Guide to the Human Genome
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Name: LOC645177 Sequence: fasta or formatted (501aa) NCBI GI: 169204626
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {501aa} PREDICTED: hypothetical protein
alt mRNA {501aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         26           2
 C cysteine            2.0         10           1
 D aspartate           5.4         27           2
 E glutamate           9.4         47           3
 F phenylalanine       3.4         17           2
 G glycine             3.0         15           2
 H histidine           2.0         10           2
 I isoleucine          7.0         35           2
 K lysine              8.0         40           2
 L leucine             8.8         44           2
 M methionine          2.6         13           2
 N asparagine          5.4         27           2
 P proline             3.0         15           1
 Q glutamine           5.0         25           2
 R arginine            4.6         23           1
 S serine             11.8         59           3
 T threonine           6.2         31           2
 V valine              4.4         22           2
 W tryptophan          1.0          5           1
 Y tyrosine            2.0         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC645177             1.000   PREDICTED: hypothetical protein 
LOC645177             1.000   PREDICTED: hypothetical protein 
CCDC155               0.103   coiled-coil domain containing 155 
KIF20B                0.025   M-phase phosphoprotein 1 
CCDC88A               0.020   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.020   coiled-coil domain containing 88A isoform 1 
PLEC1                 0.020   plectin 1 isoform 11 
PLEC1                 0.020   plectin 1 isoform 10 
PLEC1                 0.020   plectin 1 isoform 8 
PLEC1                 0.020   plectin 1 isoform 7 
PLEC1                 0.020   plectin 1 isoform 6 
PLEC1                 0.020   plectin 1 isoform 3 
PLEC1                 0.020   plectin 1 isoform 2 
PLEC1                 0.020   plectin 1 isoform 1 
MYH6                  0.020   myosin heavy chain 6 
MYH15                 0.019   myosin, heavy polypeptide 15 
ERC1                  0.018   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.018   RAB6-interacting protein 2 isoform delta 
MYH3                  0.018   myosin, heavy chain 3, skeletal muscle, embryonic [H...
KTN1                  0.018   kinectin 1 isoform b 
KTN1                  0.018   kinectin 1 isoform c 
FYCO1                 0.018   FYVE and coiled-coil domain containing 1 
MYH13                 0.017   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH7                  0.017   myosin, heavy chain 7, cardiac muscle, beta 
CROCC                 0.017   ciliary rootlet coiled-coil 
MYH11                 0.017   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.017   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.017   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.017   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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