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Search of human proteins with 122939165
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122939165 NudC domain containing 3 [Homo sapiens]
(361 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122939165 NudC domain containing 3 [Homo sapiens] 727 0.0
gi|5729953 nuclear distribution gene C homolog [Homo sapiens] 135 7e-32
gi|12711676 UPF3 regulator of nonsense transcripts homolog A iso... 39 0.006
gi|18375525 UPF3 regulator of nonsense transcripts homolog A iso... 39 0.006
gi|205277396 dynactin 1 isoform 4 [Homo sapiens] 39 0.007
gi|205277392 dynactin 1 isoform 3 [Homo sapiens] 39 0.007
gi|118600967 shroom family member 4 [Homo sapiens] 38 0.016
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 37 0.021
gi|41872673 NIMA-related kinase 1 [Homo sapiens] 37 0.027
gi|74272280 aryl hydrocarbon receptor interacting protein-like 1... 37 0.027
gi|74272278 aryl hydrocarbon receptor interacting protein-like 1... 37 0.027
gi|74272276 aryl hydrocarbon receptor interacting protein-like 1... 37 0.027
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 37 0.036
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 37 0.036
gi|154354979 myosin X [Homo sapiens] 37 0.036
gi|189571679 NudC domain containing 1 isoform 2 [Homo sapiens] 37 0.036
gi|189571677 NudC domain containing 1 isoform 1 [Homo sapiens] 37 0.036
gi|21687129 NudC domain containing 2 [Homo sapiens] 37 0.036
gi|13259508 dynactin 1 isoform 2 [Homo sapiens] 36 0.047
gi|13259510 dynactin 1 isoform 1 [Homo sapiens] 36 0.047
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 36 0.061
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 36 0.061
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 36 0.061
gi|30795231 brain abundant, membrane attached signal protein 1 [... 35 0.080
gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens] 35 0.14
gi|118601081 heterogeneous nuclear ribonucleoprotein U-like 2 [H... 35 0.14
gi|126722969 centromere protein T [Homo sapiens] 34 0.18
gi|21264355 SWI/SNF-related matrix-associated actin-dependent re... 34 0.18
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 34 0.23
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 34 0.23
>gi|122939165 NudC domain containing 3 [Homo sapiens]
Length = 361
Score = 727 bits (1876), Expect = 0.0
Identities = 361/361 (100%), Positives = 361/361 (100%)
Query: 1 METGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA 60
METGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA
Sbjct: 1 METGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQA 60
Query: 61 LVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS 120
LVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS
Sbjct: 61 LVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS 120
Query: 121 TTELDGHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQKNPD 180
TTELDGHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQKNPD
Sbjct: 121 TTELDGHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQKNPD 180
Query: 181 SYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEG 240
SYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEG
Sbjct: 181 SYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEG 240
Query: 241 KLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATVDEE 300
KLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATVDEE
Sbjct: 241 KLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATVDEE 300
Query: 301 EQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPGAVQ 360
EQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPGAVQ
Sbjct: 301 EQAVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPGAVQ 360
Query: 361 F 361
F
Sbjct: 361 F 361
>gi|5729953 nuclear distribution gene C homolog [Homo sapiens]
Length = 331
Score = 135 bits (339), Expect = 7e-32
Identities = 94/334 (28%), Positives = 166/334 (49%), Gaps = 27/334 (8%)
Query: 7 ELYDQALLGILQ-HVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQALVLQV 65
E +D LL + Q H G VQ+ + F FL RKTDF+ +G G A+ L+ Q
Sbjct: 8 ERFDGMLLAMAQQHEGGVQELVNTFFSFLRRKTDFF---------IGGEEGMAEKLITQT 58
Query: 66 FKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDSTTELD 125
F + +A++ ++R E + R K E A+ A +E +I T+
Sbjct: 59 FSHHNQLAQKTRREKRARQEAERREKAERAARLAKEAKSETSGP-------QIKELTD-- 109
Query: 126 GHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQKNPDSYNGA 185
+E E++Q K+ A + G++ + E +++ + P+ NGA
Sbjct: 110 --EEAERLQLEIDQKKDAENHEAQLKNGSLDSPGKQDTEEDEEEDEKDKGKLKPNLGNGA 167
Query: 186 VRENYTWSQDYTDLEVRVPVPKHV-VKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTH 244
NY W+Q ++L++ VP + +KGK + V + +RV + G+ +++G+L +
Sbjct: 168 DLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGL---KGQPAIIDGELYN 224
Query: 245 KINTESSLWSLEPGKCVLVNLSKVGEY-WWNAILEGEEPIDIDKINKERS-MATVDEEEQ 302
++ E S W +E GK V V+L K+ + WW+ ++ + I+ KIN E S ++ +D E +
Sbjct: 225 EVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETR 284
Query: 303 AVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWD 336
++++++ +D QK G P S E K E+LKK D
Sbjct: 285 SMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMD 318
>gi|12711676 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3p [Homo sapiens]
Length = 476
Score = 39.3 bits (90), Expect = 0.006
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 74 RQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDSTTELDGHQE--VE 131
R++ EK+R EEK RR+EEE K +K + +E+ I + + +E E
Sbjct: 241 RRELEKKRLREEEKRRRREEERCKKKETDKQKK----IAEKEVRIKLLKKPEKGEEPTTE 296
Query: 132 KVQPPGPVKEMAHGSQEAEAPGAVA------GAAEVPRE 164
K + G + G QE+ APGAV G+ E P+E
Sbjct: 297 KPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQE 335
>gi|18375525 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3pdelta [Homo sapiens]
Length = 443
Score = 39.3 bits (90), Expect = 0.006
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 74 RQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDSTTELDGHQE--VE 131
R++ EK+R EEK RR+EEE K +K + +E+ I + + +E E
Sbjct: 208 RRELEKKRLREEEKRRRREEERCKKKETDKQKK----IAEKEVRIKLLKKPEKGEEPTTE 263
Query: 132 KVQPPGPVKEMAHGSQEAEAPGAVA------GAAEVPRE 164
K + G + G QE+ APGAV G+ E P+E
Sbjct: 264 KPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQE 302
>gi|205277396 dynactin 1 isoform 4 [Homo sapiens]
Length = 1139
Score = 38.9 bits (89), Expect = 0.007
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 67 KTFDHMARQDDEK------RRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS 120
K D A+ DE+ R +E + +R+KE+E +T+ A A+ + + ++ E+
Sbjct: 844 KKLDSAAKDADERIEKVQTRLEETQALLRKKEKEFEETMDALQADIDQLEA--EKAELKQ 901
Query: 121 TTELDGHQEVEKVQPPGP------VKEMAHGSQEAEAPGAVAGAAEVPREPPILPRI 171
+ +E ++ P P V +A G+ +APG+V G V P +L +I
Sbjct: 902 RLNSQSKRTIEGLRGPPPSGIATLVSGIAGGAIPGQAPGSVPGPGLVKDSPLLLQQI 958
>gi|205277392 dynactin 1 isoform 3 [Homo sapiens]
Length = 1253
Score = 38.9 bits (89), Expect = 0.007
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 67 KTFDHMARQDDEK------RRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS 120
K D A+ DE+ R +E + +R+KE+E +T+ A A+ + + ++ E+
Sbjct: 958 KKLDSAAKDADERIEKVQTRLEETQALLRKKEKEFEETMDALQADIDQLEA--EKAELKQ 1015
Query: 121 TTELDGHQEVEKVQPPGP------VKEMAHGSQEAEAPGAVAGAAEVPREPPILPRI 171
+ +E ++ P P V +A G+ +APG+V G V P +L +I
Sbjct: 1016 RLNSQSKRTIEGLRGPPPSGIATLVSGIAGGAIPGQAPGSVPGPGLVKDSPLLLQQI 1072
>gi|118600967 shroom family member 4 [Homo sapiens]
Length = 1493
Score = 37.7 bits (86), Expect = 0.016
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 74 RQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDSTTELDGHQEVEKV 133
+Q +K+++E EE+ +EEEE + A E+E +P E + L+ + +E+
Sbjct: 1124 QQQQQKQQEEEEEEEEEEEEEEEEEEEEAEEEEEELPPQYFSSETSGSCALNPEEVLEQP 1183
Query: 134 QPP--GPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQ-FQKNPDSYNG 184
QP G ++ GSQ A PPI + Q Q P Y G
Sbjct: 1184 QPLSFGHLEGSRQGSQSVPAEQESFALHSSDFLPPIRGHLGSQPEQAQPPCYYG 1237
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 37.4 bits (85), Expect = 0.021
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Query: 73 ARQDDEKRRQELEEKIRRKEEEEAKT-----VSAAAAEKEPVP-VPVQEIEIDSTTELD- 125
AR DD + +E +E+ E+ +A + +A EKE +P +E+ + T LD
Sbjct: 1403 ARLDDHEEEEEEDEEPSHNEDHDADDEDDSHMESAEVEKEELPRESFKEVLENQETFLDL 1462
Query: 126 ----GHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQKNPDS 181
GH E + G + S+ E G E EPP + Q+Q QKN
Sbjct: 1463 NVQPGHSNPEVLMDCGVDLTASCNSEPKELAGDPEAVPESDEEPPPGEQAQKQDQKNSKE 1522
Query: 182 YNGAVRE 188
+ +E
Sbjct: 1523 VDTEFKE 1529
Score = 32.3 bits (72), Expect = 0.68
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 67 KTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQE-------IEID 119
K D + + ++E+ +E EE+ +EEE + EK+P QE E +
Sbjct: 1342 KPEDDLIKPEEEEEEEE-EEEEEEEEEEGEEEEGGGNVEKDPDGAKSQEKEEPEISTEKE 1400
Query: 120 STTELDGHQEVEK--VQPPGPVKEMAHGSQEAEAPGAVAGAAEVPRE 164
+ LD H+E E+ +P A ++ A E+PRE
Sbjct: 1401 DSARLDDHEEEEEEDEEPSHNEDHDADDEDDSHMESAEVEKEELPRE 1447
>gi|41872673 NIMA-related kinase 1 [Homo sapiens]
Length = 1258
Score = 37.0 bits (84), Expect = 0.027
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 70 DHMARQDDEKRRQELEEKIR------RKEEEEAKTVSAAAAEKE---PVPVPVQEIEID- 119
+++ Q+DEK +Q L + KE E+ K+VS+ + E + +P+ E+ +D
Sbjct: 718 ENLKAQEDEKGKQNLSDTFEINVHEDAKEHEKEKSVSSDRKKWEAGGQLVIPLDELTLDT 777
Query: 120 --STTELDGHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQK 177
STTE EV K+ P G + A G ++ + G AE+ + +L + +
Sbjct: 778 SFSTTERHTVGEVIKLGPNGSPRR-AWGKSPTDSVLKILGEAELQLQTELLENTTIRSEI 836
Query: 178 NPD 180
+P+
Sbjct: 837 SPE 839
>gi|74272280 aryl hydrocarbon receptor interacting protein-like 1
isoform 3 [Homo sapiens]
Length = 324
Score = 37.0 bits (84), Expect = 0.027
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 11/139 (7%)
Query: 34 LYRKTDFYRLLRHPSDRMGFPPGAAQALVLQV---FKTFDHMARQDDEKRRQELEEKIRR 90
L +K ++Y +L H SD + PG +A ++ + ++ + D ++ ELE +++
Sbjct: 180 LLKKEEYYEVLEHTSDILRHHPGIVKAYYVRARAHAEVWNEAEAKADLQKVLELEPSMQK 239
Query: 91 KEEEEAKTVSAAAAEKEPVPVPVQEIEIDSTTELDGHQEVEKVQPPGPVKEMAHGSQEAE 150
E + + AEK+ +E + L +P P + A S E
Sbjct: 240 AVRRELRLLENRMAEKQ------EEERLRCRNMLSQGATQPPAEP--PTEPPAQSSTEPP 291
Query: 151 APGAVAGAAEVPREPPILP 169
A A +AE+ PP P
Sbjct: 292 AEPPTAPSAELSAGPPAEP 310
>gi|74272278 aryl hydrocarbon receptor interacting protein-like 1
isoform 2 [Homo sapiens]
Length = 321
Score = 37.0 bits (84), Expect = 0.027
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 11/139 (7%)
Query: 34 LYRKTDFYRLLRHPSDRMGFPPGAAQALVLQV---FKTFDHMARQDDEKRRQELEEKIRR 90
L +K ++Y +L H SD + PG +A ++ + ++ + D ++ ELE +++
Sbjct: 177 LLKKEEYYEVLEHTSDILRHHPGIVKAYYVRARAHAEVWNEAEAKADLQKVLELEPSMQK 236
Query: 91 KEEEEAKTVSAAAAEKEPVPVPVQEIEIDSTTELDGHQEVEKVQPPGPVKEMAHGSQEAE 150
E + + AEK+ +E + L +P P + A S E
Sbjct: 237 AVRRELRLLENRMAEKQ------EEERLRCRNMLSQGATQPPAEP--PTEPPAQSSTEPP 288
Query: 151 APGAVAGAAEVPREPPILP 169
A A +AE+ PP P
Sbjct: 289 AEPPTAPSAELSAGPPAEP 307
>gi|74272276 aryl hydrocarbon receptor interacting protein-like 1
isoform 1 [Homo sapiens]
Length = 384
Score = 37.0 bits (84), Expect = 0.027
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 11/139 (7%)
Query: 34 LYRKTDFYRLLRHPSDRMGFPPGAAQALVLQV---FKTFDHMARQDDEKRRQELEEKIRR 90
L +K ++Y +L H SD + PG +A ++ + ++ + D ++ ELE +++
Sbjct: 240 LLKKEEYYEVLEHTSDILRHHPGIVKAYYVRARAHAEVWNEAEAKADLQKVLELEPSMQK 299
Query: 91 KEEEEAKTVSAAAAEKEPVPVPVQEIEIDSTTELDGHQEVEKVQPPGPVKEMAHGSQEAE 150
E + + AEK+ +E + L +P P + A S E
Sbjct: 300 AVRRELRLLENRMAEKQ------EEERLRCRNMLSQGATQPPAEP--PTEPPAQSSTEPP 351
Query: 151 APGAVAGAAEVPREPPILP 169
A A +AE+ PP P
Sbjct: 352 AEPPTAPSAELSAGPPAEP 370
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 36.6 bits (83), Expect = 0.036
Identities = 55/255 (21%), Positives = 96/255 (37%), Gaps = 27/255 (10%)
Query: 81 RQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEI-EIDSTTELDGHQEVEKVQPPGPV 139
++E +E KEEE AA+K PV E+ E + E + QE E+ + G
Sbjct: 485 KEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAK 544
Query: 140 KEMA-------HGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQKNPDSYNGAVRENYTW 192
+ A GS E E G E E +E+ + E
Sbjct: 545 SDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVAD 604
Query: 193 SQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSL 252
++ + + PVPK V+ K S + + +EE G+ + + + K +
Sbjct: 605 AKVEKPEKAKSPVPKSPVEEK------GKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPK 658
Query: 253 WSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATV------DEEEQAVLD 306
+E V+ S V E + + P+ + + +S A V +EEE+ V +
Sbjct: 659 SPVEEKGKSPVSKSPVEE-------KAKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKE 711
Query: 307 RLTFDYHQKLQGKPQ 321
+ +K + KP+
Sbjct: 712 APKEEKVEKKEEKPK 726
Score = 30.0 bits (66), Expect = 3.4
Identities = 60/277 (21%), Positives = 110/277 (39%), Gaps = 31/277 (11%)
Query: 73 ARQDDEKRRQELEEKIRRKEE----------EEAKTV--SAAAAEKEPVPVPVQEIEIDS 120
A +EK+ +E E++ KEE E+AK+ + EK PVP +E
Sbjct: 580 AEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKG 639
Query: 121 TTELDGHQEVEKVQ---PPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQ----- 172
+ + EK + P PV+E S +++P + VP+ P + +
Sbjct: 640 KSPVPKSPVEEKGKSPVPKSPVEEKGK-SPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGK 698
Query: 173 -EQFQKNPDSYNGAVRENYTWSQDY--TDLEVRVPVPKHVVKGKQVSVALSSSSIRVAML 229
EQ ++ A +E ++ D+ + V + V + S++V +
Sbjct: 699 GEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLE 758
Query: 230 EENGE--RVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDK 287
+E E + L + K K E S E G S+ + N +EG+E ++++
Sbjct: 759 KETKEEGKPLQQEKEKEKAGGEGG--SEEEGSDKGAKGSRKEDIAVNGEVEGKE--EVEQ 814
Query: 288 INKERSMATVDEEEQAVLDRLTFDYHQKLQGKPQSHE 324
KE+ +EE+ V + L + +G +S E
Sbjct: 815 ETKEKGSGR-EEEKGVVTNGLDLSPADEKKGGDKSEE 850
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 36.6 bits (83), Expect = 0.036
Identities = 55/255 (21%), Positives = 96/255 (37%), Gaps = 27/255 (10%)
Query: 81 RQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEI-EIDSTTELDGHQEVEKVQPPGPV 139
++E +E KEEE AA+K PV E+ E + E + QE E+ + G
Sbjct: 109 KEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAK 168
Query: 140 KEMA-------HGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQKNPDSYNGAVRENYTW 192
+ A GS E E G E E +E+ + E
Sbjct: 169 SDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVAD 228
Query: 193 SQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSL 252
++ + + PVPK V+ K S + + +EE G+ + + + K +
Sbjct: 229 AKVEKPEKAKSPVPKSPVEEK------GKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPK 282
Query: 253 WSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATV------DEEEQAVLD 306
+E V+ S V E + + P+ + + +S A V +EEE+ V +
Sbjct: 283 SPVEEKGKSPVSKSPVEE-------KAKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKE 335
Query: 307 RLTFDYHQKLQGKPQ 321
+ +K + KP+
Sbjct: 336 APKEEKVEKKEEKPK 350
Score = 30.0 bits (66), Expect = 3.4
Identities = 60/277 (21%), Positives = 110/277 (39%), Gaps = 31/277 (11%)
Query: 73 ARQDDEKRRQELEEKIRRKEE----------EEAKTV--SAAAAEKEPVPVPVQEIEIDS 120
A +EK+ +E E++ KEE E+AK+ + EK PVP +E
Sbjct: 204 AEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKG 263
Query: 121 TTELDGHQEVEKVQ---PPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQ----- 172
+ + EK + P PV+E S +++P + VP+ P + +
Sbjct: 264 KSPVPKSPVEEKGKSPVPKSPVEEKGK-SPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGK 322
Query: 173 -EQFQKNPDSYNGAVRENYTWSQDY--TDLEVRVPVPKHVVKGKQVSVALSSSSIRVAML 229
EQ ++ A +E ++ D+ + V + V + S++V +
Sbjct: 323 GEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLE 382
Query: 230 EENGE--RVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDK 287
+E E + L + K K E S E G S+ + N +EG+E ++++
Sbjct: 383 KETKEEGKPLQQEKEKEKAGGEGG--SEEEGSDKGAKGSRKEDIAVNGEVEGKE--EVEQ 438
Query: 288 INKERSMATVDEEEQAVLDRLTFDYHQKLQGKPQSHE 324
KE+ +EE+ V + L + +G +S E
Sbjct: 439 ETKEKGSGR-EEEKGVVTNGLDLSPADEKKGGDKSEE 474
>gi|154354979 myosin X [Homo sapiens]
Length = 2058
Score = 36.6 bits (83), Expect = 0.036
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 74 RQDDEKRRQELEEKIRRKEEEEAKTVSAAAAE----KEPVPVPVQEIEI--DSTTELDGH 127
R+ +EK++QE EEK +R+EEE + AE +E QE+E S E +
Sbjct: 816 REQEEKKKQEEEEKKKREEEERERERERREAELRAQQEEETRKQQELEALQKSQKEAELT 875
Query: 128 QEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQ 174
+E+EK + V+E+ +E E + E+ L ++QE+
Sbjct: 876 RELEKQKENKQVEEILRLEKEIEDLQRMKEQQELSLTEASLQKLQER 922
>gi|189571679 NudC domain containing 1 isoform 2 [Homo sapiens]
Length = 554
Score = 36.6 bits (83), Expect = 0.036
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 190 YTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTE 249
Y W Q DL V + +P+ K + + + I + + + +EGKL I+ E
Sbjct: 249 YYWQQTEDDLTVTIRLPEDSTK-EDIQIQFLPDHINIVLKDHQ----FLEGKLYSSIDHE 303
Query: 250 SSLWSLEPGKCVLVNLSKVGE-YWWNAILEGEE 281
SS W ++ + ++L K E W ++ G++
Sbjct: 304 SSTWIIKESNSLEISLIKKNEGLTWPELVIGDK 336
>gi|189571677 NudC domain containing 1 isoform 1 [Homo sapiens]
Length = 583
Score = 36.6 bits (83), Expect = 0.036
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 190 YTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTE 249
Y W Q DL V + +P+ K + + + I + + + +EGKL I+ E
Sbjct: 278 YYWQQTEDDLTVTIRLPEDSTK-EDIQIQFLPDHINIVLKDHQ----FLEGKLYSSIDHE 332
Query: 250 SSLWSLEPGKCVLVNLSKVGE-YWWNAILEGEE 281
SS W ++ + ++L K E W ++ G++
Sbjct: 333 SSTWIIKESNSLEISLIKKNEGLTWPELVIGDK 365
>gi|21687129 NudC domain containing 2 [Homo sapiens]
Length = 157
Score = 36.6 bits (83), Expect = 0.036
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 183 NGAVRENYTWSQDYTDLE---VRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLME 239
+G V W Q Y LE + V VP + + + L S + +++ G R +++
Sbjct: 9 SGVVPCGTPWGQWYQTLEEVFIEVQVPPGT-RAQDIQCGLQSRHVALSV----GGREILK 63
Query: 240 GKLTHKINTESSLWSLEPGKCVLVNLSKV---GEYWWNAILEGEEPID 284
GKL + W+LE K V + L+K W ++LE E D
Sbjct: 64 GKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAAD 111
>gi|13259508 dynactin 1 isoform 2 [Homo sapiens]
Length = 1144
Score = 36.2 bits (82), Expect = 0.047
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 67 KTFDHMARQDDEK------RRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS 120
K D A+ DE+ R +E + +R+KE+E +T+ A A+ + + ++ E+
Sbjct: 844 KKLDSAAKDADERIEKVQTRLEETQALLRKKEKEFEETMDALQADIDQLEA--EKAELKQ 901
Query: 121 TTELDGHQEVEKVQPPGPV-----------KEMAHGSQEAEAPGAVAGAAEVPREPPILP 169
+ +E ++ P P +E G+ +APG+V G V P +L
Sbjct: 902 RLNSQSKRTIEGLRGPPPSGIATLVSGIAGEEQQRGAIPGQAPGSVPGPGLVKDSPLLLQ 961
Query: 170 RI 171
+I
Sbjct: 962 QI 963
>gi|13259510 dynactin 1 isoform 1 [Homo sapiens]
Length = 1278
Score = 36.2 bits (82), Expect = 0.047
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 67 KTFDHMARQDDEK------RRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDS 120
K D A+ DE+ R +E + +R+KE+E +T+ A A+ + + ++ E+
Sbjct: 978 KKLDSAAKDADERIEKVQTRLEETQALLRKKEKEFEETMDALQADIDQLEA--EKAELKQ 1035
Query: 121 TTELDGHQEVEKVQPPGPV-----------KEMAHGSQEAEAPGAVAGAAEVPREPPILP 169
+ +E ++ P P +E G+ +APG+V G V P +L
Sbjct: 1036 RLNSQSKRTIEGLRGPPPSGIATLVSGIAGEEQQRGAIPGQAPGSVPGPGLVKDSPLLLQ 1095
Query: 170 RI 171
+I
Sbjct: 1096 QI 1097
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 35.8 bits (81), Expect = 0.061
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 61 LVLQVFKTFDH--MARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPV--QEI 116
LV + K +D + +++E R E EE++ +E EE + + A + P+P P +E+
Sbjct: 1903 LVRHLKKCYDDQTLEEEEEEAERGEEEEEVEEEEVEEEQGLEPPAGPEGPLPEPPDGEEL 1962
Query: 117 EIDSTTELDGHQEVEKVQP-PGP 138
T+ G + EK P P P
Sbjct: 1963 SQAEATKAGGKEPEEKATPSPSP 1985
Score = 31.6 bits (70), Expect = 1.2
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 65 VFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDSTTEL 124
VF+ H+ + D++ +E EE+ R EEEE V+E E++ L
Sbjct: 1900 VFELVRHLKKCYDDQTLEEEEEEAERGEEEE----------------EVEEEEVEEEQGL 1943
Query: 125 DGHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAE 160
+ P GP+ E G + ++A AG E
Sbjct: 1944 E-----PPAGPEGPLPEPPDGEELSQAEATKAGGKE 1974
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 35.8 bits (81), Expect = 0.061
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 61 LVLQVFKTFDH--MARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPV--QEI 116
LV + K +D + +++E R E EE++ +E EE + + A + P+P P +E+
Sbjct: 1819 LVRHLKKCYDDQTLEEEEEEAERGEEEEEVEEEEVEEEQGLEPPAGPEGPLPEPPDGEEL 1878
Query: 117 EIDSTTELDGHQEVEKVQP-PGP 138
T+ G + EK P P P
Sbjct: 1879 SQAEATKAGGKEPEEKATPSPSP 1901
Score = 31.6 bits (70), Expect = 1.2
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 65 VFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDSTTEL 124
VF+ H+ + D++ +E EE+ R EEEE V+E E++ L
Sbjct: 1816 VFELVRHLKKCYDDQTLEEEEEEAERGEEEE----------------EVEEEEVEEEQGL 1859
Query: 125 DGHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAE 160
+ P GP+ E G + ++A AG E
Sbjct: 1860 E-----PPAGPEGPLPEPPDGEELSQAEATKAGGKE 1890
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 35.8 bits (81), Expect = 0.061
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 61 LVLQVFKTFDH--MARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPV--QEI 116
LV + K +D + +++E R E EE++ +E EE + + A + P+P P +E+
Sbjct: 1819 LVRHLKKCYDDQTLEEEEEEAERGEEEEEVEEEEVEEEQGLEPPAGPEGPLPEPPDGEEL 1878
Query: 117 EIDSTTELDGHQEVEKVQP-PGP 138
T+ G + EK P P P
Sbjct: 1879 SQAEATKAGGKEPEEKATPSPSP 1901
Score = 31.6 bits (70), Expect = 1.2
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 65 VFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDSTTEL 124
VF+ H+ + D++ +E EE+ R EEEE V+E E++ L
Sbjct: 1816 VFELVRHLKKCYDDQTLEEEEEEAERGEEEE----------------EVEEEEVEEEQGL 1859
Query: 125 DGHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAE 160
+ P GP+ E G + ++A AG E
Sbjct: 1860 E-----PPAGPEGPLPEPPDGEELSQAEATKAGGKE 1890
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 35.4 bits (80), Expect = 0.080
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 70 DHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDSTTELDGHQE 129
D A++ D+K E+ +E E + + A KE P Q+ E E +G ++
Sbjct: 16 DEKAKEKDKKAEGAATEEEGTPKESEPQAAAEPAEAKEGKEKPDQDAE-GKAEEKEGEKD 74
Query: 130 VEKVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPRIQEQFQKNP 179
+ P E P GAAE EPP P QEQ P
Sbjct: 75 AAAAKEEAPKAE----------PEKTEGAAEAKAEPPKAPE-QEQAAPGP 113
>gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens]
Length = 1035
Score = 34.7 bits (78), Expect = 0.14
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 16/79 (20%)
Query: 74 RQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVP--------------VQEIEID 119
+Q+++KRRQE EE RRK + + + +++ VPVP Q + +
Sbjct: 713 QQEEQKRRQEEEELFRRKHVRQQELLLKLLQQQQAVPVPPAPSSPPPLWAGLAKQGLSMK 772
Query: 120 STTE--LDGHQEVEKVQPP 136
+ E L+G +++ K PP
Sbjct: 773 TLLELQLEGERQLHKQPPP 791
>gi|118601081 heterogeneous nuclear ribonucleoprotein U-like 2 [Homo
sapiens]
Length = 747
Score = 34.7 bits (78), Expect = 0.14
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 75 QDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEIDSTTELDGHQE-VEKV 133
++DE+ +E EE + E+EE A +P P P + +++ E D ++ E
Sbjct: 76 EEDEEEEEEDEEALLEDEDEEPPPAQALGQAAQPPPEPPEAAAMEAAAEPDASEKPAEAT 135
Query: 134 QPPGPV---KEMAHGSQEAEAPGAVAG----AAEVP 162
G V +E G +E + P +G +EVP
Sbjct: 136 AGSGGVNGGEEQGLGKREEDEPEERSGDETPGSEVP 171
>gi|126722969 centromere protein T [Homo sapiens]
Length = 561
Score = 34.3 bits (77), Expect = 0.18
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 60 ALVLQVFKTFDHMARQDDEKRRQELEEKIRRKEEEEAKTVSAAAAEKEPVPVPVQEIEID 119
A L T ++ +D+ + + E+ +K EEE +VS A P V+E E
Sbjct: 305 AFALGFLSTSSGVSGEDEVEPLHDGVEEAEKKMEEEGVSVSEMEATGAQGPSRVEEAE-- 362
Query: 120 STTELDGHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAG 157
GH EV + E + G+ EA+ PGA +G
Sbjct: 363 ------GHTEVTEA-------EGSQGTAEADGPGASSG 387
>gi|21264355 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin e1 [Homo sapiens]
Length = 411
Score = 34.3 bits (77), Expect = 0.18
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 13/112 (11%)
Query: 70 DHMARQDDEKRRQELEEKIRRK------EEEEAKTVSAAAAEKEPVPVPVQEIEIDSTTE 123
+ AR+ E+R +E E+ R EEE+A + E +P+ +E ++ TTE
Sbjct: 293 EEQARKRQEEREKEAAEQAERSQSSIVPEEEQAANKGEEKKDDENIPMETEETHLEETTE 352
Query: 124 LDGHQE------VEKVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILP 169
+ E +K V MA G+ + +A V EPP P
Sbjct: 353 SQQNGEEGTSTPEDKESGQEGVDSMAEEGTSDSNTGSESNSATV-EEPPTDP 403
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 33.9 bits (76), Expect = 0.23
Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 15/146 (10%)
Query: 52 GFPPGAAQALVLQVFKTFDHMARQDDEKRRQELEEK-----IRRKEEEEAKTVSAAAAEK 106
G PP + L + + D +++E+ +E EE+ +EE+E + E+
Sbjct: 869 GGPPALEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEE 928
Query: 107 EPVPVPVQEI--EIDSTTELDGHQEVEKVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPRE 164
E +E E++ E + +E E+++ V+++ G+ E GA P
Sbjct: 929 EEFEEEFEEEEGELEEEEEEEDEEEEEELE---EVEDLEFGTAGGEVE---EGAPPPPTL 982
Query: 165 PPILPRIQE--QFQKNPDSYNGAVRE 188
PP LP + + Q P+ G + E
Sbjct: 983 PPALPPPESPPKVQPEPEPEPGLLLE 1008
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 33.9 bits (76), Expect = 0.23
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 59 QALVLQVFKTFDHMARQDDEKRRQELEEKIRRKE---EEEAKTVSAAAAEKEPVPVPVQE 115
QAL Q + Q++EKRRQ L+ ++ E E+E K + AAA K+ + +++
Sbjct: 1570 QALKGQFERDLQARDEQNEEKRRQ-LQRQLHEYETELEDERKQRALAAAAKKKLEGDLKD 1628
Query: 116 IEIDSTTELDGHQEVEK 132
+E+ + + + G +E K
Sbjct: 1629 LELQADSAIKGREEAIK 1645
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,212,481
Number of Sequences: 37866
Number of extensions: 747066
Number of successful extensions: 5742
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 4754
Number of HSP's gapped (non-prelim): 996
length of query: 361
length of database: 18,247,518
effective HSP length: 104
effective length of query: 257
effective length of database: 14,309,454
effective search space: 3677529678
effective search space used: 3677529678
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.