       +LAST R  +  +  E  +     V++HP
Sbjct: 286 MREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQRKEFGDTG-EGWET----VEMHP 340

Query: 91  SYCGPAILRFRQLLAEQEPEVQEVSQLFRSVLQEVLERMKQEEEAHK 137
           +Y    + RF + LA +E E+   +Q   S   E L R +   EA K
Sbjct: 341 AYTEEELRRFEEELAAREAELNAKAQRL-SQETEALGRSQGRLEAQK 386


>gi|82775371 coiled-coil domain containing 93 [Homo sapiens]
          Length = 631

 Score = 30.4 bits (67), Expect = 1.00
 Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 25/177 (14%)

Query: 5   SWLRWNEAPSRLSTRSPAEMVLETLMMELTG------QMREAERQQRERSNAVRKVCTGV 58
           S L   E+P +L T       + +L  ++        ++R +    + R N  +K  T +
Sbjct: 298 SELSAEESPEKLGTSQLHRRKVISLNKQIAQKTKHLEELRASHTSLQARYNEAKKTLTEL 357

Query: 59  DYSWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLF 118
                      TY     E+L  E   ++   S   P+IL+  + L      ++   Q F
Sbjct: 358 ----------KTYS----EKLDKEQAALEKIESKADPSILQNLRALVAMNENLKSQEQEF 403

Query: 119 RSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVER 175
           ++  +E + R++QE E  K  R     PRG   T  +        S + T  ED++R
Sbjct: 404 KAHCREEMTRLQQEIENLKAER----APRGDEKTLSSGEPPGTLTSAM-THDEDLDR 455


>gi|21264337 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
            [Homo sapiens]
          Length = 1544

 Score = 30.4 bits (67), Expect = 1.00
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 10/85 (11%)

Query: 104  LAEQEPEVQEVSQLFRSVLQEVL--------ERMKQEEEAHKLTRQWSLRPRGSLATFKT 155
            +   +  V+E  +L   V +E +        E ++    +   TR+W+++P   L + K+
Sbjct: 1385 MKSSQGSVEEQEELEEPVYEEPVYEEVGAFPELIQDTSTSFSTTREWTVKPENPLTSQKS 1444

Query: 156  RARISPFASDIRTISEDVERDTPPP 180
              +  PF S   T+ ++     PPP
Sbjct: 1445 LDQ--PFLSKSSTLGQEERPPEPPP 1467


>gi|46276887 WD repeat domain 78 isoform 1 [Homo sapiens]
          Length = 848

 Score = 30.4 bits (67), Expect = 1.00
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 72  DLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRSVLQEVLERMKQ 131
           DL  +ER+ +E++          P +  +RQL   +EPE +E   +  S   E +E   +
Sbjct: 403 DLFFMERVLMENIFQ--------PKLAAYRQLPVLKEPEPEEPEDVLESAKHEEVEEESK 454

Query: 132 EEEAHKLTRQWSLRP 146
           +EE  ++  + S  P
Sbjct: 455 KEEEEEIHAEESTIP 469


>gi|46276885 WD repeat domain 78 isoform 2 [Homo sapiens]
          Length = 545

 Score = 30.4 bits (67), Expect = 1.00
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 72  DLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRSVLQEVLERMKQ 131
           DL  +ER+ +E++          P +  +RQL   +EPE +E   +  S   E +E   +
Sbjct: 403 DLFFMERVLMENIFQ--------PKLAAYRQLPVLKEPEPEEPEDVLESAKHEEVEEESK 454

Query: 132 EEEAHKLTRQWSLRP 146
           +EE  ++  + S  P
Sbjct: 455 KEEEEEIHAEESTIP 469


>gi|67782362 DEAH (Asp-Glu-Ala-His) box polypeptide 29 [Homo
           sapiens]
          Length = 1369

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 6   WLRWNEAP------SRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVD 59
           WL W++A       +++ T  P ++ +  L+ +L    ++ ++QQ++ S   R+     +
Sbjct: 466 WLEWSDAEKKREELNKMETNKPRDLFIAKLLNKL----KQQQQQQQQHSENKRENSEDPE 521

Query: 60  YSWLASTPRSTYDLSPIERLQLEDV 84
            SW        +    +E   +ED+
Sbjct: 522 ESWENLVSDEDFSALSLESANVEDL 546


>gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
           isoform 2 [Homo sapiens]
          Length = 856

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 94  GPAILRFRQLLAEQEPEV--QEVSQLFRSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLA 151
           GP   R  QL + +E  V  +  S   + V   V E     EE H     +  R    LA
Sbjct: 181 GPEAERLEQLESGEEELVLAEYESDEEKKVASRVDEDEDDLEEEHITKIYYCSRTHSQLA 240

Query: 152 TFKTRARISPFASDIRTIS 170
            F    + SPF  D+R +S
Sbjct: 241 QFVHEVKKSPFGKDVRLVS 259


>gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
           isoform 1 [Homo sapiens]
          Length = 906

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 94  GPAILRFRQLLAEQEPEV--QEVSQLFRSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLA 151
           GP   R  QL + +E  V  +  S   + V   V E     EE H     +  R    LA
Sbjct: 181 GPEAERLEQLESGEEELVLAEYESDEEKKVASRVDEDEDDLEEEHITKIYYCSRTHSQLA 240

Query: 152 TFKTRARISPFASDIRTIS 170
            F    + SPF  D+R +S
Sbjct: 241 QFVHEVKKSPFGKDVRLVS 259


>gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
           isoform 3 [Homo sapiens]
          Length = 970

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 94  GPAILRFRQLLAEQEPEV--QEVSQLFRSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLA 151
           GP   R  QL + +E  V  +  S   + V   V E     EE H     +  R    LA
Sbjct: 181 GPEAERLEQLESGEEELVLAEYESDEEKKVASRVDEDEDDLEEEHITKIYYCSRTHSQLA 240

Query: 152 TFKTRARISPFASDIRTIS 170
            F    + SPF  D+R +S
Sbjct: 241 QFVHEVKKSPFGKDVRLVS 259


>gi|64085252 hypothetical protein LOC145508 [Homo sapiens]
          Length = 1094

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 20/138 (14%)

Query: 16  LSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDYSWLASTPRSTYDLSP 75
           LS RS ++   +  + ELT ++ EA++Q+       R+                   L  
Sbjct: 186 LSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERR-------------------LQE 226

Query: 76  IER-LQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRSVLQEVLERMKQEEE 134
           +ER ++ E   V+      G   L+ ++ L +QE +  E     ++ L++      Q E+
Sbjct: 227 LEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQ 286

Query: 135 AHKLTRQWSLRPRGSLAT 152
             +L+R+   +  GS  T
Sbjct: 287 ELELSRRLLNQSEGSRET 304


>gi|163644316 hypothetical protein LOC23255 [Homo sapiens]
          Length = 1586

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 12/107 (11%)

Query: 75   PIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRSVLQEVLERMKQEEE 134
            P+ +L+  D C      Y     L       + EPE     +  R    E   R+ +EEE
Sbjct: 1007 PLSKLKESDRCSASENLYLDALSL-------DDEPEEPPAHRPER----EFRNRLPEEEE 1055

Query: 135  AHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPPL 181
             HK   Q ++    S++ F+    ISPF  +    S   + D  PPL
Sbjct: 1056 NHKGNLQRAVSV-SSMSEFQRLMDISPFLPEKGLPSTSSKEDVTPPL 1101


>gi|93277096 limbin [Homo sapiens]
          Length = 1308

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 14/168 (8%)

Query: 14   SRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDYSWLASTPRSTYDL 73
            S + T+S    +LE+   EL    R+ E Q  ++  A ++        W+A  P    + 
Sbjct: 1002 SEMLTKSACTQILESHSRELQELERKLEDQLVQQEAAQQQQALASWQQWVADGPGILNE- 1060

Query: 74   SPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQLFRSVLQEVLERMKQEE 133
             P E      V   +H +      L   Q L EQ  +     Q    VL+++LE M+ + 
Sbjct: 1061 -PGEVDSERQVSTVLHQA------LSKSQTLLEQHQQCLREEQQNSVVLEDLLENMEADT 1113

Query: 134  EAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERDTPPPL 181
             A   +++  LR    LA++  R  + P A+  R +S  +   + P L
Sbjct: 1114 FATLCSQE--LR----LASYLARMAMVPGATLRRLLSVVLPTASQPQL 1155


>gi|14042960 solute carrier family 4 member 11 [Homo sapiens]
          Length = 891

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 18/184 (9%)

Query: 8   RWNEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRERSNAVRKVCTGVDY--SWLAS 65
           R+   P         ++++  L  +    MR       +    V    TGV Y  SWL  
Sbjct: 158 RFARDPDNNEPNCNLDLLMAMLFTDAGAPMRGKVHLLSDTIQGVTATVTGVRYQQSWLCI 217

Query: 66  TPRSTYDLSPIERLQLEDVCVK--IHPSYCGPAILRFRQLLAEQEPE-------VQEVSQ 116
                  +  ++ LQ   VC+   + P   G      R ++    P          EV++
Sbjct: 218 -------ICTMKALQKRHVCISRLVRPQNWGENSCEVRFVILVLAPPKMKSTKTAMEVAR 270

Query: 117 LFRSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISEDVERD 176
            F ++  ++  R K  E   +   + +L  +  L T  +   ++P   +  T+S    R 
Sbjct: 271 TFATMFSDIAFRQKLLETRTEEEFKEALVHQRQLLTMVSHGPVAPRTKERSTVSLPAHRH 330

Query: 177 TPPP 180
             PP
Sbjct: 331 PEPP 334


>gi|119120918 coiled-coil domain containing 64 [Homo sapiens]
          Length = 573

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 15/65 (23%), Positives = 38/65 (58%), Gaps = 7/65 (10%)

Query: 112 QEVSQLFRSVLQEVLERMKQ-EEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTIS 170
           Q++S+ +  + +E+ ++++  E+E H+L R++  R        +   R+S   SD++ + 
Sbjct: 125 QDMSRQYEQMHKELTDKLEHLEQEKHELRRRFENREG------EWEGRVSELESDVKQLQ 178

Query: 171 EDVER 175
           +++ER
Sbjct: 179 DELER 183


>gi|219521928 DIS3 mitotic control homolog (S. cerevisiae)-like
           isoform 1 [Homo sapiens]
          Length = 1054

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 45  RERSNAVRKVCTGVDYSWLASTPRSTYDLSPIERLQLEDVCVKIHPSYC-GPAILRFRQL 103
           RER  ++ K  T   Y+          D  PI  +  ++  ++ + S   G  ++ F+  
Sbjct: 129 RERGESMEKWQTRSIYNAAVWYYHHCQDRMPIVMVTEDEEAIQQYGSETEGVFVITFKNY 188

Query: 104 LAEQEPEVQEVSQLFRSVLQEVLERMKQEEEAH 136
           L    P+++   +L  S+LQ   ER  + +E+H
Sbjct: 189 LDNFWPDLKAAHELCDSILQSRRERENESQESH 221


>gi|19115966 DIS3 mitotic control homolog (S. cerevisiae)-like
           isoform 2 [Homo sapiens]
          Length = 971

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 45  RERSNAVRKVCTGVDYSWLASTPRSTYDLSPIERLQLEDVCVKIHPSYC-GPAILRFRQL 103
           RER  ++ K  T   Y+          D  PI  +  ++  ++ + S   G  ++ F+  
Sbjct: 46  RERGESMEKWQTRSIYNAAVWYYHHCQDRMPIVMVTEDEEAIQQYGSETEGVFVITFKNY 105

Query: 104 LAEQEPEVQEVSQLFRSVLQEVLERMKQEEEAH 136
           L    P+++   +L  S+LQ   ER  + +E+H
Sbjct: 106 LDNFWPDLKAAHELCDSILQSRRERENESQESH 138


>gi|17865632 mitochondrial tumor suppressor 1 isoform 5 [Homo
           sapiens]
          Length = 436

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 97  ILRFRQLLAEQEPEVQEVSQLFRSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTR 156
           IL+ +QLLA    + + ++ + + +L E  E +KQ    HK   Q  +  RG L T  T 
Sbjct: 85  ILQLKQLLACGNTKFEALTVVIQHLLSEREEALKQ----HKTLSQELVNLRGELVTASTT 140

Query: 157 A-RISPFASDIRTISE 171
             ++    ++++T+ E
Sbjct: 141 CEKLEKARNELQTVYE 156


>gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo
           sapiens]
          Length = 1270

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 97  ILRFRQLLAEQEPEVQEVSQLFRSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTR 156
           IL+ +QLLA    + + ++ + + +L E  E +KQ    HK   Q  +  RG L T  T 
Sbjct: 919 ILQLKQLLACGNTKFEALTVVIQHLLSEREEALKQ----HKTLSQELVNLRGELVTASTT 974

Query: 157 A-RISPFASDIRTISE 171
             ++    ++++T+ E
Sbjct: 975 CEKLEKARNELQTVYE 990


>gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo
           sapiens]
          Length = 1216

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 97  ILRFRQLLAEQEPEVQEVSQLFRSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTR 156
           IL+ +QLLA    + + ++ + + +L E  E +KQ    HK   Q  +  RG L T  T 
Sbjct: 865 ILQLKQLLACGNTKFEALTVVIQHLLSEREEALKQ----HKTLSQELVNLRGELVTASTT 920

Query: 157 A-RISPFASDIRTISE 171
             ++    ++++T+ E
Sbjct: 921 CEKLEKARNELQTVYE 936


>gi|50348626 mitochondrial tumor suppressor 1 isoform 4 [Homo
           sapiens]
          Length = 517

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 97  ILRFRQLLAEQEPEVQEVSQLFRSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTR 156
           IL+ +QLLA    + + ++ + + +L E  E +KQ    HK   Q  +  RG L T  T 
Sbjct: 166 ILQLKQLLACGNTKFEALTVVIQHLLSEREEALKQ----HKTLSQELVNLRGELVTASTT 221

Query: 157 A-RISPFASDIRTISE 171
             ++    ++++T+ E
Sbjct: 222 CEKLEKARNELQTVYE 237


>gi|18079262 tripartite motif-containing 6 isoform 2 [Homo sapiens]
          Length = 488

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)

Query: 111 VQEVSQLFRSVLQEVLERMKQEE-EAHKLT 139
           V+EV+Q ++   QE L+++K EE EA KLT
Sbjct: 133 VEEVAQEYQEKFQESLKKLKNEEQEAEKLT 162


>gi|51477692 tripartite motif-containing 6 isoform 1 [Homo sapiens]
          Length = 516

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)

Query: 111 VQEVSQLFRSVLQEVLERMKQEE-EAHKLT 139
           V+EV+Q ++   QE L+++K EE EA KLT
Sbjct: 161 VEEVAQEYQEKFQESLKKLKNEEQEAEKLT 190


>gi|63053524 ubiquitin specific protease 1 [Homo sapiens]
          Length = 785

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 17/175 (9%)

Query: 4   ISWLRW-NEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRE-----RSNAVRKVCTG 57
           I+WL+   + PS LS       +  T    + GQ +E E    E      S+     C G
Sbjct: 339 INWLKSATKQPSILSKFCSLGKI--TTNQGVKGQSKENECDPEEDLGKCESDNTTNGC-G 395

Query: 58  VDYSWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQL 117
           ++      TP +  ++ PI + + +     +   + G  +LR R L  E   E +E  Q 
Sbjct: 396 LESPGNTVTPVNVNEVKPINKGEEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQD 455

Query: 118 FRSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISED 172
               +QE  + + + EE+ +++ +    P+  + T   R  IS FAS  R + ED
Sbjct: 456 ISVPVQE--DELSKVEESSEISPE----PKTEMKTL--RWAISQFASVERIVGED 502


>gi|63053522 ubiquitin specific protease 1 [Homo sapiens]
          Length = 785

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 17/175 (9%)

Query: 4   ISWLRW-NEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRE-----RSNAVRKVCTG 57
           I+WL+   + PS LS       +  T    + GQ +E E    E      S+     C G
Sbjct: 339 INWLKSATKQPSILSKFCSLGKI--TTNQGVKGQSKENECDPEEDLGKCESDNTTNGC-G 395

Query: 58  VDYSWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQL 117
           ++      TP +  ++ PI + + +     +   + G  +LR R L  E   E +E  Q 
Sbjct: 396 LESPGNTVTPVNVNEVKPINKGEEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQD 455

Query: 118 FRSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISED 172
               +QE  + + + EE+ +++ +    P+  + T   R  IS FAS  R + ED
Sbjct: 456 ISVPVQE--DELSKVEESSEISPE----PKTEMKTL--RWAISQFASVERIVGED 502


>gi|31543910 ubiquitin specific protease 1 [Homo sapiens]
          Length = 785

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 17/175 (9%)

Query: 4   ISWLRW-NEAPSRLSTRSPAEMVLETLMMELTGQMREAERQQRE-----RSNAVRKVCTG 57
           I+WL+   + PS LS       +  T    + GQ +E E    E      S+     C G
Sbjct: 339 INWLKSATKQPSILSKFCSLGKI--TTNQGVKGQSKENECDPEEDLGKCESDNTTNGC-G 395

Query: 58  VDYSWLASTPRSTYDLSPIERLQLEDVCVKIHPSYCGPAILRFRQLLAEQEPEVQEVSQL 117
           ++      TP +  ++ PI + + +     +   + G  +LR R L  E   E +E  Q 
Sbjct: 396 LESPGNTVTPVNVNEVKPINKGEEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQD 455

Query: 118 FRSVLQEVLERMKQEEEAHKLTRQWSLRPRGSLATFKTRARISPFASDIRTISED 172
               +QE  + + + EE+ +++ +    P+  + T   R  IS FAS  R + ED
Sbjct: 456 ISVPVQE--DELSKVEESSEISPE----PKTEMKTL--RWAISQFASVERIVGED 502


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.129    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,961,066
Number of Sequences: 37866
Number of extensions: 320770
Number of successful extensions: 1516
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1483
Number of HSP's gapped (non-prelim): 69
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.