Guide to the Human Genome
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Name: SCFD1 Sequence: fasta or formatted (575aa) NCBI GI: 33469978
Description:

vesicle transport-related protein isoform b

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [642aa] vesicle transport-related protein isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         39           2
 C cysteine            1.0          6           1
 D aspartate           7.0         40           2
 E glutamate           6.4         37           2
 F phenylalanine       4.0         23           2
 G glycine             4.5         26           3
 H histidine           1.7         10           2
 I isoleucine          5.0         29           2
 K lysine              7.0         40           2
 L leucine            11.1         64           3
 M methionine          3.1         18           1
 N asparagine          5.2         30           1
 P proline             4.3         25           1
 Q glutamine           4.7         27           2
 R arginine            4.5         26           1
 S serine              6.8         39           2
 T threonine           5.7         33           3
 V valine              6.6         38           2
 W tryptophan          0.5          3           1
 Y tyrosine            3.8         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vesicle transport-related protein isoform b 
SCFD1                 1.000   vesicle transport-related protein isoform a 
VPS45                 0.080   vacuolar protein sorting 45A 
STXBP2                0.045   syntaxin binding protein 2 isoform a 
STXBP2                0.044   syntaxin binding protein 2 isoform b 
STXBP1                0.035   syntaxin binding protein 1 isoform a 
STXBP1                0.035   syntaxin binding protein 1 isoform b 
STXBP3                0.033   syntaxin binding protein 3 
VPS33A                0.016   vacuolar protein sorting 33A 
DCTN1                 0.010   dynactin 1 isoform 4 
DCTN1                 0.010   dynactin 1 isoform 3 
DCTN1                 0.010   dynactin 1 isoform 2 
DCTN1                 0.010   dynactin 1 isoform 1 
LAMA3                 0.007   laminin alpha 3 subunit isoform 4 
LAMA3                 0.007   laminin alpha 3 subunit isoform 3 
LAMA3                 0.007   laminin alpha 3 subunit isoform 1 
LAMA3                 0.007   laminin alpha 3 subunit isoform 2 
ESYT2                 0.006   family with sequence similarity 62 (C2 domain contai...
HELLS                 0.006   helicase, lymphoid-specific 
PHACTR1               0.006   phosphatase and actin regulator 1 
GOLGA4                0.006   golgi autoantigen, golgin subfamily a, 4 
CIZ1                  0.006   CDKN1A interacting zinc finger protein 1 isoform 4 ...
CIZ1                  0.006   CDKN1A interacting zinc finger protein 1 isoform 3 ...
CIZ1                  0.006   CDKN1A interacting zinc finger protein 1 isoform 1 ...
CIZ1                  0.006   CDKN1A interacting zinc finger protein 1 isoform 2 ...
CIZ1                  0.006   CDKN1A interacting zinc finger protein 1 isoform 1 [...
KIF7                  0.006   kinesin family member 7 
MYH11                 0.005   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.005   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.005   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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