Search of human proteins with 122937450

Search of human proteins with 122937450

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|122937450 shisa homolog 3 [Homo sapiens]
         (238 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|122937450 shisa homolog 3 [Homo sapiens]                           503   e-143
gi|56090523 shisa homolog 2 [Homo sapiens]                            201   4e-52
gi|223633890 hypothetical protein LOC729956 [Homo sapiens]             56   2e-08
gi|223633982 hypothetical protein LOC729993 isoform 2 [Homo sapi...    52   5e-07
gi|223633980 hypothetical protein LOC729993 isoform 1 [Homo sapi...    52   5e-07
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi...    51   8e-07
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi...    51   8e-07
gi|39930575 shisa homolog 4 [Homo sapiens]                             51   8e-07
gi|211904177 hypothetical protein LOC388336 [Homo sapiens]             49   3e-06
gi|169167848 PREDICTED: hypothetical protein LOC100132916 [Homo ...    39   0.005
gi|169167926 PREDICTED: hypothetical protein LOC100132916 [Homo ...    39   0.005
gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo ...    39   0.005
gi|150010659 hypothetical protein LOC85352 [Homo sapiens]              38   0.007
gi|66730481 neuregulin 3 [Homo sapiens]                                38   0.009
gi|110431352 transducer of regulated CREB protein 3 isoform b [H...    35   0.057
gi|110431354 transducer of regulated CREB protein 3 isoform a [H...    35   0.057
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ...    34   0.097
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ...    34   0.097
gi|111118990 alpha-1A-adrenergic receptor isoform 4 [Homo sapiens]     34   0.13 
gi|111118992 alpha-1A-adrenergic receptor isoform 1 [Homo sapiens]     34   0.13 
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]     34   0.13 
gi|111118988 alpha-1A-adrenergic receptor isoform 3 [Homo sapiens]     34   0.13 
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        33   0.17 
gi|148612879 polyhomeotic like 3 [Homo sapiens]                        33   0.22 
gi|188536004 zinc finger protein 469 [Homo sapiens]                    33   0.28 
gi|52485606 formin-like 2 [Homo sapiens]                               33   0.28 
gi|111548662 hypothetical protein LOC348378 [Homo sapiens]             33   0.28 
gi|122937321 UNC homeobox [Homo sapiens]                               33   0.28 
gi|187960059 syndecan 3 [Homo sapiens]                                 32   0.37 
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]          32   0.37 

>gi|122937450 shisa homolog 3 [Homo sapiens]
          Length = 238

 Score =  503 bits (1294), Expect = e-143
 Identities = 238/238 (100%), Positives = 238/238 (100%)

Query: 1   MRALLALCLLLGWLRWGPAGAQQSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSC 60
           MRALLALCLLLGWLRWGPAGAQQSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSC
Sbjct: 1   MRALLALCLLLGWLRWGPAGAQQSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSC 60

Query: 61  ALRYCCAAADARLEQGGCTNDRRELEHPGITAQPVYVPFLIVGSIFIAFIILGSVVAIYC 120
           ALRYCCAAADARLEQGGCTNDRRELEHPGITAQPVYVPFLIVGSIFIAFIILGSVVAIYC
Sbjct: 61  ALRYCCAAADARLEQGGCTNDRRELEHPGITAQPVYVPFLIVGSIFIAFIILGSVVAIYC 120

Query: 121 CTCLRPKEPSQQPIRFSLRSYQTETLPMILTSTSPRAPSRQSSTATSSSSTGGSIRRFSF 180
           CTCLRPKEPSQQPIRFSLRSYQTETLPMILTSTSPRAPSRQSSTATSSSSTGGSIRRFSF
Sbjct: 121 CTCLRPKEPSQQPIRFSLRSYQTETLPMILTSTSPRAPSRQSSTATSSSSTGGSIRRFSF 180

Query: 181 ARAEPGCLVPSPPPPYTTSHSIHLAQPSGFLVSPQYFAYPLQQEPPLPGKSCPDFSSS 238
           ARAEPGCLVPSPPPPYTTSHSIHLAQPSGFLVSPQYFAYPLQQEPPLPGKSCPDFSSS
Sbjct: 181 ARAEPGCLVPSPPPPYTTSHSIHLAQPSGFLVSPQYFAYPLQQEPPLPGKSCPDFSSS 238


>gi|56090523 shisa homolog 2 [Homo sapiens]
          Length = 295

 Score =  201 bits (512), Expect = 4e-52
 Identities = 108/204 (52%), Positives = 137/204 (67%), Gaps = 16/204 (7%)

Query: 19  AGAQQSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCAAADARLEQGGC 78
           AGA+ SGEYCHGW+D QG +  GFQCPE FD  DATICCGSCALRYCC++A+ARL+QGGC
Sbjct: 29  AGARASGEYCHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCSSAEARLDQGGC 88

Query: 79  TNDRR---------ELEHPGITAQPVYVPFLIVGSIFIAFIILGSVVAIYCCTCLRPKEP 129
            NDR+         + + P  +A P+YVPFLIVGS+F+AFIILGS+VA  CC CLRPK+ 
Sbjct: 89  DNDRQQGAGEPGRADKDGPDGSAVPIYVPFLIVGSVFVAFIILGSLVAACCCRCLRPKQD 148

Query: 130 SQQPIRFSLRSYQTETLPMI-LTSTSPRAPSRQSSTATSSSSTGGSIRRFSFARAEPGCL 188
            QQ  R    +   ET+PMI   STS  + SRQSSTA SSSS+  S  R    R++  C 
Sbjct: 149 PQQS-RAPGGNRLMETIPMIPSASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCC 207

Query: 189 VPSPPPPYTTSHSIHLAQPSGFLV 212
           +P       T +++++  P+ F V
Sbjct: 208 LPE-----GTMNNVYVNMPTNFSV 226


>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
          Length = 538

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 29/73 (39%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 15  RWGPAG-------AQQSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCA 67
           R GPAG       A    E CHG+ DV G Y   F C     T     CCG+C  R+CC 
Sbjct: 62  RTGPAGGAGAAARAPPPAELCHGYYDVMGQYDATFNC----STGSYRFCCGTCHYRFCCE 117

Query: 68  AADARLEQGGCTN 80
               RL Q  C+N
Sbjct: 118 HRHMRLAQASCSN 130


>gi|223633982 hypothetical protein LOC729993 isoform 2 [Homo
           sapiens]
          Length = 262

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 26  EYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCAAADARLEQGGCTN 80
           ++C G+ DV G +   F C       D   CCG+C  R+CC     RL Q  CTN
Sbjct: 113 DFCRGYFDVMGQWDPPFNCSSG----DFIFCCGTCGFRFCCTFKKRRLNQSTCTN 163


>gi|223633980 hypothetical protein LOC729993 isoform 1 [Homo
           sapiens]
          Length = 465

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 26  EYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCAAADARLEQGGCTN 80
           ++C G+ DV G +   F C       D   CCG+C  R+CC     RL Q  CTN
Sbjct: 113 DFCRGYFDVMGQWDPPFNCSSG----DFIFCCGTCGFRFCCTFKKRRLNQSTCTN 163


>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
           sapiens]
          Length = 547

 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 8/68 (11%)

Query: 17  GPAG----AQQSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCAAADAR 72
           GPA     A + G+ C G+ DV G +   F C         + CCG+C  R+CC     R
Sbjct: 45  GPAAPGTTAPEGGDRCRGYYDVMGQWDPPFNCSSGA----YSFCCGTCGYRFCCHDGPRR 100

Query: 73  LEQGGCTN 80
           L+Q  C+N
Sbjct: 101 LDQSRCSN 108


>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
           sapiens]
          Length = 492

 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 8/68 (11%)

Query: 17  GPAG----AQQSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCAAADAR 72
           GPA     A + G+ C G+ DV G +   F C         + CCG+C  R+CC     R
Sbjct: 45  GPAAPGTTAPEGGDRCRGYYDVMGQWDPPFNCSSGA----YSFCCGTCGYRFCCHDGPRR 100

Query: 73  LEQGGCTN 80
           L+Q  C+N
Sbjct: 101 LDQSRCSN 108


>gi|39930575 shisa homolog 4 [Homo sapiens]
          Length = 197

 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 32/183 (17%)

Query: 24  SGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCAAADARLEQGGCTNDRR 83
           +GE C  ++D  G++H GF C E F     T CCG+C  RYCC      + +       R
Sbjct: 27  AGEDCLWYLDRNGSWHPGFNC-EFF-----TFCCGTCYHRYCCRDLTLLITE-------R 73

Query: 84  ELEHPGITAQPVYVPFLIVGSIFIAFIILGSVVAIYCCTC---LRPKEPSQQPIRFSLRS 140
           + +H  +   P  +   I  ++ +   ++ + +  + C+C    R ++  Q P       
Sbjct: 74  QQKH-CLAFSPKTIAG-IASAVILFVAVVATTICCFLCSCCYLYRRRQQLQSP------- 124

Query: 141 YQTETLPMILTSTSPRAPSRQSSTATSSS-------STGGSIRRFSFARAEPGCLVPSPP 193
           ++ + +PM      P  P  Q   A  +           G   ++    A P    P+ P
Sbjct: 125 FEGQEIPMTGIPVQPVYPYPQDPKAGPAPPQPGFMYPPSGPAPQYPLYPAGPPVYNPAAP 184

Query: 194 PPY 196
           PPY
Sbjct: 185 PPY 187


>gi|211904177 hypothetical protein LOC388336 [Homo sapiens]
          Length = 551

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 19  AGAQQSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCAAADARLEQGGC 78
           A A  + E C G+ DV G Y + F+C           CCG+C  R+CC     +L+Q  C
Sbjct: 85  ASAAVTYETCWGYYDVSGQYDKEFECNNSESGY--LYCCGTCYYRFCCKKRHEKLDQRQC 142

Query: 79  TN 80
           TN
Sbjct: 143 TN 144


>gi|169167848 PREDICTED: hypothetical protein LOC100132916 [Homo
          sapiens]
          Length = 160

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 23 QSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCA 67
          ++   C G+  +  ++ E FQCP   +      CCG   L+YCC+
Sbjct: 3  EASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCS 47


>gi|169167926 PREDICTED: hypothetical protein LOC100132916 [Homo
          sapiens]
          Length = 160

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 23 QSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCA 67
          ++   C G+  +  ++ E FQCP   +      CCG   L+YCC+
Sbjct: 3  EASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCS 47


>gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo
          sapiens]
          Length = 160

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 23 QSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCA 67
          ++   C G+  +  ++ E FQCP   +      CCG   L+YCC+
Sbjct: 3  EASRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCS 47


>gi|150010659 hypothetical protein LOC85352 [Homo sapiens]
          Length = 199

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 28 CHGWVDVQGNYHEGFQCPEDFDTLDATICC--GSCALRYCC 66
          C  + D +G YH GF CP   D     +CC   +   +YCC
Sbjct: 31 CEPYTDHKGRYHFGFHCPRLSDNKTFILCCHHNNTVFKYCC 71


>gi|66730481 neuregulin 3 [Homo sapiens]
          Length = 696

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 8/144 (5%)

Query: 94  PVYVPFLIVGS--IFIAFIILGSVVAIYCCTCLRPKEPSQQPIRFSLRSYQTETLPMILT 151
           P+++ F+ +G   + + +I++GSV        +  K   Q P   S  S   + +    T
Sbjct: 71  PLFIGFIGLGLSLMLLKWIVVGSVKEYVPTDLVDSKGMGQDPFFLSKPSSFPKAMETTTT 130

Query: 152 STSPRAPSRQSSTATSSSSTGG--SIRRFSFARAE---PGCLVP-SPPPPYTTSHSIHLA 205
           +TS  +P+  S+   +SS T    S R  +  RA    PG  VP    P  TT+ +    
Sbjct: 131 TTSTTSPATPSAGGAASSRTPNRISTRLTTITRAPTRFPGHRVPIRASPRSTTARNTAAP 190

Query: 206 QPSGFLVSPQYFAYPLQQEPPLPG 229
                  +P + +  L   PP+PG
Sbjct: 191 ATVPSTTAPFFSSSTLGSRPPVPG 214


>gi|110431352 transducer of regulated CREB protein 3 isoform b [Homo
           sapiens]
          Length = 618

 Score = 35.0 bits (79), Expect = 0.057
 Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 22/104 (21%)

Query: 125 RPKEPSQQPIRFSLRSYQTETLPMILTSTSPRAPSRQSSTATSSSSTGGSIRRFSFARAE 184
           R ++P   P+  S      +     L+STSP AP   S   +S  S      + SF   E
Sbjct: 384 RRRQPPVSPLTLSPGPEAHQGFSRQLSSTSPLAPYPTSQMVSSDRS------QLSFLPTE 437

Query: 185 PGCLVPSPPPPYTTSHSIHLAQPSGFLVSPQYFAYPLQQEPPLP 228
               V SPPPPY                +PQ    PL Q+P  P
Sbjct: 438 AQAQV-SPPPPYP---------------APQELTQPLLQQPRAP 465


>gi|110431354 transducer of regulated CREB protein 3 isoform a [Homo
           sapiens]
          Length = 619

 Score = 35.0 bits (79), Expect = 0.057
 Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 22/104 (21%)

Query: 125 RPKEPSQQPIRFSLRSYQTETLPMILTSTSPRAPSRQSSTATSSSSTGGSIRRFSFARAE 184
           R ++P   P+  S      +     L+STSP AP   S   +S  S      + SF   E
Sbjct: 384 RRRQPPVSPLTLSPGPEAHQGFSRQLSSTSPLAPYPTSQMVSSDRS------QLSFLPTE 437

Query: 185 PGCLVPSPPPPYTTSHSIHLAQPSGFLVSPQYFAYPLQQEPPLP 228
               V SPPPPY                +PQ    PL Q+P  P
Sbjct: 438 AQAQV-SPPPPYP---------------APQELTQPLLQQPRAP 465


>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
           sapiens]
          Length = 258

 Score = 34.3 bits (77), Expect = 0.097
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 152 STSPRAPSRQSSTATSSSSTGGSIRRFSFARA-EPGCLVPSPP-PPYTTSHSIHLAQPSG 209
           + + R+P   SS ++SS   G  + R    RA  PG +VP PP PP +       +  SG
Sbjct: 75  AAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSG 134

Query: 210 FLVSPQYFAYPLQQEPPL-PGKSC 232
                  + +PLQ    L PG+ C
Sbjct: 135 STADLPEWPWPLQLLLLLAPGRGC 158


>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
           sapiens]
          Length = 258

 Score = 34.3 bits (77), Expect = 0.097
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 152 STSPRAPSRQSSTATSSSSTGGSIRRFSFARA-EPGCLVPSPP-PPYTTSHSIHLAQPSG 209
           + + R+P   SS ++SS   G  + R    RA  PG +VP PP PP +       +  SG
Sbjct: 75  AAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSG 134

Query: 210 FLVSPQYFAYPLQQEPPL-PGKSC 232
                  + +PLQ    L PG+ C
Sbjct: 135 STADLPEWPWPLQLLLLLAPGRGC 158


>gi|111118990 alpha-1A-adrenergic receptor isoform 4 [Homo sapiens]
          Length = 455

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 90  ITAQPVYVPFLIVGSIFIAFIILGSVVAIYCCTCLRPKEPSQQPIRFSLRSYQTETLPMI 149
           I  +P YV F  +GS ++   I   ++ +YC   +  K  S+  ++  L++ ++++  + 
Sbjct: 178 INEEPGYVLFSALGSFYLPLAI---ILVMYCRVYVVAKRESRG-LKSGLKTDKSDSEQVT 233

Query: 150 LTSTSPRAPSRQSSTATSSSSTGGSIRRFSFAR 182
           L      AP+  S  A++ + T  S+R   F+R
Sbjct: 234 LRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSR 266


>gi|111118992 alpha-1A-adrenergic receptor isoform 1 [Homo sapiens]
          Length = 466

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 90  ITAQPVYVPFLIVGSIFIAFIILGSVVAIYCCTCLRPKEPSQQPIRFSLRSYQTETLPMI 149
           I  +P YV F  +GS ++   I   ++ +YC   +  K  S+  ++  L++ ++++  + 
Sbjct: 178 INEEPGYVLFSALGSFYLPLAI---ILVMYCRVYVVAKRESRG-LKSGLKTDKSDSEQVT 233

Query: 150 LTSTSPRAPSRQSSTATSSSSTGGSIRRFSFAR 182
           L      AP+  S  A++ + T  S+R   F+R
Sbjct: 234 LRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSR 266


>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
          Length = 475

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 90  ITAQPVYVPFLIVGSIFIAFIILGSVVAIYCCTCLRPKEPSQQPIRFSLRSYQTETLPMI 149
           I  +P YV F  +GS ++   I   ++ +YC   +  K  S+  ++  L++ ++++  + 
Sbjct: 178 INEEPGYVLFSALGSFYLPLAI---ILVMYCRVYVVAKRESRG-LKSGLKTDKSDSEQVT 233

Query: 150 LTSTSPRAPSRQSSTATSSSSTGGSIRRFSFAR 182
           L      AP+  S  A++ + T  S+R   F+R
Sbjct: 234 LRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSR 266


>gi|111118988 alpha-1A-adrenergic receptor isoform 3 [Homo sapiens]
          Length = 429

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 90  ITAQPVYVPFLIVGSIFIAFIILGSVVAIYCCTCLRPKEPSQQPIRFSLRSYQTETLPMI 149
           I  +P YV F  +GS ++   I   ++ +YC   +  K  S+  ++  L++ ++++  + 
Sbjct: 178 INEEPGYVLFSALGSFYLPLAI---ILVMYCRVYVVAKRESRG-LKSGLKTDKSDSEQVT 233

Query: 150 LTSTSPRAPSRQSSTATSSSSTGGSIRRFSFAR 182
           L      AP+  S  A++ + T  S+R   F+R
Sbjct: 234 LRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSR 266


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 125  RPKEPSQQPIRFSLRSYQTETLPMILTSTSPRAPSRQSSTATSSSSTGGSIRRFSFARAE 184
            RP EP+    +    S  + +     +S+S  + S  SS+++SSSS+  S    S + A+
Sbjct: 2594 RPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAK 2653

Query: 185  PG-CLVPSP----PPPYTTSHSIHLAQPSGFLVSPQYFAY-PLQQEPPLPGKSCPDFSSS 238
            PG   +P P     PP     S    +P   L   +  +Y P+++  P P  S  D  SS
Sbjct: 2654 PGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSS 2713


>gi|148612879 polyhomeotic like 3 [Homo sapiens]
          Length = 995

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 13/116 (11%)

Query: 126 PKEPSQQPIRFSLRSYQTETLPMILTSTSPRAPSRQSSTATSSSSTGGSIRRFSFARAEP 185
           P  PSQ P          +  P++ ++  P  P+ Q STA    +T         A+   
Sbjct: 415 PHSPSQSPTIIIHPQALIQPHPLVSSALQP-GPNLQQSTANQVQAT---------AQLNL 464

Query: 186 GCLVPSPPPPYTTSHSIH---LAQPSGFLVSPQYFAYPLQQEPPLPGKSCPDFSSS 238
              +P P  P      +    L  P   +VSP +  Y   Q  P+P  S P  S+S
Sbjct: 465 PSHLPLPASPVVHIGPVQQSALVSPGQQIVSPSHQQYSSLQSSPIPIASPPQMSTS 520


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 32.7 bits (73), Expect = 0.28
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 126  PKEPSQQPIRFSLRSYQTETLPMILTSTSPRAPSRQSSTATSSSSTGGSIRRFSFA---- 181
            PK+P Q P          ET P +      + P     +A  S+    ++R    A    
Sbjct: 1171 PKDPLQVPTNTETSE---ETRPSLDFPQEAKEPETAEESAPDSTEFTEALRSPPAACAGE 1227

Query: 182  -RAEPGCLVPSPPPPYTTSHSIHLAQPSGFLVS 213
              A PG L+P  PPP  + H     +PSG L +
Sbjct: 1228 MGASPGLLIPEQPPP--SRHDTGTPKPSGSLAN 1258


>gi|52485606 formin-like 2 [Homo sapiens]
          Length = 1092

 Score = 32.7 bits (73), Expect = 0.28
 Identities = 18/44 (40%), Positives = 19/44 (43%)

Query: 190 PSPPPPYTTSHSIHLAQPSGFLVSPQYFAYPLQQEPPLPGKSCP 233
           P PPPP        L  P+   V     A PL   PPLPG S P
Sbjct: 560 PPPPPPPPPPPPPPLPGPAAETVPAPPLAPPLPSAPPLPGTSSP 603


>gi|111548662 hypothetical protein LOC348378 [Homo sapiens]
          Length = 190

 Score = 32.7 bits (73), Expect = 0.28
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 28 CHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCC 66
          C  +V  +     GF CP       A  CCG    +YCC
Sbjct: 5  CTSYVSAEQEVVRGFSCPRPGGEAAAVFCCGFRDHKYCC 43


>gi|122937321 UNC homeobox [Homo sapiens]
          Length = 531

 Score = 32.7 bits (73), Expect = 0.28
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 17/85 (20%)

Query: 154 SPRAPSRQSSTATSSSSTGGSIRRFSFARAEPGCLVPSPPPPYTTSHSIHLAQPSGFLVS 213
           SP   S  S+ ++ S S GG +        EP    P PPPP       H +  +G   +
Sbjct: 221 SPGGLSLHSAPSSDSDSGGGGLS------PEP----PEPPPPAAKGPGAHASGAAGTAPA 270

Query: 214 PQYFAYPLQQEPPLPGKSCPDFSSS 238
           P         EPP PG   P F  S
Sbjct: 271 P-------PGEPPAPGTCDPAFYPS 288


>gi|187960059 syndecan 3 [Homo sapiens]
          Length = 442

 Score = 32.3 bits (72), Expect = 0.37
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 20/126 (15%)

Query: 126 PKEPSQQPIRFSLRSYQTE----------TLPMILTSTSPRAPSRQSSTATSSSSTGGSI 175
           P+EPSQ+    S     T           T+P  + + +P  P+    TAT++      +
Sbjct: 149 PEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGV 208

Query: 176 RRF----SFARAEPGCLVPSPPPPYTTSHSIHLAQPSGFLVS-----PQYFAYP-LQQEP 225
           RR         A      P  P P TT+  +    P+  LVS     P+    P   QEP
Sbjct: 209 RRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEP 268

Query: 226 PLPGKS 231
            +P +S
Sbjct: 269 DIPERS 274


>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
          Length = 796

 Score = 32.3 bits (72), Expect = 0.37
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 127 KEPSQQPIRFSLRSYQTETLPMILTSTSPRAPSRQSSTATSSSSTGGSIRRFSFARAEPG 186
           ++  QQ  +   +  Q + L  +  S+ P   +  S       S   +    + A  E  
Sbjct: 109 QQQQQQQQQQQQQQQQQQQLNHVDGSSKPAVLAAPSGLERYGLSAAAAAAAAAAAAVEQR 168

Query: 187 CLVPSPPPPYTTSHSIHLAQPSGFLVSPQYFAYPLQQE-PPLPGKSCPDFSSS 238
                PPPP +   S H A+    L  P  F  P  +E PP   +  P+ SS+
Sbjct: 169 SRFEYPPPPVSLGSSSHTARLPNGLGGPNGFPKPTPEEGPPELNRQSPNSSSA 221


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,584,537
Number of Sequences: 37866
Number of extensions: 618221
Number of successful extensions: 3399
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 3206
Number of HSP's gapped (non-prelim): 275
length of query: 238
length of database: 18,247,518
effective HSP length: 99
effective length of query: 139
effective length of database: 14,498,784
effective search space: 2015330976
effective search space used: 2015330976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.