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Search of human proteins with 33695078
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33695078 protein phosphatase 2, regulatory subunit B'', beta
isoform 1 [Homo sapiens]
(575 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33695078 protein phosphatase 2, regulatory subunit B'', beta ... 1188 0.0
gi|32967586 protein phosphatase 2, regulatory subunit B'', alpha... 601 e-172
gi|19923229 protein phosphatase 2, regulatory subunit B'', alpha... 601 e-172
gi|41349491 protein phosphatase 2, regulatory subunit B'', beta ... 363 e-100
gi|239758164 PREDICTED: similar to protein phosphatase 2A 48 kDa... 207 2e-53
gi|31542242 serine/threonine-protein phosphatase 2A regulatory s... 118 2e-26
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 47 5e-05
gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribo... 46 8e-05
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 42 0.001
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 42 0.002
gi|163965366 nascent polypeptide-associated complex alpha subuni... 42 0.002
gi|13194201 reticulon 4 receptor precursor [Homo sapiens] 41 0.003
gi|19924099 synapsin I isoform Ia [Homo sapiens] 41 0.003
gi|19924097 synapsin I isoform Ib [Homo sapiens] 41 0.003
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 41 0.003
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 40 0.006
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 40 0.006
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 40 0.006
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 40 0.006
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 40 0.006
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 40 0.008
gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho... 39 0.010
gi|33356148 formin-like 1 [Homo sapiens] 39 0.010
gi|91208420 bassoon protein [Homo sapiens] 39 0.013
gi|33286446 opioid growth factor receptor [Homo sapiens] 39 0.017
gi|54860079 nadrin isoform 1 [Homo sapiens] 38 0.029
gi|54860105 nadrin isoform 2 [Homo sapiens] 38 0.029
gi|186700625 Rab-like GTP-binding protein 1 isoform 2 [Homo sapi... 37 0.038
gi|95147356 mitogen-activated protein kinase 15 [Homo sapiens] 37 0.038
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 37 0.049
>gi|33695078 protein phosphatase 2, regulatory subunit B'', beta
isoform 1 [Homo sapiens]
Length = 575
Score = 1188 bits (3074), Expect = 0.0
Identities = 575/575 (100%), Positives = 575/575 (100%)
Query: 1 MPPGKVLQPVLKMKVDELFLYWLSEASTQRMLQDCLRRIKAPGRDQPTPGDGEQPGAWPT 60
MPPGKVLQPVLKMKVDELFLYWLSEASTQRMLQDCLRRIKAPGRDQPTPGDGEQPGAWPT
Sbjct: 1 MPPGKVLQPVLKMKVDELFLYWLSEASTQRMLQDCLRRIKAPGRDQPTPGDGEQPGAWPT 60
Query: 61 APLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRGTRRSAGTRVVQTRKEEPLPPA 120
APLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRGTRRSAGTRVVQTRKEEPLPPA
Sbjct: 61 APLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRGTRRSAGTRVVQTRKEEPLPPA 120
Query: 121 TSQSIPTFYFPRGRPQDSVNVDAVISKIESTFARFPHERATMDDMGLVAKACGCPLYWKG 180
TSQSIPTFYFPRGRPQDSVNVDAVISKIESTFARFPHERATMDDMGLVAKACGCPLYWKG
Sbjct: 121 TSQSIPTFYFPRGRPQDSVNVDAVISKIESTFARFPHERATMDDMGLVAKACGCPLYWKG 180
Query: 181 PLFYGAGGERTGSVSVHKFVAMWRKILQNCHDDAAKFVHLLMSPGCNYLVQEDFVPFLQD 240
PLFYGAGGERTGSVSVHKFVAMWRKILQNCHDDAAKFVHLLMSPGCNYLVQEDFVPFLQD
Sbjct: 181 PLFYGAGGERTGSVSVHKFVAMWRKILQNCHDDAAKFVHLLMSPGCNYLVQEDFVPFLQD 240
Query: 241 VVNTHPGLSFLKEASEFHSRYITTVIQRIFYAVNRSWSGRITCAELRRSSFLQNVALLEE 300
VVNTHPGLSFLKEASEFHSRYITTVIQRIFYAVNRSWSGRITCAELRRSSFLQNVALLEE
Sbjct: 241 VVNTHPGLSFLKEASEFHSRYITTVIQRIFYAVNRSWSGRITCAELRRSSFLQNVALLEE 300
Query: 301 EADINQLTEFFSYEHFYVIYCKFWELDTDHDLLIDADDLARHNDHALSTKMIDRIFSGAV 360
EADINQLTEFFSYEHFYVIYCKFWELDTDHDLLIDADDLARHNDHALSTKMIDRIFSGAV
Sbjct: 301 EADINQLTEFFSYEHFYVIYCKFWELDTDHDLLIDADDLARHNDHALSTKMIDRIFSGAV 360
Query: 361 TRGRKVQKEGKISYADFVWFLISEEDKKTPTSIEYWFRCMDLDGDGALSMFELEYFYEEQ 420
TRGRKVQKEGKISYADFVWFLISEEDKKTPTSIEYWFRCMDLDGDGALSMFELEYFYEEQ
Sbjct: 361 TRGRKVQKEGKISYADFVWFLISEEDKKTPTSIEYWFRCMDLDGDGALSMFELEYFYEEQ 420
Query: 421 CRRLDSMAIEALPFQDCLCQMLDLVKPRTEGKITLQDLKRCKLANVFFDTFFNIEKYLDH 480
CRRLDSMAIEALPFQDCLCQMLDLVKPRTEGKITLQDLKRCKLANVFFDTFFNIEKYLDH
Sbjct: 421 CRRLDSMAIEALPFQDCLCQMLDLVKPRTEGKITLQDLKRCKLANVFFDTFFNIEKYLDH 480
Query: 481 EQKEQISLLRDGDSGGPELSDWEKYAAEEYDILVAEETAGEPWEDGFEAELSPVEQKLSA 540
EQKEQISLLRDGDSGGPELSDWEKYAAEEYDILVAEETAGEPWEDGFEAELSPVEQKLSA
Sbjct: 481 EQKEQISLLRDGDSGGPELSDWEKYAAEEYDILVAEETAGEPWEDGFEAELSPVEQKLSA 540
Query: 541 LRSPLAQRPFFEAPSPLGAVDLYEYACGDEDLEPL 575
LRSPLAQRPFFEAPSPLGAVDLYEYACGDEDLEPL
Sbjct: 541 LRSPLAQRPFFEAPSPLGAVDLYEYACGDEDLEPL 575
>gi|32967586 protein phosphatase 2, regulatory subunit B'', alpha
isoform 2 [Homo sapiens]
Length = 529
Score = 601 bits (1550), Expect = e-172
Identities = 285/458 (62%), Positives = 356/458 (77%), Gaps = 22/458 (4%)
Query: 74 PGTPGPGPALPLGAASSPRN---APHVRGTRRSAGTRVVQTRKEEPLPPATSQSIPTFYF 130
PGTP P PA + SSPR PHV + PL S +IP FYF
Sbjct: 53 PGTPLPPPAT---SPSSPRPLSPVPHVNNVVNA------------PL----SINIPRFYF 93
Query: 131 PRGRPQDSVNVDAVISKIESTFARFPHERATMDDMGLVAKACGCPLYWKGPLFYGAGGER 190
P G P N + +S+IE+ F ++A + +MG +AK CGCPLYWK P+F AGGE+
Sbjct: 94 PEGLPDTCSNHEQTLSRIETAFMDIEEQKADIYEMGKIAKVCGCPLYWKAPMFRAAGGEK 153
Query: 191 TGSVSVHKFVAMWRKILQNCHDDAAKFVHLLMSPGCNYLVQEDFVPFLQDVVNTHPGLSF 250
TG V+ F+AMWRK+L N HDDA+KF+ LL P C+ L QEDF+P LQDVV+THPGL+F
Sbjct: 154 TGFVTAQSFIAMWRKLLNNHHDDASKFICLLAKPNCSSLEQEDFIPLLQDVVDTHPGLTF 213
Query: 251 LKEASEFHSRYITTVIQRIFYAVNRSWSGRITCAELRRSSFLQNVALLEEEADINQLTEF 310
LK+A EFHSRYITTVIQRIFY VNRSWSG+IT E+R+S+FLQ +ALLEEE DINQ+T++
Sbjct: 214 LKDAPEFHSRYITTVIQRIFYTVNRSWSGKITSTEIRKSNFLQTLALLEEEEDINQITDY 273
Query: 311 FSYEHFYVIYCKFWELDTDHDLLIDADDLARHNDHALSTKMIDRIFSGAVTRGRKVQKEG 370
FSYEHFYVIYCKFWELDTDHDL I DL+R+ND A S+++I+RIFSGAVTRG+ +QKEG
Sbjct: 274 FSYEHFYVIYCKFWELDTDHDLYISQADLSRYNDQASSSRIIERIFSGAVTRGKTIQKEG 333
Query: 371 KISYADFVWFLISEEDKKTPTSIEYWFRCMDLDGDGALSMFELEYFYEEQCRRLDSMAIE 430
++SYADFVWFLISEEDK+ PTSIEYWFRCMD+DGDG LSM+ELEYFYEEQC R+++M IE
Sbjct: 334 RMSYADFVWFLISEEDKRNPTSIEYWFRCMDVDGDGVLSMYELEYFYEEQCERMEAMGIE 393
Query: 431 ALPFQDCLCQMLDLVKPRTEGKITLQDLKRCKLANVFFDTFFNIEKYLDHEQKEQISLLR 490
LPF D LCQMLDLVKP +GKITL+DLKRC++A++F+DTFFN+EKYLDHEQ++ ++ +
Sbjct: 394 PLPFHDLLCQMLDLVKPAVDGKITLRDLKRCRMAHIFYDTFFNLEKYLDHEQRDPFAVQK 453
Query: 491 DGDSGGPELSDWEKYAAEEYDILVAEETAGEPWEDGFE 528
D ++ GPE SDW+++AAEEY+ LVAEE+A +++GFE
Sbjct: 454 DVENDGPEPSDWDRFAAEEYETLVAEESAQAQFQEGFE 491
>gi|19923229 protein phosphatase 2, regulatory subunit B'', alpha
isoform 1 [Homo sapiens]
Length = 1150
Score = 601 bits (1550), Expect = e-172
Identities = 285/458 (62%), Positives = 356/458 (77%), Gaps = 22/458 (4%)
Query: 74 PGTPGPGPALPLGAASSPRN---APHVRGTRRSAGTRVVQTRKEEPLPPATSQSIPTFYF 130
PGTP P PA + SSPR PHV + PL S +IP FYF
Sbjct: 674 PGTPLPPPAT---SPSSPRPLSPVPHVNNVVNA------------PL----SINIPRFYF 714
Query: 131 PRGRPQDSVNVDAVISKIESTFARFPHERATMDDMGLVAKACGCPLYWKGPLFYGAGGER 190
P G P N + +S+IE+ F ++A + +MG +AK CGCPLYWK P+F AGGE+
Sbjct: 715 PEGLPDTCSNHEQTLSRIETAFMDIEEQKADIYEMGKIAKVCGCPLYWKAPMFRAAGGEK 774
Query: 191 TGSVSVHKFVAMWRKILQNCHDDAAKFVHLLMSPGCNYLVQEDFVPFLQDVVNTHPGLSF 250
TG V+ F+AMWRK+L N HDDA+KF+ LL P C+ L QEDF+P LQDVV+THPGL+F
Sbjct: 775 TGFVTAQSFIAMWRKLLNNHHDDASKFICLLAKPNCSSLEQEDFIPLLQDVVDTHPGLTF 834
Query: 251 LKEASEFHSRYITTVIQRIFYAVNRSWSGRITCAELRRSSFLQNVALLEEEADINQLTEF 310
LK+A EFHSRYITTVIQRIFY VNRSWSG+IT E+R+S+FLQ +ALLEEE DINQ+T++
Sbjct: 835 LKDAPEFHSRYITTVIQRIFYTVNRSWSGKITSTEIRKSNFLQTLALLEEEEDINQITDY 894
Query: 311 FSYEHFYVIYCKFWELDTDHDLLIDADDLARHNDHALSTKMIDRIFSGAVTRGRKVQKEG 370
FSYEHFYVIYCKFWELDTDHDL I DL+R+ND A S+++I+RIFSGAVTRG+ +QKEG
Sbjct: 895 FSYEHFYVIYCKFWELDTDHDLYISQADLSRYNDQASSSRIIERIFSGAVTRGKTIQKEG 954
Query: 371 KISYADFVWFLISEEDKKTPTSIEYWFRCMDLDGDGALSMFELEYFYEEQCRRLDSMAIE 430
++SYADFVWFLISEEDK+ PTSIEYWFRCMD+DGDG LSM+ELEYFYEEQC R+++M IE
Sbjct: 955 RMSYADFVWFLISEEDKRNPTSIEYWFRCMDVDGDGVLSMYELEYFYEEQCERMEAMGIE 1014
Query: 431 ALPFQDCLCQMLDLVKPRTEGKITLQDLKRCKLANVFFDTFFNIEKYLDHEQKEQISLLR 490
LPF D LCQMLDLVKP +GKITL+DLKRC++A++F+DTFFN+EKYLDHEQ++ ++ +
Sbjct: 1015 PLPFHDLLCQMLDLVKPAVDGKITLRDLKRCRMAHIFYDTFFNLEKYLDHEQRDPFAVQK 1074
Query: 491 DGDSGGPELSDWEKYAAEEYDILVAEETAGEPWEDGFE 528
D ++ GPE SDW+++AAEEY+ LVAEE+A +++GFE
Sbjct: 1075 DVENDGPEPSDWDRFAAEEYETLVAEESAQAQFQEGFE 1112
>gi|41349491 protein phosphatase 2, regulatory subunit B'', beta
isoform 2 [Homo sapiens]
Length = 176
Score = 363 bits (931), Expect = e-100
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 400 MDLDGDGALSMFELEYFYEEQCRRLDSMAIEALPFQDCLCQMLDLVKPRTEGKITLQDLK 459
MDLDGDGALSMFELEYFYEEQCRRLDSMAIEALPFQDCLCQMLDLVKPRTEGKITLQDLK
Sbjct: 1 MDLDGDGALSMFELEYFYEEQCRRLDSMAIEALPFQDCLCQMLDLVKPRTEGKITLQDLK 60
Query: 460 RCKLANVFFDTFFNIEKYLDHEQKEQISLLRDGDSGGPELSDWEKYAAEEYDILVAEETA 519
RCKLANVFFDTFFNIEKYLDHEQKEQISLLRDGDSGGPELSDWEKYAAEEYDILVAEETA
Sbjct: 61 RCKLANVFFDTFFNIEKYLDHEQKEQISLLRDGDSGGPELSDWEKYAAEEYDILVAEETA 120
Query: 520 GEPWEDGFEAELSPVEQKLSALRSPLAQRPFFEAPSPLGAVDLYEYACGDEDLEPL 575
GEPWEDGFEAELSPVEQKLSALRSPLAQRPFFEAPSPLGAVDLYEYACGDEDLEPL
Sbjct: 121 GEPWEDGFEAELSPVEQKLSALRSPLAQRPFFEAPSPLGAVDLYEYACGDEDLEPL 176
>gi|239758164 PREDICTED: similar to protein phosphatase 2A 48 kDa
regulatory subunit [Homo sapiens]
Length = 290
Score = 207 bits (527), Expect = 2e-53
Identities = 95/96 (98%), Positives = 96/96 (100%)
Query: 170 KACGCPLYWKGPLFYGAGGERTGSVSVHKFVAMWRKILQNCHDDAAKFVHLLMSPGCNYL 229
+ACGCPLYWKGPLFYGAGGERTGSVSVHKFVAMWRKILQNCHDDAAKFVHLLMSPGCNYL
Sbjct: 85 QACGCPLYWKGPLFYGAGGERTGSVSVHKFVAMWRKILQNCHDDAAKFVHLLMSPGCNYL 144
Query: 230 VQEDFVPFLQDVVNTHPGLSFLKEASEFHSRYITTV 265
VQEDFVPFLQDVVNTHPGLSFLKEASEFHSRYITTV
Sbjct: 145 VQEDFVPFLQDVVNTHPGLSFLKEASEFHSRYITTV 180
>gi|31542242 serine/threonine-protein phosphatase 2A regulatory
subunit B'' gamma subunit [Homo sapiens]
Length = 453
Score = 118 bits (295), Expect = 2e-26
Identities = 68/279 (24%), Positives = 148/279 (53%), Gaps = 12/279 (4%)
Query: 225 GCNYLVQEDFVPFLQDVVNTHPGLSFLKEASEFHSRYITTVIQRIFYAVNRSWSGRITCA 284
G YL + D ++ +++ T P L L+++ F+S Y+ T +++ F+ ++ +G+I
Sbjct: 184 GQGYLRESDLENYILELIPTLPQLDGLEKS--FYSFYVCTAVRKFFFFLDPLRTGKIKIQ 241
Query: 285 ELRRSSFLQNVALLEEE--ADINQLTEFFSYEHFYVIYCKFWELDTDHDLLIDADDLARH 342
++ SFL ++ L +E + +Q T +FS +Y ++ LD DH+ ++ ++L+R+
Sbjct: 242 DILACSFLDDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRY 301
Query: 343 NDHALSTKMIDRIFSGAVTRGRKVQKEGKISYADFVWFLISEEDKKTPTSIEYWFRCMDL 402
++ +DR+F +T +G++ Y ++ F+++ E++K P +++Y F+ +D+
Sbjct: 302 GTATMTNVFLDRVFQECLTY------DGEMDYKTYLDFVLALENRKEPAALQYIFKLLDI 355
Query: 403 DGDGALSMFELEYFYEEQCRRLDSMAIEALPFQDCLCQMLDLVKPRTEGKITLQDLKRCK 462
+ G L++F L YF+ + + + FQD ++ D+VKP+ KI+LQDL
Sbjct: 356 ENKGYLNVFSLNYFFRAIQELMKIHGQDPVSFQDVKDEIFDMVKPKDPLKISLQDLINSN 415
Query: 463 LANVFFDTFFNIEKYLDHEQKEQISLLRDGDSGGPELSD 501
+ ++ + +E +E +L+ + +L D
Sbjct: 416 QGDTVTTILIDLNGFWTYENRE--ALVANDSENSADLDD 452
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 47.0 bits (110), Expect = 5e-05
Identities = 32/87 (36%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 33 QDCLRRIKAPGRDQPTPGDGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSPR 92
QD + + A G P PG G P A +AP A P SG P PGP P P S+P
Sbjct: 104 QDSSKPVVAQGPG-PAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPP 162
Query: 93 NAPHVRGTRRSAGTRVVQTRKEEPLPP 119
AP T S+G + P PP
Sbjct: 163 GAP--PPTPPSSGVPTTPPQAGGPPPP 187
Score = 33.1 bits (74), Expect = 0.71
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 47 PTPGDGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSP-RNAPHVRGTRR 102
P PG G + G P P P G +P G GPG + P G P R RG R+
Sbjct: 192 PGPGPGPKQGPGPGGPKGGKMPGGPKPGG--GPGLSTPGGHPKPPHRGGGEPRGGRQ 246
Score = 30.8 bits (68), Expect = 3.5
Identities = 23/78 (29%), Positives = 26/78 (33%), Gaps = 5/78 (6%)
Query: 42 PGRDQPTPGDGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRGTR 101
PG PTP P P A P P P PGPGP G + G
Sbjct: 162 PGAPPPTPPSSGVPTTPPQA--GGPPP---PPAAVPGPGPGPKQGPGPGGPKGGKMPGGP 216
Query: 102 RSAGTRVVQTRKEEPLPP 119
+ G + T P PP
Sbjct: 217 KPGGGPGLSTPGGHPKPP 234
>gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribose
polymerase [Homo sapiens]
Length = 1327
Score = 46.2 bits (108), Expect = 8e-05
Identities = 54/195 (27%), Positives = 74/195 (37%), Gaps = 15/195 (7%)
Query: 41 APGRDQPTPGDGE--QPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAAS-----SPRN 93
APG P P PG P A+P SGL P +P G ALP G S PR+
Sbjct: 21 APGASAPPPPPPPPLSPGLAPGTTPASPTASGLAPFASPRHGLALPEGDGSRDPPDRPRS 80
Query: 94 APHVRGTRRSAGTRVVQTRKEEPLPPATSQSIPTFYFPRGRPQDSVNVDAVISKIESTFA 153
V GT + T + T P+ PA S S P S N + S S+ +
Sbjct: 81 PDPVDGTSCCSTTSTICTVAAAPVVPAVSTSSAAGVAPNPAGSGSNNSPSSSSSPTSSSS 140
Query: 154 RFPHERATMDDMGLVAKACGCPLYWKGPLFYGAGGERTGSVSVHKFVAMWRKILQNCHD- 212
P + L + PL GA G TG +V R++L+ C +
Sbjct: 141 SSPSSPGS----SLAESPEAAGVSSTAPLGPGAAGPGTGVPAVS---GALRELLEACRNG 193
Query: 213 DAAKFVHLLMSPGCN 227
D ++ L+ + N
Sbjct: 194 DVSRVKRLVDAANVN 208
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 42.4 bits (98), Expect = 0.001
Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 41 APGRDQPTPGDGEQPGAWPTAPLAAPRPSGLEP---------PGTPG-PGPALPL----G 86
A G P+ G G PGA +P AA SG P PG+PG PGP+ P G
Sbjct: 1527 AYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPG 1586
Query: 87 AASSPRNAPHVRGTR-RSAGTRVVQTRKEEPLPPATSQSIPTF 128
A SP +P RS G Q+ P P+ S + P++
Sbjct: 1587 GAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSY 1629
Score = 36.6 bits (83), Expect = 0.064
Identities = 21/82 (25%), Positives = 35/82 (42%)
Query: 47 PTPGDGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRGTRRSAGT 106
P+PG P PT+P PR G P +P P P + +SP +P ++ +
Sbjct: 1583 PSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPS 1642
Query: 107 RVVQTRKEEPLPPATSQSIPTF 128
+ P P+ S + P++
Sbjct: 1643 YSPTSPSYSPTSPSYSPTSPSY 1664
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 41.6 bits (96), Expect = 0.002
Identities = 30/90 (33%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 37 RRIKAPGRDQPTPGDGEQPGAWPTAPLAAPRPSGLEPPGTP--------GPGPALPLGAA 88
RR+ G P G P P P P P GL P G P GP PA PL AA
Sbjct: 154 RRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAA 213
Query: 89 SSP----RNAPHVRGTRRSAGTRVVQTRKE 114
P AP + A R V ++E
Sbjct: 214 QGPGGGGAGAPGLAAAIAGAKLRKVSKQEE 243
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 41.6 bits (96), Expect = 0.002
Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 47 PTPGDG---EQPGAWPTAPLAAPRPSGLEPPGTPGP--GPALPLGAASSPRNAPHVRGTR 101
P+P G P PT P A P PS PGTP P P P SP+ P + T
Sbjct: 1295 PSPKGGPATSPPKGAPTPPAATP-PSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATT 1353
Query: 102 RSA-GTRVVQTRKEEPLPPATSQS 124
S+ G + KE P PPA + S
Sbjct: 1354 PSSKGGPTTPSSKEGPTPPAATPS 1377
Score = 36.6 bits (83), Expect = 0.064
Identities = 35/114 (30%), Positives = 41/114 (35%), Gaps = 27/114 (23%)
Query: 40 KAPGRDQP-----TP---GDGEQPGAWPTAPLAAPRP-------SGLEPPGTPGP--GPA 82
KAP P TP GD P P +P P P S + P TP P P
Sbjct: 1445 KAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPT 1504
Query: 83 LPLGAASSPRNAPHVRGTRR----------SAGTRVVQTRKEEPLPPATSQSIP 126
LP SSP+ P +RR S T KE +PPA + P
Sbjct: 1505 LPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSP 1558
Score = 32.7 bits (73), Expect = 0.93
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 59 PTAPLAAPRPSG---LEPPGTPGPGPALPLGAAS---------SPRNAPHVRGTRRSAGT 106
PT P A P G + PP +P GPA+P SP+ AP TR A T
Sbjct: 1369 PTPPAATPSHKGGPAMTPP-SPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAAT 1427
Query: 107 RVVQTRKEEPLPPATSQSIPTFYFPRGRP 135
+ P + + P P+G P
Sbjct: 1428 PSKGDLTPPAVTPVSLKKAPATSAPKGGP 1456
Score = 32.3 bits (72), Expect = 1.2
Identities = 25/89 (28%), Positives = 30/89 (33%), Gaps = 16/89 (17%)
Query: 42 PGRDQPTPGDGEQPGA--WPTAPLAAPRPSGLEPPGTPGP--GPALPLGAASSPRNAPHV 97
P P+P G + W P AA PS P TP P P P SP+ P
Sbjct: 943 PAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGP-- 1000
Query: 98 RGTRRSAGTRVVQTRKEEPLPPATSQSIP 126
+ K P PPA + P
Sbjct: 1001 ----------ATPSPKGAPTPPAVTPPSP 1019
Score = 32.3 bits (72), Expect = 1.2
Identities = 28/87 (32%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 47 PTPGDGEQPGAWPTAP---LAAPRPSGLEPPGTPGPGPALPLG--AASSPRNAPHVRGTR 101
P G P A P +P LA P P G P TP P P G A SP+ AP
Sbjct: 1167 PPKGAPTTPAATPPSPKGGLATPSPKGA--PTTPAATPPSPKGGLATPSPKGAPTTPAAT 1224
Query: 102 RSA--GTRVVQTRKEEPLPPATSQSIP 126
+ G + K P PA + P
Sbjct: 1225 PPSPKGGLATPSPKGAPTTPAATPPSP 1251
Score = 31.6 bits (70), Expect = 2.1
Identities = 28/104 (26%), Positives = 36/104 (34%), Gaps = 16/104 (15%)
Query: 25 EASTQRMLQDCLRRIKAPGRDQPTPGDGEQPGAWPTAPLAAPRPSGLEPPGTPGP--GPA 82
+A M ++ +A + P GA PT P A P PS P TP P P
Sbjct: 907 QAPALSMTSSSPKKARATPAPKGIPASPSPKGA-PTPPAATP-PSPKGGPATPSPKWAPT 964
Query: 83 LPLGAASSPRNAPHVRGTRRSAGTRVVQTRKEEPLPPATSQSIP 126
P SP+ P + K P PPA + P
Sbjct: 965 PPAATPPSPKGGP------------ATPSPKGAPTPPAATPPSP 996
Score = 29.6 bits (65), Expect = 7.9
Identities = 30/102 (29%), Positives = 37/102 (36%), Gaps = 20/102 (19%)
Query: 47 PTPGDGEQP----GAWPTAPLAAPRPSGLEPPGTPGPGPAL--PLGAAS-------SPRN 93
PTP P G +P AP P PP G GPA P GA + SP+
Sbjct: 963 PTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKG-GPATPSPKGAPTPPAVTPPSPKG 1021
Query: 94 APHVRGTRRSAGTRVVQTRKEEPLPPATSQSIPTFYFPRGRP 135
+P + A T T PP+ S P+G P
Sbjct: 1022 SPAATPFPKGASTPPAAT------PPSPKGSPAATPLPKGAP 1057
Score = 29.6 bits (65), Expect = 7.9
Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 15/100 (15%)
Query: 42 PGRDQPTPGDG---EQPGAWPTAPLAAPR-----PSGLEPPGTPGP----GPALPLGAAS 89
P P+P G P PT P A P P+ P G P P P+L G A+
Sbjct: 1221 PAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLAT 1280
Query: 90 SPRNA---PHVRGTRRSAGTRVVQTRKEEPLPPATSQSIP 126
P P V G K P PPA + P
Sbjct: 1281 PPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSP 1320
>gi|13194201 reticulon 4 receptor precursor [Homo sapiens]
Length = 473
Score = 40.8 bits (94), Expect = 0.003
Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 40 KAPGRDQPTPGDGEQP--------GAWPTA---PLAAPRPSGLEPPGTPGPGPALPLGAA 88
+ P D P PG+G P G P + PL A RP G EPPG P GP G +
Sbjct: 362 RVPPGDSP-PGNGSGPRHINDSPFGTLPGSAEPPLTAVRPEGSEPPGFPTSGPRRRPGCS 420
Query: 89 SSPRNAPHVR-GTRRSAGTRVVQTRKEEPLPPATSQSIP 126
R H R G S G + LP T P
Sbjct: 421 RKNRTRSHCRLGQAGSGGGGTGDSEGSGALPSLTCSLTP 459
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 40.8 bits (94), Expect = 0.003
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 18/129 (13%)
Query: 12 KMKVDELFLYWLSEASTQRMLQDCLRRIKAPGRDQ----PTPGD---GEQPGAWPTAPLA 64
K + EL + +++A ++ +D +PGR P+PG G Q P P A
Sbjct: 403 KQLIVELVVNKMAQALPRQRQRDA-----SPGRGSHGQTPSPGALPLGRQTSQQPAGPPA 457
Query: 65 APRPSGLEPPGTPGPGP---ALPLGAASSPRNAPHVRGTRRSAGTRVVQ---TRKEEPLP 118
RP P PGPGP PL P+ H+ G AG+ + Q + P
Sbjct: 458 QQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQ 517
Query: 119 PATSQSIPT 127
PA+ + PT
Sbjct: 518 PASQAAPPT 526
Score = 34.7 bits (78), Expect = 0.24
Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 19/109 (17%)
Query: 47 PTPGDGEQP---GAWPTAPLAAPRPSGLEPPGTPGP----------GPALPLGAASSP-- 91
PT G G Q P AP AA P+ P GP GPA P + + P
Sbjct: 525 PTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGG 584
Query: 92 --RNAPHVRGTRRSAGTRVVQTRKEEPL--PPATSQSIPTFYFPRGRPQ 136
R P + + TR P PP T Q P+ P GRP+
Sbjct: 585 QQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPK 633
Score = 30.0 bits (66), Expect = 6.0
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 40 KAPGRDQPTPGDGEQPGAWP-TAPLAA--PRPSGLEPPGTPGPGPA------LPLGAASS 90
K PG PT Q G P T P PRPSG P G P P A +P A ++
Sbjct: 593 KPPGPAGPTR-QASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAA 651
Query: 91 PRNAPHVRGTRRSAGTRVVQTRKEEPLPPATSQ 123
PH + + + T + P P+ SQ
Sbjct: 652 AGGPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQ 684
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 40.8 bits (94), Expect = 0.003
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 18/129 (13%)
Query: 12 KMKVDELFLYWLSEASTQRMLQDCLRRIKAPGRDQ----PTPGD---GEQPGAWPTAPLA 64
K + EL + +++A ++ +D +PGR P+PG G Q P P A
Sbjct: 403 KQLIVELVVNKMAQALPRQRQRDA-----SPGRGSHGQTPSPGALPLGRQTSQQPAGPPA 457
Query: 65 APRPSGLEPPGTPGPGP---ALPLGAASSPRNAPHVRGTRRSAGTRVVQ---TRKEEPLP 118
RP P PGPGP PL P+ H+ G AG+ + Q + P
Sbjct: 458 QQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQ 517
Query: 119 PATSQSIPT 127
PA+ + PT
Sbjct: 518 PASQAAPPT 526
Score = 34.7 bits (78), Expect = 0.24
Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 19/109 (17%)
Query: 47 PTPGDGEQP---GAWPTAPLAAPRPSGLEPPGTPGP----------GPALPLGAASSP-- 91
PT G G Q P AP AA P+ P GP GPA P + + P
Sbjct: 525 PTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGG 584
Query: 92 --RNAPHVRGTRRSAGTRVVQTRKEEPL--PPATSQSIPTFYFPRGRPQ 136
R P + + TR P PP T Q P+ P GRP+
Sbjct: 585 QQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPK 633
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 40.8 bits (94), Expect = 0.003
Identities = 28/87 (32%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 41 APGRDQPTPG-DGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRG 99
APG P PG PG P AP P G+ PP + G P P ++P P G
Sbjct: 333 APGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPG 392
Query: 100 TRRSAGTRVVQTRKEEPLPPATSQSIP 126
A Q P PP S P
Sbjct: 393 VHPPAPGMHPQAPGVHPQPPGVHPSAP 419
Score = 36.2 bits (82), Expect = 0.084
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 41 APGRDQPTPGDGEQP-GAWPTAPLAAPRPSGLEP--PGTPGPGPALPLGAASSPRNAP 95
APG PG QP G P+AP P+P G+ P PG P P P+ P P
Sbjct: 397 APGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPGVHPPTPMPPMLRPPLPSEGP 454
Score = 31.6 bits (70), Expect = 2.1
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 42 PGRDQPTPGDGEQPGAWPTAPLAAPRPSGLEPPG----TPGPGPALPLGAASSPRNAPH 96
PG Q P PG P AP+ P SG+ PP P PG P P + H
Sbjct: 275 PGPPQLPP---PAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVH 330
Score = 31.2 bits (69), Expect = 2.7
Identities = 27/91 (29%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 41 APGRDQPTPG-DGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRG 99
A G P PG PG P AP P SG+ PP PG P P +P P G
Sbjct: 298 ASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPP-APGVHPPAPGVHPPAPGVHPPAPG 356
Query: 100 TRRSA-GTRVVQTRKEEPLPPATSQSIPTFY 129
A G + P P + P +
Sbjct: 357 VHPPAPGVHPPPSAGVHPQAPGVHPAAPAVH 387
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 40.0 bits (92), Expect = 0.006
Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 34/140 (24%)
Query: 23 LSEASTQRMLQDC-------LRRIKAPGRDQPTPGDGEQPGAWPTAPL--AAPRPSGLEP 73
L E S Q+ +D + ++ G P +G+ P +P+ A +G
Sbjct: 254 LEELSVQQETEDQNYGIFLEMMEARSRGHASPLAANGQSPSPGSQSPVVPAGAVSTGSSS 313
Query: 74 PGTPGPGPALPLGAAS-------------SPRNAPHVRGTRRSAGTRVVQTR-------- 112
PGTP P P LPL AA P P RRS +R+ T
Sbjct: 314 PGTPQPAPQLPLNAAPPSSVPPVPPSEALPPPACPSAPAPRRSIISRLFGTSPATEAAPP 373
Query: 113 KEEPLP----PATSQSIPTF 128
EP+P PAT QS+ F
Sbjct: 374 PPEPVPAAEGPATVQSVEDF 393
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 40.0 bits (92), Expect = 0.006
Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 19/136 (13%)
Query: 42 PGRDQP-TPGDGEQPGAWPTAPLAAPRPSG--LEPPGTPGPGPALPLGAASSPRNAPHVR 98
P QP TP Q + T P+ R S PPGTP PG ++P S P P R
Sbjct: 2173 PYSQQPQTPRPSTQTDLFVT-PVTNQRHSDPYAHPPGTPRPGISVPY---SQPPATPRPR 2228
Query: 99 ---GTRRSAGTRVVQTRKEEPLPPATSQSIPTFYFPRGRPQDSVN---------VDAVIS 146
G RS+ TR V ++P A P P RP D+ + + S
Sbjct: 2229 ISEGFTRSSMTRPVLMPNQDPFLQAAQNRGPALPGPLVRPPDTCSQTPRPPGPGLSDTFS 2288
Query: 147 KIESTFARFPHERATM 162
++ + AR P++++ M
Sbjct: 2289 RVSPSAARDPYDQSPM 2304
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 40.0 bits (92), Expect = 0.006
Identities = 39/133 (29%), Positives = 50/133 (37%), Gaps = 21/133 (15%)
Query: 2 PPGKVLQPVLKMKVDELFLYWLSEASTQRMLQD-----CLRRIKAPGRDQPTPGDGEQPG 56
PP +++ E+ +Y R+L+ RR +P R +P P P
Sbjct: 46 PPAPPAPGAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPP--PPP 103
Query: 57 AWPTAPLAAPRPSGLEPPGTPGP--GPALP-------LGAASSPRNAPHVRGTRRSAGTR 107
A P P AAP PP PGP G A P L S H RG R AG R
Sbjct: 104 APPRPPPAAP-----SPPAAPGPRGGGASPGARRSDFLQKTGSNSFTVHPRGLHRGAGAR 158
Query: 108 VVQTRKEEPLPPA 120
++ P P A
Sbjct: 159 LLSNGHSAPEPRA 171
Score = 30.8 bits (68), Expect = 3.5
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 52 GEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRGTRRSAGTRVVQT 111
G PG+ P L PP +PG A P AS P +A + SA T +
Sbjct: 179 GSPPGSGQWKPKVESGDPSLHPPPSPGTPSATP---ASPPASATPSQRQCVSAATSTNDS 235
Query: 112 RKEEPLPPATSQSIP 126
+ P P ++IP
Sbjct: 236 FEIRPAPKPVMETIP 250
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 40.0 bits (92), Expect = 0.006
Identities = 39/133 (29%), Positives = 50/133 (37%), Gaps = 21/133 (15%)
Query: 2 PPGKVLQPVLKMKVDELFLYWLSEASTQRMLQD-----CLRRIKAPGRDQPTPGDGEQPG 56
PP +++ E+ +Y R+L+ RR +P R +P P P
Sbjct: 46 PPAPPAPGAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPP--PPP 103
Query: 57 AWPTAPLAAPRPSGLEPPGTPGP--GPALP-------LGAASSPRNAPHVRGTRRSAGTR 107
A P P AAP PP PGP G A P L S H RG R AG R
Sbjct: 104 APPRPPPAAP-----SPPAAPGPRGGGASPGARRSDFLQKTGSNSFTVHPRGLHRGAGAR 158
Query: 108 VVQTRKEEPLPPA 120
++ P P A
Sbjct: 159 LLSNGHSAPEPRA 171
Score = 30.8 bits (68), Expect = 3.5
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 52 GEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRGTRRSAGTRVVQT 111
G PG+ P L PP +PG A P AS P +A + SA T +
Sbjct: 179 GSPPGSGQWKPKVESGDPSLHPPPSPGTPSATP---ASPPASATPSQRQCVSAATSTNDS 235
Query: 112 RKEEPLPPATSQSIP 126
+ P P ++IP
Sbjct: 236 FEIRPAPKPVMETIP 250
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 40.0 bits (92), Expect = 0.006
Identities = 27/63 (42%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 40 KAPGRDQPTPGDGEQPGAW-PTAPLAAPRPSGLEPPGTPG--PGPALPLGAASSPRNAPH 96
+APG P P PGAW P AP P P+G P TPG P P+ P S P AP
Sbjct: 181 QAPGAAPPVPWGTVPPGAWGPPAPY--PAPTGSYP--TPGLYPTPSNPFQVPSGPSGAPP 236
Query: 97 VRG 99
+ G
Sbjct: 237 MPG 239
Score = 31.2 bits (69), Expect = 2.7
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 42 PGRDQPTPGDGEQPGAWPTAPLAAPR-PSGLEPPGTPGPGPALPLGAASSP 91
P P+PG P P AP AAP P G PPG GP P S P
Sbjct: 164 PNMPYPSPGPYPAPPP-PQAPGAAPPVPWGTVPPGAWGPPAPYPAPTGSYP 213
Score = 30.4 bits (67), Expect = 4.6
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 49 PGDGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHV 97
P G PG P AP PS PPG P P P +P + P P++
Sbjct: 76 PPTGPPPG--PPAPFPPSGPS-CPPPGGPYPAPTVPGPGPTGPYPTPNM 121
Score = 30.0 bits (66), Expect = 6.0
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 18/94 (19%)
Query: 52 GEQPGAWPTAPLAAPRPSGL---EPPGTPGPGPALPL---GAASSPRNAPHVRGTRRSAG 105
G P A P+ P P+G+ PP P PGP P G + P P+ T G
Sbjct: 52 GLPPSATPSTVPFGPAPTGMYPSVPPTGPPPGPPAPFPPSGPSCPPPGGPYPAPTVPGPG 111
Query: 106 TRVVQTRKEEPLPPATSQSIPTFYFPR--GRPQD 137
P P + ++P PR G P D
Sbjct: 112 ----------PTGPYPTPNMPFPELPRPYGAPTD 135
Score = 30.0 bits (66), Expect = 6.0
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 47 PTPGDGEQPGAWPTAPLAAPRPSGLEP-PGTPGPGPALPLGAASSP 91
P PG P +P + + P P G P P PGPGP P + P
Sbjct: 80 PPPGP---PAPFPPSGPSCPPPGGPYPAPTVPGPGPTGPYPTPNMP 122
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 39.7 bits (91), Expect = 0.008
Identities = 38/132 (28%), Positives = 43/132 (32%), Gaps = 16/132 (12%)
Query: 42 PGRDQPTPGDGEQPGAWPT--------APLAAPRPSGLEPPGTPGPGPALPLGAASSPRN 93
PG P PG G PG P P P L PP T P P LP +P
Sbjct: 294 PGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPP 353
Query: 94 APHVRGTRRSAGTRVVQTRKEEPLPPATSQSIPTFYFPRGRPQDSVNVDAVISKIESTFA 153
APHV T + PP T P GRP D E A
Sbjct: 354 APHVNPAFFPPPTNSGMPTSDSRGPPPTD--------PYGRPPPYDRGDYGPPGREMDTA 405
Query: 154 RFPHERATMDDM 165
R P A +++
Sbjct: 406 RTPLSEAEFEEI 417
Score = 32.3 bits (72), Expect = 1.2
Identities = 33/100 (33%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 49 PGDGEQPG-AWPTAPLAAPRPSG-------LEPPGTPG-PGPALPLGAASSPRNAPHVRG 99
PG PG A P P P P+G L PPG PG PGP P P P RG
Sbjct: 212 PGGDRFPGPAGPGGP-PPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRG 270
Query: 100 TRRSAGT----RVVQTRKEEPLPPATSQSIPTFYFPRGRP 135
R + PLPP +P + P G P
Sbjct: 271 DRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPP 310
>gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo
sapiens]
Length = 847
Score = 39.3 bits (90), Expect = 0.010
Identities = 45/130 (34%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 24 SEASTQRMLQDCLRRIKAP------GRD-QPTPGDGEQPGAWPTAP-LAAPRPSGLEPPG 75
S + T +++Q L R A GRD QP G G + G PT P P P EPP
Sbjct: 633 SSSGTPKLIQRALLRGTALLASLGLGRDLQPPGGPGRERGESPTTPPTPTPAPCPTEPP- 691
Query: 76 TPGPGPALPLGAASSPRN-APHVRGTRRSAGTRVVQT--RKEEPL------PPATSQSIP 126
P P L SP AP + G R ++ R+EEP PP TS+S P
Sbjct: 692 -PSPLICFSLKTPDSPPTPAPLLLDLGIPVGQRSAKSPRREEEPRGGTVSPPPGTSRSAP 750
Query: 127 -TFYFPRGRP 135
T PR P
Sbjct: 751 GTPGTPRSPP 760
Score = 31.2 bits (69), Expect = 2.7
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 44 RDQPTPGDGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAP 95
R +P E+P +P P + PGTPG + PLG S PR +P
Sbjct: 723 RSAKSPRREEEPRGGTVSP---PPGTSRSAPGTPGTPRSPPLGLISRPRPSP 771
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 39.3 bits (90), Expect = 0.010
Identities = 29/84 (34%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 41 APGRDQPTPGDGEQPGAWPT-APLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRG 99
AP + P PG E P A P L P P PPGT GP P P P P G
Sbjct: 561 APPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGPVPPPPPPPPPPPGGPPDALG 620
Query: 100 TRRS------AGTRVVQTRKEEPL 117
R S + +QT+ PL
Sbjct: 621 RRDSELGPGVKAKKPIQTKFRMPL 644
Score = 36.2 bits (82), Expect = 0.084
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 43 GRDQPTPGDGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGA-ASSPRNAPHVRGT 100
G D PTPG + AP A P P PP P PG P A S+P AP + G+
Sbjct: 513 GGDAPTPGVPTGSPSPDLAPAAEPAPGAAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGS 571
Score = 31.2 bits (69), Expect = 2.7
Identities = 31/100 (31%), Positives = 36/100 (36%), Gaps = 22/100 (22%)
Query: 41 APGRDQPTPGDGEQPGAWPTA-PLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRG 99
AP P PG A P+A P A P P EPP P P LP P P G
Sbjct: 541 APPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEPP----PAPPLPGDLPPPPPPPPPPPG 596
Query: 100 TRRSAGTRVVQTRKEEPLPPATSQSIPTFYFPRGRPQDSV 139
T + P+PP P P G P D++
Sbjct: 597 T-------------DGPVPPPPPPPPP----PPGGPPDAL 619
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 38.9 bits (89), Expect = 0.013
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 18/127 (14%)
Query: 22 WLS-EASTQRMLQDCLRR---IKAPGRDQPTPGDGEQPGAWPTAPLAAPRPSGLEPPGTP 77
WL T+R+L+ L + P QP G + T+PL P GL P P
Sbjct: 510 WLCLNCQTKRLLEGSLGEPTPLPPPTSQQPPVGAPHRASG--TSPLKQKGPQGLGQPSGP 567
Query: 78 GPGPALPLGAASSP---RNAPHVRGTRRSAGTRV---VQTR------KEEPLPPATSQSI 125
P A PL +SP + +P + R S ++ VQ + K EP+P ++
Sbjct: 568 LPAKASPLSTKASPLPSKASPQAKPLRASEPSKTPSSVQEKKTRVPTKAEPMPKPPPETT 627
Query: 126 PTFYFPR 132
PT P+
Sbjct: 628 PTPATPK 634
Score = 32.3 bits (72), Expect = 1.2
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 45 DQPTPGDGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRG 99
D P P G PG P P P +PP P G LP A+ P V G
Sbjct: 13 DGPLPPGGAGPGPGP-----GPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPG 62
Score = 32.0 bits (71), Expect = 1.6
Identities = 32/107 (29%), Positives = 38/107 (35%), Gaps = 30/107 (28%)
Query: 42 PGRDQPTPGDGEQPGAW--PTAPL--------------AAPRPSGLEPPGTPGPGPALPL 85
PG P PG G PGA P+AP A P G P PGPGP
Sbjct: 18 PGGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPGPGPGPGP---- 73
Query: 86 GAASSPRNAPHVRGTRRSAGTRVVQTRKEEPLPPATSQSIPTFYFPR 132
G+ S + G +R+A P P S + P PR
Sbjct: 74 GSTSRRLDPKEPLGNQRAA----------SPTPKQASATTPGHESPR 110
Score = 31.2 bits (69), Expect = 2.7
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 23 LSEASTQRMLQDCLRRIKAPGRDQPTPGDGEQPGAWPTAPL-AAPRPSGLEPPGTPGPG- 80
L++AST +Q +A + QP P G + A A P+P G P P PG
Sbjct: 358 LTQASTLMSVQP-----EADTQGQPAPSKGTPKIVFNDASKEAGPKPLGSGPGPGPAPGA 412
Query: 81 ---PALPLGAASSPRNAPHVRGT 100
P +G S P P GT
Sbjct: 413 KTEPGARMGPGSGPGALPKTGGT 435
Score = 31.2 bits (69), Expect = 2.7
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 13/104 (12%)
Query: 54 QPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRGTRRSAGTRVV---- 109
Q + PT +AP S +P G P PGP+ G P P T S GT
Sbjct: 3800 QQQSQPTTRGSAPAAS--QPAGKPQPGPSTATG--PQPAGPPRAEQTNGSKGTAKAPQQG 3855
Query: 110 QTRKEEPLPPATSQSIPTFYFPRGRP-----QDSVNVDAVISKI 148
+ + +P P + P G P Q + ++V SKI
Sbjct: 3856 RAPQAQPAPGPGPAGVKAGARPGGTPGAPAGQPGADGESVFSKI 3899
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 38.5 bits (88), Expect = 0.017
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 42 PGRDQPTPGDGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLG--AASSPRNAP 95
P RD+P E PG P P A P+ P TPGP PA P G A SP P
Sbjct: 589 PTRDEPAESPSETPGPRPAGP-AGDEPAE-SPSETPGPRPAGPAGDEPAESPSETP 642
Score = 37.0 bits (84), Expect = 0.049
Identities = 29/83 (34%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 38 RIKAPGRDQPTPGDGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPL--GAASSPRNAP 95
R P D+P E PG P P A P+ P TPGP PA P A SP P
Sbjct: 545 RPAGPAGDEPAESPSETPGPRPAGP-AGDEPAE-SPSETPGPSPAGPTRDEPAESPSETP 602
Query: 96 HVRGTRRSAGTRVVQTRKEEPLP 118
R AG ++ E P P
Sbjct: 603 GPR-PAGPAGDEPAESPSETPGP 624
Score = 36.6 bits (83), Expect = 0.064
Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 38 RIKAPGRDQPTPGDGEQPGAWPTAPLAAPRPSGLEPPG-TPGPGPALPLGAASSPRNAPH 96
R P D+P E PG P P R E P TPGP PA P G P +P
Sbjct: 565 RPAGPAGDEPAESPSETPGPSPAGPT---RDEPAESPSETPGPRPAGPAG--DEPAESPS 619
Query: 97 VRGTRRSAGTRVVQTRKEEPLPPATSQSIPT 127
R AG + + P S + PT
Sbjct: 620 ETPGPRPAGPAGDEPAESPSETPGPSPAGPT 650
Score = 35.8 bits (81), Expect = 0.11
Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 43 GRDQPTPGD-GEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRGTR 101
G + TPG E PG P P A P+ P TPGP PA P G P +P
Sbjct: 509 GPKEGTPGSPSETPGPSPAGP-AGDEPAE-SPSETPGPRPAGPAG--DEPAESPSETPGP 564
Query: 102 RSAGTRVVQTRKEEPLPPATSQSIPTFYFPRGRPQDS 138
R AG + + P S + PT P P ++
Sbjct: 565 RPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSET 601
Score = 33.1 bits (74), Expect = 0.71
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 16/69 (23%)
Query: 42 PGRDQPTPGD------GEQPGAWPTAPLAAPRPSG-------LEPPGTPGPGPALPLG-- 86
PG TPG G++P P + PRP+G P TPGP PA P G
Sbjct: 515 PGSPSETPGPSPAGPAGDEPAESP-SETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDE 573
Query: 87 AASSPRNAP 95
A SP P
Sbjct: 574 PAESPSETP 582
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 37.7 bits (86), Expect = 0.029
Identities = 34/118 (28%), Positives = 42/118 (35%), Gaps = 15/118 (12%)
Query: 24 SEASTQRMLQDCLRRIKAPGRDQPTPGDGEQP-------GAWPTAPLAAPRPSGLE---- 72
S+ S R L I+AP P P P P P+A P GLE
Sbjct: 693 SQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTKPNSQGPPNPMALPSEHGLEQPSH 752
Query: 73 -PPGTPGPGPALPLGAASSPRNAPH--VRGTRRSAGTRVVQTRKEEPLP-PATSQSIP 126
PP TP P PLG + AP G +A + P+P P S+P
Sbjct: 753 TPPQTPTPPSTPPLGKQNPSLPAPQTLAGGNPETAQPHAGTLPRPRPVPKPRNRPSVP 810
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 37.7 bits (86), Expect = 0.029
Identities = 34/118 (28%), Positives = 42/118 (35%), Gaps = 15/118 (12%)
Query: 24 SEASTQRMLQDCLRRIKAPGRDQPTPGDGEQP-------GAWPTAPLAAPRPSGLE---- 72
S+ S R L I+AP P P P P P+A P GLE
Sbjct: 615 SQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTKPNSQGPPNPMALPSEHGLEQPSH 674
Query: 73 -PPGTPGPGPALPLGAASSPRNAPH--VRGTRRSAGTRVVQTRKEEPLP-PATSQSIP 126
PP TP P PLG + AP G +A + P+P P S+P
Sbjct: 675 TPPQTPTPPSTPPLGKQNPSLPAPQTLAGGNPETAQPHAGTLPRPRPVPKPRNRPSVP 732
>gi|186700625 Rab-like GTP-binding protein 1 isoform 2 [Homo
sapiens]
Length = 520
Score = 37.4 bits (85), Expect = 0.038
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 24/113 (21%)
Query: 23 LSEASTQRMLQDC-------LRRIKAPGRDQPTPGDGEQPGAWPTAPL--AAPRPSGLEP 73
L E S Q+ +D + ++ G P +G+ P +P+ A +G
Sbjct: 254 LEELSVQQETEDQNYGIFLEMMEARSRGHASPLAANGQSPSPGSQSPVVPAGAVSTGSSS 313
Query: 74 PGTPGPGPALPLGAASSPRNAPHVRGTRRSAGTRVVQTRKEEPLPPATSQSIP 126
PGTP P P LPL AA P + P V E LPP S P
Sbjct: 314 PGTPQPAPQLPLNAA-PPSSVPPV--------------PPSEALPPPACPSAP 351
>gi|95147356 mitogen-activated protein kinase 15 [Homo sapiens]
Length = 544
Score = 37.4 bits (85), Expect = 0.038
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 24 SEASTQRMLQDCLRRIKAPGRDQPTPGDGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPAL 83
+E + R ++ R+ AP G+GE+P P A A P L P G P+L
Sbjct: 399 AEHESPRAAKNVPRQNSAPLLQTALLGNGERP---PGAKEAPPLTLSLVKPSGRGAAPSL 455
Query: 84 PLGAASSPRNAPHVRGT-RRSAGTRVVQTRKEEP-LPP 119
AA+ N +RG R G RV ++ P LPP
Sbjct: 456 TSQAAAQVANQALIRGDWNRGGGVRVASVQQVPPRLPP 493
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 37.0 bits (84), Expect = 0.049
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 55 PGAWPTAPLAA-PRPSGLEPPGTPGPGPALPLGAASSPRNAPH--VRGTRRSAGTR--VV 109
P P PLA P PS +PP P P PA L + +S RGT + TR +
Sbjct: 773 PALPPPPPLAKFPPPSQPQPPPPPPPSPASLLKSLASVLEGQKYCYRGTGAAVSTRPGPL 832
Query: 110 QTRKEEPLPPATSQSI-PTFYFP--RGRPQDSVNVDAVISKIESTFAR 154
T + P PP+ + ++ PT P +G PQ S + + S +AR
Sbjct: 833 PTTQYSPGPPSGATALPPTSAAPSAQGSPQPSASSSSQFSTSGGPWAR 880
Score = 31.2 bits (69), Expect = 2.7
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 41 APGRDQPTPGDGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSP 91
+PG + + EQ G P PL P P PP P P P LP G A+SP
Sbjct: 224 SPGGKRRRGCNSEQTGLPPGLPLPPP-PLPPPPPPPPPPPPPLP-GLATSP 272
Score = 30.0 bits (66), Expect = 6.0
Identities = 35/105 (33%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 37 RRIKAPGRDQPTPGDGEQPGAWPTAPLAAPRPSG--LEPPGTPGPGPALPLGAASS---P 91
R+ AP Q P +P AP P G L P PGPGP P GA S P
Sbjct: 294 RKGSAPPERQEQRHSLPHPYPYP-APAYTAHPPGHRLVPAAPPGPGPR-PPGAESHGCLP 351
Query: 92 RNAPHVRGTRRSAGTRVVQTRKEEPL-PPATSQSIPTFYFPRGRP 135
P R S RV ++R + + P AT+ +P Y P P
Sbjct: 352 ATRPPGSDLRES---RVQRSRMDSSVSPAATTACVP--YAPSRPP 391
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,505,578
Number of Sequences: 37866
Number of extensions: 1390818
Number of successful extensions: 10375
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 523
Number of HSP's that attempted gapping in prelim test: 8280
Number of HSP's gapped (non-prelim): 2330
length of query: 575
length of database: 18,247,518
effective HSP length: 108
effective length of query: 467
effective length of database: 14,157,990
effective search space: 6611781330
effective search space used: 6611781330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.