Guide to the Human Genome
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Name: LOC348262 Sequence: fasta or formatted (97aa) NCBI GI: 148229977
Description:

hypothetical protein LOC348262

Not currently referenced in the text

Other entries for this name:
alt mRNA {97aa} hypothetical protein LOC348262
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          3           1
 C cysteine            0.0          0           0
 D aspartate           4.1          4           1
 E glutamate           9.3          9           2
 F phenylalanine       3.1          3           1
 G glycine             6.2          6           2
 H histidine           1.0          1           1
 I isoleucine          3.1          3           1
 K lysine              7.2          7           2
 L leucine             5.2          5           1
 M methionine          1.0          1           1
 N asparagine          3.1          3           1
 P proline             9.3          9           2
 Q glutamine           3.1          3           1
 R arginine            9.3          9           2
 S serine             13.4         13           3
 T threonine           5.2          5           1
 V valine              9.3          9           2
 W tryptophan          1.0          1           1
 Y tyrosine            3.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC348262 
LOC348262             1.000   hypothetical protein LOC348262 
C16orf14              0.273   hypothetical protein LOC84331 
BZRAP1                0.023   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.023   peripheral benzodiazepine receptor-associated prote...
NES                   0.017   nestin 
DNAJC2                0.017   DnaJ (Hsp40) homolog, subfamily C, member 2 isoform ...
DNAJC2                0.017   DnaJ (Hsp40) homolog, subfamily C, member 2 isoform...
TMPO                  0.017   thymopoietin isoform alpha 
KIAA1543              0.012   NEZHA isoform 2 
KIAA1543              0.012   NEZHA isoform 1 
GTF2I                 0.012   general transcription factor II, i isoform 3 
GTF2I                 0.012   general transcription factor II, i isoform 2 
GTF2I                 0.012   general transcription factor II, i isoform 1 
GTF2I                 0.012   general transcription factor II, i isoform 4 
BRAF                  0.006   B-Raf 
MYH10                 0.006   myosin, heavy polypeptide 10, non-muscle 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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