Search of human proteins with 33457308

Search of human proteins with 33457308

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|33457308 transmembrane emp24 protein transport domain
containing 4 [Homo sapiens]
         (227 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|33457308 transmembrane emp24 protein transport domain contain...   461   e-130
gi|39725636 transmembrane emp24 protein transport domain contain...   357   4e-99
gi|98986464 transmembrane emp24 domain-containing protein 10 pre...   112   3e-25
gi|32996709 transmembrane emp24 protein transport domain contain...    83   2e-16
gi|5803149 coated vesicle membrane protein [Homo sapiens]              82   4e-16
gi|6679189 transmembrane emp24 domain containing 3 [Homo sapiens]      67   1e-11
gi|5803040 interleukin 1 receptor-like 1 ligand precursor [Homo ...    47   1e-05
gi|21389573 transmembrane emp24 protein transport domain contain...    47   2e-05
gi|19923442 transmembrane emp24 protein transport domain contain...    45   5e-05
gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]         32   0.58 
gi|114155142 nuclear pore complex-associated protein TPR [Homo s...    31   0.76 
gi|31377705 centrosomal protein 97kDa [Homo sapiens]                   31   0.76 
gi|8051593 GA binding protein transcription factor, beta subunit...    30   1.3  
gi|8051595 GA binding protein transcription factor, beta subunit...    30   1.3  
gi|110349721 titin isoform novex-3 [Homo sapiens]                      29   2.9  
gi|4507651 tropomyosin 4 isoform 2 [Homo sapiens]                      29   2.9  
gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b...    29   2.9  
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a...    29   2.9  
gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b...    29   2.9  
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a...    29   2.9  
gi|51972208 leucine, glutamate and lysine rich 1 [Homo sapiens]        29   2.9  
gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Hom...    29   2.9  
gi|41393554 LUC7-like isoform b [Homo sapiens]                         29   2.9  
gi|8922297 LUC7-like isoform a [Homo sapiens]                          29   2.9  
gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Ho...    29   2.9  
gi|116812577 LUC7-like 2 [Homo sapiens]                                28   4.9  
gi|22907034 folliculin isoform 1 [Homo sapiens]                        28   6.4  
gi|4502901 clathrin, light polypeptide isoform a [Homo sapiens]        28   6.4  
gi|146260271 hypothetical protein LOC129881 [Homo sapiens]             28   6.4  
gi|148762940 DVL-binding protein DAPLE [Homo sapiens]                  28   6.4  

>gi|33457308 transmembrane emp24 protein transport domain containing
           4 [Homo sapiens]
          Length = 227

 Score =  461 bits (1187), Expect = e-130
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MAGVGAGPLRAMGRQALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQM 60
           MAGVGAGPLRAMGRQALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQM
Sbjct: 1   MAGVGAGPLRAMGRQALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQM 60

Query: 61  WDKQKEVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTR 120
           WDKQKEVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTR
Sbjct: 61  WDKQKEVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTR 120

Query: 121 MALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYR 180
           MALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYR
Sbjct: 121 MALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYR 180

Query: 181 EERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV 227
           EERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV
Sbjct: 181 EERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV 227


>gi|39725636 transmembrane emp24 protein transport domain containing
           9 [Homo sapiens]
          Length = 235

 Score =  357 bits (917), Expect = 4e-99
 Identities = 173/222 (77%), Positives = 197/222 (88%), Gaps = 2/222 (0%)

Query: 8   PLRAMGR--QALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQK 65
           P   +GR  + LLL+   AT    LYFHIGETEK+CFIEEIPDETMVIGNYRTQ++DKQ+
Sbjct: 14  PGTGLGRVMRTLLLVLWLATRGSALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYDKQR 73

Query: 66  EVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFA 125
           E + P+TPGLGM VEVKDP+ KV+L+RQYGSEGRFTFTSHTPG+HQICLHSNST+ +LFA
Sbjct: 74  EEYQPATPGLGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFA 133

Query: 126 GGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFR 185
           GG LRVHLDIQVGEHAN+Y EIAAKDKL+ELQLR RQL++QVEQIQKEQ+YQR+REERFR
Sbjct: 134 GGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFR 193

Query: 186 LTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV 227
            TSESTNQRVLWWSI QT+IL+  G+WQMRHLKSFFEAKKLV
Sbjct: 194 QTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235


>gi|98986464 transmembrane emp24 domain-containing protein 10
           precursor [Homo sapiens]
          Length = 219

 Score =  112 bits (279), Expect = 3e-25
 Identities = 78/233 (33%), Positives = 121/233 (51%), Gaps = 21/233 (9%)

Query: 1   MAGVGAGPLRAMGRQALLLLALCATGAQ---GLYFHIGETEKRCFIEEIPDETMVIGNYR 57
           M+G+   P R  G   L LL L   G +    + FH+    ++C  EEI  + +V G Y 
Sbjct: 1   MSGLSGPPARR-GPFPLALLLLFLLGPRLVLAISFHLPINSRKCLREEIHKDLLVTGAY- 58

Query: 58  TQMWDKQKEVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSN 117
            ++ D+          GL  H+++ D  G ++ S++  ++G+F FT+      ++C  S 
Sbjct: 59  -EISDQSG-----GAGGLRSHLKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESK 112

Query: 118 STRMALFAGGKLR---VHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQ 174
            T       G++    V LD++ G  A NY EIA  +KL  L++  R+L D  E I  + 
Sbjct: 113 GT-------GRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDF 165

Query: 175 DYQRYREERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV 227
            Y + REE  R T+ESTN RVL++SI     LI    WQ+ +L+ FF+AKKL+
Sbjct: 166 AYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218


>gi|32996709 transmembrane emp24 protein transport domain containing
           7 [Homo sapiens]
          Length = 224

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 24/214 (11%)

Query: 16  ALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGL 75
           ALLLL     GA  + F + +  K+CF E+I   T     ++                  
Sbjct: 23  ALLLLVPGPGGASEITFELPDNAKQCFYEDIAQGTKCTLEFQVIT--------------- 67

Query: 76  GMHVEV----KDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLRV 131
           G H +V    +DPDGKV+          FTFT+   G ++ C    S   + F      V
Sbjct: 68  GGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCF---SNEFSTFT--HKTV 122

Query: 132 HLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSEST 191
           + D QVGE    +P       LT+++     + + ++ +   Q + R RE + R  +E  
Sbjct: 123 YFDFQVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAEDL 182

Query: 192 NQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKK 225
           N RV +WS+ + +IL++  I Q+  LKSFF  K+
Sbjct: 183 NTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKR 216


>gi|5803149 coated vesicle membrane protein [Homo sapiens]
          Length = 201

 Score = 82.0 bits (201), Expect = 4e-16
 Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 19/214 (8%)

Query: 15  QALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPG 74
           + L+LLA       G +  I    + CF E +   T            K   +F  +  G
Sbjct: 6   ELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGT------------KMGLIFEVAEGG 53

Query: 75  -LGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLRVHL 133
            L + VE+  PD K +      S G++TF +H  G ++ C    S RM+      +   +
Sbjct: 54  FLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCF---SNRMSTMTPKIVMFTI 110

Query: 134 DIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQ 193
           DI       +    A ++KL E+     +L   +  ++ EQ+Y   RE   R  +++TN 
Sbjct: 111 DIGEAPKGQDMETEAHQNKLEEM---INELAVAMTAVKHEQEYMEVRERIHRAINDNTNS 167

Query: 194 RVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV 227
           RV+ WS  + ++L+   + Q+ +LK FFE +++V
Sbjct: 168 RVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201


>gi|6679189 transmembrane emp24 domain containing 3 [Homo sapiens]
          Length = 217

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 21/214 (9%)

Query: 17  LLLLALCATGAQG----LYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPST 72
           LLLL L     Q     L F + +  K+CF EE+        +Y         +V     
Sbjct: 12  LLLLLLLRRAEQPCGAELTFELPDNAKQCFHEEVEQGVKFSLDY---------QVITGGH 62

Query: 73  PGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLRVH 132
             +  +VE  DP G  +          FT+ +   G +Q C    S   + F+     V+
Sbjct: 63  YDVDCYVE--DPQGNTIYRETKKQYDSFTYRAEVKGVYQFCF---SNEFSTFS--HKTVY 115

Query: 133 LDIQVGEHANNYPEIAAK-DKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSEST 191
            D QVG+     P++  +   LT+++     + + ++ +   Q + R RE + R  +E  
Sbjct: 116 FDFQVGDEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDL 175

Query: 192 NQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKK 225
           N RV +WS+ +T+ L +    Q+  LKSFF  K+
Sbjct: 176 NSRVSYWSVGETIALFVVSFSQVLLLKSFFTEKR 209


>gi|5803040 interleukin 1 receptor-like 1 ligand precursor [Homo
           sapiens]
          Length = 227

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 40/198 (20%), Positives = 83/198 (41%), Gaps = 24/198 (12%)

Query: 39  KRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEG 98
           K+CF +  P    +   Y+           +    GL +   ++ P G +++S    ++G
Sbjct: 43  KQCFYQSAPANASLETEYQ-----------VIGGAGLDVDFTLESPQGVLLVSESRKADG 91

Query: 99  RFTFTSHTPGDHQICLHSN----STRMALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLT 154
             T      GD+++C  ++    S ++  F      +   +Q  E    + E    +++ 
Sbjct: 92  VHTVEPTEAGDYKLCFDNSFSTISEKLVFFE----LIFDSLQDDEEVEGWAEAVEPEEML 147

Query: 155 ELQLRARQLLDQVEQIQKEQDYQ-----RYREERFRLTSESTNQRVLWWSIAQTVILILT 209
           ++++   +   +  + + E+  Q     R  E R R   E   +RV +WS     +L+L 
Sbjct: 148 DVKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLV 207

Query: 210 GIWQMRHLKSFFEAKKLV 227
            + Q+  LK FF+ K+ V
Sbjct: 208 AVLQVCTLKRFFQDKRPV 225


>gi|21389573 transmembrane emp24 protein transport domain containing
           6 [Homo sapiens]
          Length = 240

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 17/147 (11%)

Query: 83  DPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLRVHLDIQVGEHAN 142
           +P G ++ + Q G  G+  F++   G +Q+CL +          G ++V+L+  V     
Sbjct: 90  NPQGFLIDTSQ-GVRGQINFSTQETGFYQLCLSNQHNHF-----GSVQVYLNFGVFYEG- 142

Query: 143 NYPEIAAKDK--------LTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQR 194
             PE   K K        L  ++   +++ + +  + +  ++ R R+       +S    
Sbjct: 143 --PETDHKQKERKQLNDTLDAIEDGTQKVQNNIFHMWRYYNFARMRKMADFFLIQSNYNY 200

Query: 195 VLWWSIAQTVILILTGIWQMRHLKSFF 221
           V WWS AQ++++IL+GI Q+  LK  F
Sbjct: 201 VNWWSTAQSLVIILSGILQLYFLKRLF 227


>gi|19923442 transmembrane emp24 protein transport domain containing
           5 [Homo sapiens]
          Length = 229

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 30/206 (14%)

Query: 32  FHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPDGKVVLS 91
           F +   +K CF + +P +  +   Y+                GL +   +  P+GK ++ 
Sbjct: 38  FTLPAGQKECFYQPMPLKASLEIEYQVL-----------DGAGLDIDFHLASPEGKTLVF 86

Query: 92  RQYGSEGRFTFTSHTPGDHQICLHSN----STRMALFAGGKLRVHLDIQVGEHANNYPEI 147
            Q  S+G  T  +   GD+  C  +     S ++  F      + LD  +GE A    + 
Sbjct: 87  EQRKSDGVHTVETEV-GDYMFCFDNTFSTISEKVIFF-----ELILD-NMGEQAQEQEDW 139

Query: 148 AAKDKLTE-LQLRARQLLDQVEQIQKE-------QDYQRYREERFRLTSESTNQRVLWWS 199
                 T+ L ++   +L+ +  I+         Q   R  E R R   ES   RV +WS
Sbjct: 140 KKYITGTDILDMKLEDILESINSIKSRLSKSGHIQILLRAFEARDRNIQESNFDRVNFWS 199

Query: 200 IAQTVILILTGIWQMRHLKSFFEAKK 225
           +   V++++    Q+  LKS FE K+
Sbjct: 200 MVNLVVMVVVSAIQVYMLKSLFEDKR 225


>gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]
          Length = 1317

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 17/56 (30%), Positives = 33/56 (58%)

Query: 147 IAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQ 202
           +A K+K  E +LR +Q ++  ++ Q+E+ + R +EE  RL   + N++   + I Q
Sbjct: 673 LAEKEKFEEERLREQQEIELQKKRQEEETFLRVQEELQRLKELNNNEKAEKFQIFQ 728


>gi|114155142 nuclear pore complex-associated protein TPR [Homo
           sapiens]
          Length = 2363

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 136 QVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQ 177
           ++GE      +     K+TELQL+    L ++EQ++K + +Q
Sbjct: 559 ELGETREREEQETTSSKITELQLKLESALTELEQLRKSRQHQ 600


>gi|31377705 centrosomal protein 97kDa [Homo sapiens]
          Length = 865

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 10/69 (14%)

Query: 138 GEHANNYPEIAAKDKLTELQLRARQ-----LLDQVEQIQKEQDYQRYR----EERFRLTS 188
           G +A NY    AKD   E++LR  Q     L D++ +++KE+D +R +    EE FR   
Sbjct: 571 GFYARNYNP-QAKDVRYEIRLRRMQEHIVCLTDEIRRLRKERDEERIKKFVQEEAFRFLW 629

Query: 189 ESTNQRVLW 197
                  +W
Sbjct: 630 NQVRSLQVW 638


>gi|8051593 GA binding protein transcription factor, beta subunit 1
           isoform beta 1 [Homo sapiens]
          Length = 395

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 19/125 (15%)

Query: 72  TPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLRV 131
           T G+G  + V  PDG+ VL+         T  S  P   + C+     R+          
Sbjct: 290 TSGIGQPIIVTMPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRV---------- 339

Query: 132 HLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSEST 191
                  E A      A + +L E    A++   Q+  ++KEQ+ + YR++   +T   T
Sbjct: 340 -------ESAEIEEREALQKQLDEANREAQKYRQQL--LKKEQEAEAYRQKLEAMTRLQT 390

Query: 192 NQRVL 196
           N+  +
Sbjct: 391 NKEAV 395


>gi|8051595 GA binding protein transcription factor, beta subunit 1
           isoform beta 2 [Homo sapiens]
          Length = 383

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 19/125 (15%)

Query: 72  TPGLGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLRV 131
           T G+G  + V  PDG+ VL+         T  S  P   + C+     R+          
Sbjct: 278 TSGIGQPIIVTMPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRV---------- 327

Query: 132 HLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSEST 191
                  E A      A + +L E    A++   Q+  ++KEQ+ + YR++   +T   T
Sbjct: 328 -------ESAEIEEREALQKQLDEANREAQKYRQQL--LKKEQEAEAYRQKLEAMTRLQT 378

Query: 192 NQRVL 196
           N+  +
Sbjct: 379 NKEAV 383


>gi|110349721 titin isoform novex-3 [Homo sapiens]
          Length = 5604

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 135  IQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFR 185
            + V E      E   KD L ELQL A   +D+ +  QKE++  R+ E  FR
Sbjct: 3887 VNVEESEEIASERIKKDDLRELQLSASTRIDEFKTEQKEEN-MRFFENSFR 3936


>gi|4507651 tropomyosin 4 isoform 2 [Homo sapiens]
          Length = 248

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 148 AAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRV 195
           A K K+  LQ +A +  D+ + +Q+E D +R R E+      + N+R+
Sbjct: 9   AVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRI 56


>gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b
           [Homo sapiens]
          Length = 293

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 148 AAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRV 195
           A K +LT+++ +   LL+ +E+I+KEQ  Q    +  +   E ++  V
Sbjct: 182 AIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSV 229


>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
           [Homo sapiens]
          Length = 306

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 148 AAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRV 195
           A K +LT+++ +   LL+ +E+I+KEQ  Q    +  +   E ++  V
Sbjct: 195 AIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSV 242


>gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b
           [Homo sapiens]
          Length = 293

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 148 AAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRV 195
           A K +LT+++ +   LL+ +E+I+KEQ  Q    +  +   E ++  V
Sbjct: 182 AIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSV 229


>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
           [Homo sapiens]
          Length = 306

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 148 AAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRV 195
           A K +LT+++ +   LL+ +E+I+KEQ  Q    +  +   E ++  V
Sbjct: 195 AIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSV 242


>gi|51972208 leucine, glutamate and lysine rich 1 [Homo sapiens]
          Length = 388

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 128 KLRVHLDIQVGEHANNYPEIAAK-DKLTELQLRARQLLDQVEQIQKEQDY-----QRYRE 181
           +L+  +D       N   E+  K D+L  + L   QL++Q  Q Q+E  +     +R  E
Sbjct: 206 RLKKEIDSNDSVSENLRKEMEQKSDELKRVMLAQTQLIEQFNQSQEENTFLQETVRRECE 265

Query: 182 ERFRLTSESTNQR 194
           ERF LT   +  R
Sbjct: 266 ERFELTEALSQAR 278


>gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Homo
           sapiens]
          Length = 293

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)

Query: 148 AAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTN 192
           A K +LT+++ +   LL+ +E+I+KEQ  Q    +  +   E ++
Sbjct: 182 AIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSS 226


>gi|41393554 LUC7-like isoform b [Homo sapiens]
          Length = 371

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 114 LHSNSTRMALFAGGKLRVHLDIQVGEHANNYPEIAA--KDKLTELQLRARQLLDQVEQIQ 171
           LH N  R+A   GGKL +   IQ+ E  +   +  A  ++K  + +LR R+  ++ E++ 
Sbjct: 199 LHDNDRRLADHFGGKLHLGF-IQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLS 257

Query: 172 KE-----QDYQRYR-EERFRLTSESTNQ 193
           +      +D +R R  +R R  S ST++
Sbjct: 258 RRSGSRTRDRRRSRSRDRRRRRSRSTSR 285


>gi|8922297 LUC7-like isoform a [Homo sapiens]
          Length = 325

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 114 LHSNSTRMALFAGGKLRVHLDIQVGEHANNYPEIAA--KDKLTELQLRARQLLDQVEQIQ 171
           LH N  R+A   GGKL +   IQ+ E  +   +  A  ++K  + +LR R+  ++ E++ 
Sbjct: 199 LHDNDRRLADHFGGKLHLGF-IQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLS 257

Query: 172 KE-----QDYQRYR-EERFRLTSESTNQ 193
           +      +D +R R  +R R  S ST++
Sbjct: 258 RRSGSRTRDRRRSRSRDRRRRRSRSTSR 285


>gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Homo
           sapiens]
          Length = 293

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)

Query: 148 AAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTN 192
           A K +LT+++ +   LL+ +E+I+KEQ  Q    +  +   E ++
Sbjct: 182 AIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSS 226


>gi|116812577 LUC7-like 2 [Homo sapiens]
          Length = 392

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 13/81 (16%)

Query: 114 LHSNSTRMALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKE 173
           LH N  R+A   GGKL  HL             I  ++KL EL+    +  ++  Q + +
Sbjct: 199 LHDNDRRLADHFGGKL--HLGF-----------IEIREKLEELKRVVAEKQEKRNQERLK 245

Query: 174 QDYQRYREERFRLTSESTNQR 194
           +  +R REER +L    ++ +
Sbjct: 246 RREEREREEREKLRRSRSHSK 266


>gi|22907034 folliculin isoform 1 [Homo sapiens]
          Length = 579

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 16/132 (12%)

Query: 90  LSRQYGSEGRFTFTSHTPGDHQ-ICLHSNSTRMALFAGGKLRVHLDIQVGEHANNYPEIA 148
           L ++ G+  R + TS T  D+   CLH++   +    G +L   L     E A     + 
Sbjct: 230 LHQRNGNAAR-SLTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLL----EGAPTEDTLV 284

Query: 149 AKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQTVILIL 208
             +KL +L+          E+ +   + +   EE+  +  EST  R L    A++  L  
Sbjct: 285 QMEKLADLE----------EESESWDNSEAEEEEKAPVLPESTEGRELTQGPAESSSLSG 334

Query: 209 TGIWQMRHLKSF 220
            G WQ R L  F
Sbjct: 335 CGSWQPRKLPVF 346


>gi|4502901 clathrin, light polypeptide isoform a [Homo sapiens]
          Length = 211

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 139 EHANNYPEIAAKDKLTELQLRARQLLD-------QVEQIQKEQDYQRYREERFRLTSEST 191
           E      E+ A  K+TE + R +   D       Q EQ++K +   R  EE F   S+  
Sbjct: 109 EQRKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEE 168

Query: 192 NQRVLWWSIAQ 202
                W  +AQ
Sbjct: 169 TPGTEWEKVAQ 179


>gi|146260271 hypothetical protein LOC129881 [Homo sapiens]
          Length = 552

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 149 AKDKLTELQLRARQL----LDQVEQIQKEQDYQRYREERFRLTSESTNQRV 195
           AK+K    Q +  +L    L +    +KE+++Q Y  E   L SE+TN+ +
Sbjct: 440 AKNKFNAKQAKQAELDYCRLTEALVAEKEKEFQDYAREVIELESETTNKYI 490


>gi|148762940 DVL-binding protein DAPLE [Homo sapiens]
          Length = 2028

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 134 DIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQK--------EQDYQRYREERFR 185
           D++    A +     A  KL++L+   RQL   +EQ ++        E++ QR +EE  R
Sbjct: 587 DVEKENKALHQTVTEANGKLSQLEFEKRQLHRDLEQAKEKGERAEKLERELQRLQEENGR 646

Query: 186 LTSESTN 192
           L  + T+
Sbjct: 647 LARKVTS 653


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,649,544
Number of Sequences: 37866
Number of extensions: 379812
Number of successful extensions: 1358
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1318
Number of HSP's gapped (non-prelim): 42
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.