RD3 26316

Name: RD3	Sequence: fasta or formatted (195aa)		NCBI GI: 34098970
Description: retinal degeneration 3		Referenced in: Crystallins and Other Eye Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.7 13 1 C cysteine 1.5 3 1 D aspartate 3.6 7 1 E glutamate 10.8 21 3 F phenylalanine 2.6 5 1 G glycine 2.1 4 1 H histidine 1.0 2 1 I isoleucine 3.6 7 1 K lysine 3.1 6 1 L leucine 10.3 20 2 M methionine 3.6 7 2 N asparagine 1.0 2 1 P proline 7.2 14 3 Q glutamine 5.6 11 2 R arginine 11.8 23 1 S serine 10.3 20 1 T threonine 5.6 11 1 V valine 5.6 11 1 W tryptophan 2.6 5 1 Y tyrosine 1.5 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 retinal degeneration 3 LOC647286 0.145 PREDICTED: hypothetical protein SDCCAG8 0.022 serologically defined colon cancer antigen 8 TSNAXIP1 0.016 translin-associated factor X interacting protein 1 ... MAP2 0.014 microtubule-associated protein 2 isoform 1 NUCB1 0.014 nucleobindin 1 CCDC93 0.014 coiled-coil domain containing 93 ARAP3 0.014 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom... WDR78 0.014 WD repeat domain 78 isoform 1 WDR78 0.014 WD repeat domain 78 isoform 2 DHX29 0.014 DEAH (Asp-Glu-Ala-His) box polypeptide 29 DDX11 0.014 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... DDX11 0.014 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... DDX11 0.014 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... C14orf145 0.014 hypothetical protein LOC145508 KIAA0802 0.014 hypothetical protein LOC23255 EVC2 0.014 limbin SLC4A11 0.014 solute carrier family 4 member 11 CCDC64 0.014 coiled-coil domain containing 64 DIS3L 0.011 DIS3 mitotic control homolog (S. cerevisiae)-like i... DIS3L 0.011 DIS3 mitotic control homolog (S. cerevisiae)-like is... MTUS1 0.011 mitochondrial tumor suppressor 1 isoform 5 MTUS1 0.011 mitochondrial tumor suppressor 1 isoform 1 MTUS1 0.011 mitochondrial tumor suppressor 1 isoform 2 MTUS1 0.011 mitochondrial tumor suppressor 1 isoform 4 TRIM6 0.011 tripartite motif-containing 6 isoform 2 TRIM6 0.011 tripartite motif-containing 6 isoform 1 USP1 0.011 ubiquitin specific protease 1 USP1 0.011 ubiquitin specific protease 1 USP1 0.011 ubiquitin specific protease 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.