Guide to the Human Genome
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Name: C16orf14 Sequence: fasta or formatted (160aa) NCBI GI: 33300670
Description:

hypothetical protein LOC84331

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         10           1
 C cysteine            1.2          2           1
 D aspartate           1.9          3           1
 E glutamate           6.2         10           2
 F phenylalanine       3.8          6           1
 G glycine             8.1         13           2
 H histidine           0.6          1           1
 I isoleucine          1.9          3           1
 K lysine              1.9          3           1
 L leucine             6.2         10           2
 M methionine          0.6          1           1
 N asparagine          3.1          5           1
 P proline            13.8         22           2
 Q glutamine          11.2         18           3
 R arginine            8.8         14           2
 S serine              6.2         10           2
 T threonine           6.9         11           1
 V valine              6.9         11           1
 W tryptophan          2.5          4           2
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84331 
LOC348262             0.150   hypothetical protein LOC348262 
LOC348262             0.150   hypothetical protein LOC348262 
HOXA3                 0.045   homeobox A3 isoform a 
HOXA3                 0.045   homeobox A3 isoform a 
COL18A1               0.038   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.038   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.038   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
RFX1                  0.035   regulatory factor X1 
KLF2                  0.032   Kruppel-like factor 
SCRIB                 0.032   scribble isoform b 
SCRIB                 0.032   scribble isoform a 
HCN2                  0.032   hyperpolarization activated cyclic nucleotide-gated...
ACBD4                 0.032   acyl-Coenzyme A binding domain containing 4 isoform...
ACBD4                 0.032   acyl-Coenzyme A binding domain containing 4 isoform ...
WBP11                 0.029   WW domain binding protein 11 
BOD1L                 0.029   biorientation of chromosomes in cell division 1-like...
DGKK                  0.029   diacylglycerol kinase kappa 
CEBPD                 0.029   CCAAT/enhancer binding protein delta 
LOC100290612          0.026   PREDICTED: hypothetical protein XP_002348127 
CDAN1                 0.026   codanin 1 
SYNJ1                 0.026   synaptojanin 1 isoform c 
LOC100133756          0.026   PREDICTED: hypothetical protein, partial 
TNRC18                0.026   trinucleotide repeat containing 18 
LMTK3                 0.026   lemur tyrosine kinase 3 
C9orf75               0.026   hypothetical protein LOC286262 isoform 2 
C9orf75               0.026   hypothetical protein LOC286262 isoform 1 
SHANK1                0.026   SH3 and multiple ankyrin repeat domains 1 
SPEG                  0.022   SPEG complex locus 
PPP1R3G               0.022   protein phosphatase 1, regulatory (inhibitor) subun...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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