| Name: VPS45 | Sequence: fasta or formatted (570aa) | NCBI GI: 18105063 | |
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Description: vacuolar protein sorting 45A
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Referenced in: ER, Golgi, and the Secretory Pathway
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 5.3 30 2 C cysteine 1.2 7 2 D aspartate 4.2 24 2 E glutamate 8.1 46 2 F phenylalanine 3.5 20 1 G glycine 4.7 27 2 H histidine 2.1 12 1 I isoleucine 5.4 31 2 K lysine 7.2 41 3 L leucine 11.4 65 3 M methionine 2.6 15 2 N asparagine 5.1 29 3 P proline 3.5 20 2 Q glutamine 4.7 27 2 R arginine 5.8 33 2 S serine 7.5 43 2 T threonine 4.7 27 2 V valine 8.2 47 2 W tryptophan 0.4 2 1 Y tyrosine 4.2 24 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 vacuolar protein sorting 45A STXBP2 0.095 syntaxin binding protein 2 isoform a STXBP2 0.091 syntaxin binding protein 2 isoform b SCFD1 0.088 vesicle transport-related protein isoform a STXBP3 0.085 syntaxin binding protein 3 STXBP1 0.082 syntaxin binding protein 1 isoform a SCFD1 0.081 vesicle transport-related protein isoform b STXBP1 0.079 syntaxin binding protein 1 isoform b VPS33A 0.038 vacuolar protein sorting 33A CEP290 0.010 centrosomal protein 290kDa CLIP1 0.010 restin isoform b CLIP1 0.010 restin isoform a ATF6 0.008 activating transcription factor 6 FAM81B 0.007 hypothetical protein LOC153643 MMRN1 0.007 multimerin 1 TEX13B 0.005 testis expressed 13B DST 0.005 dystonin isoform 1e precursor DST 0.005 dystonin isoform 1eB precursor EEA1 0.005 early endosome antigen 1, 162kD NDC80 0.005 kinetochore associated 2 VPS54 0.005 vacuolar protein sorting 54 isoform 2 VPS54 0.005 vacuolar protein sorting 54 isoform 1 GOLGB1 0.005 golgi autoantigen, golgin subfamily b, macrogolgin ... ANKRD20A4 0.005 ankyrin repeat domain 20 family, member A4 SGOL2 0.005 shugoshin-like 2 isoform 2 SGOL2 0.005 shugoshin-like 2 isoform 1 SGOL2 0.005 shugoshin-like 2 isoform 3 WASL 0.005 Wiskott-Aldrich syndrome gene-like protein MICALCL 0.005 MICAL C-terminal like FILIP1 0.005 filamin A interacting protein 1Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
