Guide to the Human Genome
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Name: SYT7 Sequence: fasta or formatted (403aa) NCBI GI: 38570146
Description:

synaptotagmin VII

Referenced in:

ER, Golgi, and the Secretory Pathway
Synapses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         18           2
 C cysteine            1.5          6           1
 D aspartate           6.0         24           1
 E glutamate           6.0         24           2
 F phenylalanine       3.0         12           1
 G glycine             6.0         24           2
 H histidine           1.7          7           1
 I isoleucine          5.5         22           3
 K lysine              9.4         38           3
 L leucine             9.2         37           3
 M methionine          2.5         10           1
 N asparagine          4.5         18           1
 P proline             6.2         25           1
 Q glutamine           3.0         12           1
 R arginine            5.7         23           2
 S serine              8.4         34           2
 T threonine           5.5         22           2
 V valine              7.2         29           2
 W tryptophan          1.7          7           1
 Y tyrosine            2.7         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptotagmin VII 
SYT2                  0.339   synaptotagmin II 
SYT2                  0.339   synaptotagmin II 
SYT1                  0.334   synaptotagmin I 
SYT1                  0.334   synaptotagmin I 
SYT1                  0.334   synaptotagmin I 
SYT5                  0.306   synaptotagmin V 
SYT6                  0.298   synaptotagmin VI 
SYT10                 0.285   synaptotagmin X 
SYT9                  0.280   synaptotagmin IX 
SYT4                  0.262   synaptotagmin IV 
SYT3                  0.260   synaptotagmin III 
SYT3                  0.260   synaptotagmin III 
SYT3                  0.260   synaptotagmin III 
SYT11                 0.256   synaptotagmin XI 
SYT17                 0.237   B/K protein 
DOC2A                 0.193   double C2-like domains, alpha 
DOC2B                 0.190   double C2-like domains, beta 
RPH3A                 0.185   rabphilin 3A homolog isoform 1 
RPH3A                 0.185   rabphilin 3A homolog isoform 2 
SYT8                  0.172   synaptotagmin VIII 
SYT15                 0.161   synaptotagmin XV isoform a 
SYT12                 0.142   synaptotagmin XII 
SYTL4                 0.134   synaptotagmin-like 4 
SYTL4                 0.134   synaptotagmin-like 4 
SYT15                 0.134   synaptotagmin XV isoform b 
SYT13                 0.125   synaptotagmin XIII 
LOC390213             0.113   PREDICTED: hypothetical protein LOC390213 
SYTL1                 0.113   synaptotagmin-like 1 
SYT14                 0.100   synaptotagmin XIV isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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