Guide to the Human Genome
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Name: LOC100287204 Sequence: fasta or formatted (161aa) NCBI GI: 239746315
Description:

PREDICTED: hypothetical protein XP_002343693

Not currently referenced in the text

Other entries for this name:
alt mRNA {161aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         21           2
 C cysteine            3.1          5           1
 D aspartate           2.5          4           1
 E glutamate           3.1          5           2
 F phenylalanine       2.5          4           1
 G glycine            14.3         23           4
 H histidine           3.1          5           1
 I isoleucine          1.2          2           1
 K lysine              1.2          2           1
 L leucine             5.0          8           2
 M methionine          1.2          2           1
 N asparagine          2.5          4           1
 P proline            11.2         18           2
 Q glutamine           4.3          7           1
 R arginine            9.3         15           1
 S serine              8.1         13           3
 T threonine           3.7          6           1
 V valine              5.6          9           2
 W tryptophan          4.3          7           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343693 
LOC100287204          1.000   PREDICTED: hypothetical protein 
LOC100289763          0.049   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.049   PREDICTED: hypothetical protein XP_002343623 
LOC100292172          0.046   PREDICTED: hypothetical protein 
LOC100292217          0.034   PREDICTED: hypothetical protein 
LOC100288033          0.034   PREDICTED: hypothetical protein 
LOC100288033          0.034   PREDICTED: hypothetical protein XP_002343859 
LOC644794             0.024   PREDICTED: hypothetical protein 
LOC644794             0.024   PREDICTED: hypothetical protein 
LOC644794             0.024   PREDICTED: hypothetical protein 
LOC644794             0.024   PREDICTED: hypothetical protein 
TBKBP1                0.024   TBK1 binding protein 1 
C6orf136              0.021   hypothetical protein LOC221545 isoform 3 
CDC42EP1              0.021   CDC42 effector protein 1 
FAM100B               0.021   hypothetical protein LOC283991 
KCNH3                 0.021   potassium voltage-gated channel, subfamily H (eag-re...
RTN4                  0.021   reticulon 4 isoform D 
RTN4                  0.021   reticulon 4 isoform A 
LOC100293578          0.021   PREDICTED: hypothetical protein 
LOC100290886          0.021   PREDICTED: hypothetical protein XP_002346949 
LOC100286960          0.021   PREDICTED: hypothetical protein XP_002342813 
LOC100286960          0.021   PREDICTED: hypothetical protein 
PLEKHA4               0.021   pleckstrin homology domain containing family A memb...
PLEKHA4               0.021   pleckstrin homology domain containing family A memb...
KIAA0323              0.018   hypothetical protein LOC23351 
LMOD2                 0.018   leiomodin 2 (cardiac) 
CXorf49               0.015   hypothetical protein LOC100130361 
CXorf49B              0.015   hypothetical protein LOC100132994 
RTN4                  0.015   reticulon 4 isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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