SCFD1 26176

Name: SCFD1	Sequence: fasta or formatted (642aa)		NCBI GI: 33469966
Description: vesicle transport-related protein isoform a		Referenced in: ER, Golgi, and the Secretory Pathway
Other entries for this name: alt prot [575aa] vesicle transport-related protein isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.9 51 6 C cysteine 0.9 6 1 D aspartate 6.7 43 2 E glutamate 6.2 40 2 F phenylalanine 3.9 25 2 G glycine 4.4 28 3 H histidine 1.7 11 2 I isoleucine 5.3 34 2 K lysine 6.9 44 2 L leucine 10.9 70 3 M methionine 3.1 20 1 N asparagine 5.1 33 1 P proline 4.4 28 1 Q glutamine 4.5 29 2 R arginine 4.8 31 1 S serine 6.7 43 2 T threonine 5.6 36 3 V valine 6.7 43 2 W tryptophan 0.6 4 1 Y tyrosine 3.6 23 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vesicle transport-related protein isoform a SCFD1 0.898 vesicle transport-related protein isoform b VPS45 0.077 vacuolar protein sorting 45A STXBP2 0.051 syntaxin binding protein 2 isoform a STXBP2 0.049 syntaxin binding protein 2 isoform b STXBP1 0.044 syntaxin binding protein 1 isoform a STXBP1 0.044 syntaxin binding protein 1 isoform b STXBP3 0.041 syntaxin binding protein 3 VPS33A 0.015 vacuolar protein sorting 33A DCTN1 0.009 dynactin 1 isoform 4 DCTN1 0.009 dynactin 1 isoform 3 DCTN1 0.009 dynactin 1 isoform 2 DCTN1 0.009 dynactin 1 isoform 1 LAMA3 0.006 laminin alpha 3 subunit isoform 4 LAMA3 0.006 laminin alpha 3 subunit isoform 3 LAMA3 0.006 laminin alpha 3 subunit isoform 1 LAMA3 0.006 laminin alpha 3 subunit isoform 2 ESYT2 0.006 family with sequence similarity 62 (C2 domain contai... HELLS 0.006 helicase, lymphoid-specific PHACTR1 0.006 phosphatase and actin regulator 1 GOLGA4 0.006 golgi autoantigen, golgin subfamily a, 4 CIZ1 0.006 CDKN1A interacting zinc finger protein 1 isoform 4 ... CIZ1 0.006 CDKN1A interacting zinc finger protein 1 isoform 3 ... CIZ1 0.006 CDKN1A interacting zinc finger protein 1 isoform 1 ... CIZ1 0.006 CDKN1A interacting zinc finger protein 1 isoform 2 ... CIZ1 0.006 CDKN1A interacting zinc finger protein 1 isoform 1 [... KIF7 0.006 kinesin family member 7 MYH11 0.005 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.005 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... MYH11 0.005 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.