HPS1 26070

Name: HPS1	Sequence: fasta or formatted (324aa)		NCBI GI: 33286414
Description: Hermansky-Pudlak syndrome 1 protein isoform c		Referenced in: Lysosomes and Related Organelles
Other entries for this name: alt prot [700aa] Hermansky-Pudlak syndrome 1 protein isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.8 22 1 C cysteine 1.9 6 1 D aspartate 4.3 14 2 E glutamate 11.1 36 4 F phenylalanine 4.6 15 1 G glycine 5.2 17 2 H histidine 3.4 11 1 I isoleucine 3.4 11 2 K lysine 2.5 8 1 L leucine 13.9 45 2 M methionine 0.9 3 1 N asparagine 2.5 8 2 P proline 5.2 17 2 Q glutamine 4.9 16 2 R arginine 5.2 17 2 S serine 9.9 32 2 T threonine 5.2 17 1 V valine 4.9 16 1 W tryptophan 1.2 4 1 Y tyrosine 2.8 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Hermansky-Pudlak syndrome 1 protein isoform c HPS1 0.965 Hermansky-Pudlak syndrome 1 protein isoform a HEYL 0.018 hairy/enhancer-of-split related with YRPW motif-like ... FAM104A 0.016 hypothetical protein LOC84923 isoform 2 LCP2 0.011 lymphocyte cytosolic protein 2 LOC401097 0.011 PREDICTED: hypothetical protein LOC401097 0.011 PREDICTED: hypothetical protein TRIM28 0.011 tripartite motif-containing 28 protein SCARF1 0.010 scavenger receptor class F, member 1 isoform 1 precu... SCARF1 0.010 scavenger receptor class F, member 1 isoform 5 prec... MAP3K6 0.010 mitogen-activated protein kinase kinase kinase 6 [Ho... LOC729966 0.008 PREDICTED: similar to hCG2001482 DUSP27 0.008 dual specificity phosphatase 27 RP1L1 0.008 retinitis pigmentosa 1-like 1 MTFMT 0.008 mitochondrial methionyl-tRNA formyltransferase prec... SLC27A3 0.008 solute carrier family 27 member 3 CTAGE1 0.008 cutaneous T-cell lymphoma-associated antigen 1 isofo... MUC5AC 0.006 mucin 5AC LOC645177 0.006 PREDICTED: hypothetical protein LOC645177 0.006 PREDICTED: hypothetical protein LOC645177 0.006 PREDICTED: hypothetical protein MUC5B 0.006 mucin 5, subtype B, tracheobronchial ARID4B 0.006 AT rich interactive domain 4B isoform 2 ARID4B 0.006 AT rich interactive domain 4B isoform 1 RREB1 0.006 ras responsive element binding protein 1 isoform 2 [... RREB1 0.006 ras responsive element binding protein 1 isoform 1 [... ZFP36L2 0.006 zinc finger protein 36, C3H type-like 2 AP1G1 0.006 adaptor-related protein complex 1, gamma 1 subunit i... AP1G1 0.006 adaptor-related protein complex 1, gamma 1 subunit i... CEP350 0.006 centrosome-associated protein 350 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.