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Search of human proteins with 31563374
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31563374 eukaryotic translation initiation factor 6 isoform
c [Homo sapiens]
(226 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31563374 eukaryotic translation initiation factor 6 isoform c... 459 e-130
gi|31563378 eukaryotic translation initiation factor 6 isoform a... 270 6e-73
gi|4504771 eukaryotic translation initiation factor 6 isoform a ... 270 6e-73
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 33 0.26
gi|126090883 aggrecan isoform 1 precursor [Homo sapiens] 33 0.26
gi|5453629 dynactin 2 [Homo sapiens] 32 0.34
gi|239755134 PREDICTED: hypothetical protein [Homo sapiens] 32 0.44
gi|239749639 PREDICTED: hypothetical protein [Homo sapiens] 32 0.44
gi|239743912 PREDICTED: hypothetical protein XP_002342972 [Homo ... 32 0.44
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 32 0.44
gi|51972220 keratin associated protein 5-2 [Homo sapiens] 32 0.44
gi|115430241 SCY1-like 1 isoform A [Homo sapiens] 31 0.75
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 31 0.98
gi|188595670 choline acetyltransferase isoform 2 [Homo sapiens] 30 1.3
gi|31077092 neurogenin 2 [Homo sapiens] 30 1.3
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 30 1.7
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 30 1.7
gi|24497501 forkhead box A1 [Homo sapiens] 30 2.2
gi|239752912 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|131412228 keratin 13 isoform b [Homo sapiens] 30 2.2
gi|131412225 keratin 13 isoform a [Homo sapiens] 30 2.2
gi|30387650 late cornified envelope 1E [Homo sapiens] 30 2.2
gi|55956899 keratin 9 [Homo sapiens] 29 2.9
gi|38045944 ubiquitin-activating enzyme 3 isoform 2 [Homo sapiens] 29 2.9
gi|38045942 ubiquitin-activating enzyme 3 isoform 1 [Homo sapiens] 29 2.9
gi|13994190 frizzled 8 [Homo sapiens] 29 2.9
gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 29 2.9
gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens] 29 2.9
gi|27735089 LSM11, U7 small nuclear RNA associated [Homo sapiens] 29 2.9
gi|197333868 T-box 2 [Homo sapiens] 29 3.7
>gi|31563374 eukaryotic translation initiation factor 6 isoform c
[Homo sapiens]
Length = 226
Score = 459 bits (1182), Expect = e-130
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYRCGGSPGAYGGGEACAGVKSSGSGR 60
MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYRCGGSPGAYGGGEACAGVKSSGSGR
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYRCGGSPGAYGGGEACAGVKSSGSGR 60
Query: 61 VPAPLPRHHRVHVPTVCSRASSPIPSPWCTRLSPAAASSGACVWETEEILADVLKVEVFR 120
VPAPLPRHHRVHVPTVCSRASSPIPSPWCTRLSPAAASSGACVWETEEILADVLKVEVFR
Sbjct: 61 VPAPLPRHHRVHVPTVCSRASSPIPSPWCTRLSPAAASSGACVWETEEILADVLKVEVFR 120
Query: 121 QTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVV 180
QTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVV
Sbjct: 121 QTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVV 180
Query: 181 NDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDSLT 226
NDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDSLT
Sbjct: 181 NDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDSLT 226
>gi|31563378 eukaryotic translation initiation factor 6 isoform a
[Homo sapiens]
Length = 245
Score = 270 bits (691), Expect = 6e-73
Identities = 167/259 (64%), Positives = 175/259 (67%), Gaps = 47/259 (18%)
Query: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYRCGGSPGAYGGGE------------ 48
MAVRASFENNCEIGCFAKLTNTYCLVAI GGS Y E
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAI---------GGSENFYSVFEGELSDTIPVVHA 51
Query: 49 ACAGVKSSGSGRVPAPLPRHHRVHVPTVCS-------RASSPIPSPWCTRLSPAAASSGA 101
+ AG + G V H + VP + R S P + R+ ++ G
Sbjct: 52 SIAGCRIIGRMCVG----NRHGLLVPNNTTDQELQHIRNSLP-DTVQIRRVEERLSALGN 106
Query: 102 CVW--------------ETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTS 147
ETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTS
Sbjct: 107 VTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTS 166
Query: 148 IEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNE 207
IEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNE
Sbjct: 167 IEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNE 226
Query: 208 AQPSTIATSMRDSLIDSLT 226
AQPSTIATSMRDSLIDSLT
Sbjct: 227 AQPSTIATSMRDSLIDSLT 245
>gi|4504771 eukaryotic translation initiation factor 6 isoform a
[Homo sapiens]
Length = 245
Score = 270 bits (691), Expect = 6e-73
Identities = 167/259 (64%), Positives = 175/259 (67%), Gaps = 47/259 (18%)
Query: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYRCGGSPGAYGGGE------------ 48
MAVRASFENNCEIGCFAKLTNTYCLVAI GGS Y E
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAI---------GGSENFYSVFEGELSDTIPVVHA 51
Query: 49 ACAGVKSSGSGRVPAPLPRHHRVHVPTVCS-------RASSPIPSPWCTRLSPAAASSGA 101
+ AG + G V H + VP + R S P + R+ ++ G
Sbjct: 52 SIAGCRIIGRMCVG----NRHGLLVPNNTTDQELQHIRNSLP-DTVQIRRVEERLSALGN 106
Query: 102 CVW--------------ETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTS 147
ETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTS
Sbjct: 107 VTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTS 166
Query: 148 IEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNE 207
IEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNE
Sbjct: 167 IEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNE 226
Query: 208 AQPSTIATSMRDSLIDSLT 226
AQPSTIATSMRDSLIDSLT
Sbjct: 227 AQPSTIATSMRDSLIDSLT 245
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 32.7 bits (73), Expect = 0.26
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 61 VPAPLPRHHRVHVPTVCSRASSPIPSPWCTRLSPAAASSGACVWETEEILADVLKVEVFR 120
+P PL RHH C R S +PSP + SG W +++ V V V
Sbjct: 662 LPDPLSRHH-----AFCFRGISAVPSPGEEEGGTPTSPSGVEEWIVTQVVPGVAAVPVEE 716
Query: 121 QTVA 124
+T A
Sbjct: 717 ETTA 720
>gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]
Length = 2317
Score = 32.7 bits (73), Expect = 0.26
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 61 VPAPLPRHHRVHVPTVCSRASSPIPSPWCTRLSPAAASSGACVWETEEILADVLKVEVFR 120
+P PL RHH C R S +PSP + SG W +++ V V V
Sbjct: 662 LPDPLSRHH-----AFCFRGISAVPSPGEEEGGTPTSPSGVEEWIVTQVVPGVAAVPVEE 716
Query: 121 QTVA 124
+T A
Sbjct: 717 ETTA 720
>gi|5453629 dynactin 2 [Homo sapiens]
Length = 406
Score = 32.3 bits (72), Expect = 0.34
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 95 AAASSGACVWETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDEL 154
+A GAC+ ET E+L KV V DQV V + K S+ED D
Sbjct: 254 SAGLQGACLMETVELLQ--AKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASVEDADTQ 311
Query: 155 SSLLQV 160
S + Q+
Sbjct: 312 SKVHQL 317
>gi|239755134 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 32.0 bits (71), Expect = 0.44
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 19/93 (20%)
Query: 30 GSENFYRCGGSPGAYGGGEACAGVKSSGSGRV-PA------PLPR---HHRVHV------ 73
GS R G SPGA G+ C R+ PA P P+ HH + +
Sbjct: 83 GSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQVFIHHLISLFPFSFS 142
Query: 74 ---PTVCSRASSPIPSPWCTRLSPAAASSGACV 103
+ S +SS PS T S AAA+S +C+
Sbjct: 143 FASFSFASFSSSSSPSSTTTSSSSAAATSSSCI 175
>gi|239749639 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 32.0 bits (71), Expect = 0.44
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 19/93 (20%)
Query: 30 GSENFYRCGGSPGAYGGGEACAGVKSSGSGRV-PA------PLPR---HHRVHV------ 73
GS R G SPGA G+ C R+ PA P P+ HH + +
Sbjct: 83 GSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQVFIHHLISLFPFSFS 142
Query: 74 ---PTVCSRASSPIPSPWCTRLSPAAASSGACV 103
+ S +SS PS T S AAA+S +C+
Sbjct: 143 FASFSFASFSSSSSPSSTTTSSSSAAATSSSCI 175
>gi|239743912 PREDICTED: hypothetical protein XP_002342972 [Homo
sapiens]
Length = 180
Score = 32.0 bits (71), Expect = 0.44
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 19/93 (20%)
Query: 30 GSENFYRCGGSPGAYGGGEACAGVKSSGSGRV-PA------PLPR---HHRVHV------ 73
GS R G SPGA G+ C R+ PA P P+ HH + +
Sbjct: 83 GSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPAAALLAPPSPQVFIHHLISLFPFSFS 142
Query: 74 ---PTVCSRASSPIPSPWCTRLSPAAASSGACV 103
+ S +SS PS T S AAA+S +C+
Sbjct: 143 FASFSFASFSSSSSPSSTTTSSSSAAATSSSCI 175
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 32.0 bits (71), Expect = 0.44
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 29 GGSENFYRCGGSPGAYGGGEACAGVKSSGSGRVPAPLPRHHRVHVPTVCSRASS 82
GGS G G GG +C G S+ R P+ +P+ R H P + S A+S
Sbjct: 2306 GGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSR-PSRIPQPVRHHPPVLVSSAAS 2358
>gi|51972220 keratin associated protein 5-2 [Homo sapiens]
Length = 177
Score = 32.0 bits (71), Expect = 0.44
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 37 CGGSPGAYGG-GEACAGVKSSGSGRVPAPLPRHHRVHVPTVCSR-ASSPIPSPWCTRLSP 94
CGG GG G C G SS G R +VP C + S +P+ CT
Sbjct: 28 CGGCGSGRGGCGSGCGGCSSSCGGC-------GSRCYVPVCCCKPVCSWVPACSCTSCGS 80
Query: 95 AAASSGAC 102
S G C
Sbjct: 81 CGGSKGGC 88
>gi|115430241 SCY1-like 1 isoform A [Homo sapiens]
Length = 808
Score = 31.2 bits (69), Expect = 0.75
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 32 ENFYRCGGSPGAYGGGEACAGVKSSGSGRVPAPLPRHHRVHVPTVCSRASSP----IPSP 87
E SPG G + AG +G + + L R H PT + P +P+P
Sbjct: 551 EKDVHAASSPGMGGAAASWAGWAVTGVSSLTSKLIRSHPTTAPTETNIPQRPTPEGVPAP 610
Query: 88 WCTRLSPAAASSGACVWETEE 108
T + +SG WET+E
Sbjct: 611 APTPVPATPTTSGH--WETQE 629
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 30.8 bits (68), Expect = 0.98
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 49 ACAGVKSSGSGRVPAPLPRHHRVHVPTVCSRASSPIPSPWCTRLSPAAASSGAC 102
+CAG S G APL + R C ++P P+P C SP+AA+S C
Sbjct: 167 SCAGAAWSARG---APLCSY-RTSCAGSCGARTAPTPAPTCA--SPSAAASSCC 214
>gi|188595670 choline acetyltransferase isoform 2 [Homo sapiens]
Length = 748
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 39 GSPGAYGGGEACAGVKSSGSGRV-PAPLPRHHRVHVPTVCSRASSPIPSP 87
G PG GG G P PLP H H P C AS+ P
Sbjct: 43 GDPGDVGGPAGNPGCSPHPRAATRPPPLPAHTPAHTPEWCGAASAEAAEP 92
>gi|31077092 neurogenin 2 [Homo sapiens]
Length = 272
Score = 30.4 bits (67), Expect = 1.3
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 38 GGSPGAY-------GGGEACAGVKSSGSGRVPAPLPRHHRVHVPTVCSRASSPIPSPWCT 90
GG PGA G A A + SSG P+P + P S SS SP+
Sbjct: 179 GGLPGALFSEAVLLSPGGASAALSSSGDS--PSPASTWSCTNSPAPSSSVSSNSTSPYSC 236
Query: 91 RLSPAA-ASSGACVWE 105
LSPA+ A S W+
Sbjct: 237 TLSPASPAGSDMDYWQ 252
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 39 GSPGAYGGGEACAGVKSSG---SGRVPAPLPRHHRVHVPTVCSRASSPIPSPWCTRLSPA 95
G+ GA G + +G+ SS S +P H H+P + + SP+ SP S +
Sbjct: 652 GTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRS 711
Query: 96 AASSGACV 103
S A V
Sbjct: 712 GPLSPAAV 719
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 39 GSPGAYGGGEACAGVKSSG---SGRVPAPLPRHHRVHVPTVCSRASSPIPSPWCTRLSPA 95
G+ GA G + +G+ SS S +P H H+P + + SP+ SP S +
Sbjct: 652 GTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRS 711
Query: 96 AASSGACV 103
S A V
Sbjct: 712 GPLSPAAV 719
>gi|24497501 forkhead box A1 [Homo sapiens]
Length = 472
Score = 29.6 bits (65), Expect = 2.2
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 35 YRCGGSPGAYGGGEACAGVKS-----------SGSGRVPAPLPRHHRVHVPT---VCSRA 80
++C PGA GGG + +G SG+ A P H VH T + A
Sbjct: 266 FKCEKQPGAGGGGGSGSGGSGAKGGPESRKDPSGASNPSADSPLHRGVHGKTGQLEGAPA 325
Query: 81 SSPIPSPWCTRLSPAAASSGACVWET 106
P SP S A A+ GA +T
Sbjct: 326 PGPAASPQTLDHSGATATGGASELKT 351
>gi|239752912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 118
Score = 29.6 bits (65), Expect = 2.2
Identities = 26/81 (32%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 24 CLVAIGGSENFYRCGGSPGAYGGGEACAGVKSSGSGRVPAPLPRHHRV--HVPTVCSRAS 81
C V+ GG CG S G G + G SSG G RHHR H P S
Sbjct: 44 CSVSSGGC-----CGSSSGG-SCGSSSGGCCSSGGGGCCLSHHRHHRSHRHRPQSSDCCS 97
Query: 82 SPIPSPWCTRLSPAAASSGAC 102
P C S G C
Sbjct: 98 QPSGGSSCCGGGSGQHSGGCC 118
>gi|131412228 keratin 13 isoform b [Homo sapiens]
Length = 420
Score = 29.6 bits (65), Expect = 2.2
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 28 IGGSENFYRC------GGSPGAYGGGEACAGVKSSGSG 59
+GG C GGS G YGGG +C +GSG
Sbjct: 23 LGGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSG 60
>gi|131412225 keratin 13 isoform a [Homo sapiens]
Length = 458
Score = 29.6 bits (65), Expect = 2.2
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 28 IGGSENFYRC------GGSPGAYGGGEACAGVKSSGSG 59
+GG C GGS G YGGG +C +GSG
Sbjct: 23 LGGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSG 60
>gi|30387650 late cornified envelope 1E [Homo sapiens]
Length = 118
Score = 29.6 bits (65), Expect = 2.2
Identities = 26/81 (32%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 24 CLVAIGGSENFYRCGGSPGAYGGGEACAGVKSSGSGRVPAPLPRHHRV--HVPTVCSRAS 81
C V+ GG CG S G G + G SSG G RHHR H P S
Sbjct: 44 CSVSSGGC-----CGSSSGG-SCGSSSGGCCSSGGGGCCLSHHRHHRSHRHRPQSSDCCS 97
Query: 82 SPIPSPWCTRLSPAAASSGAC 102
P C S G C
Sbjct: 98 QPSGGSSCCGGGSGQHSGGCC 118
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 29 GGSENFYRCGGSPGAYGGGEACAGVKSSGSG 59
GGS Y GGS G YGGG G GSG
Sbjct: 491 GGSGGSYGGGGSGGGYGGGSGSRG----GSG 517
>gi|38045944 ubiquitin-activating enzyme 3 isoform 2 [Homo sapiens]
Length = 449
Score = 29.3 bits (64), Expect = 2.9
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 91 RLSPAAASSGACVWETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIED 150
R+ PA AS+ A ++A V EVF+ + + + +Y VF++ GL E
Sbjct: 294 RIIPAVASTNA-------VIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAER 346
Query: 151 QDELSSLLQVP 161
++ + Q+P
Sbjct: 347 KENCPACSQLP 357
>gi|38045942 ubiquitin-activating enzyme 3 isoform 1 [Homo sapiens]
Length = 463
Score = 29.3 bits (64), Expect = 2.9
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 91 RLSPAAASSGACVWETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIED 150
R+ PA AS+ A ++A V EVF+ + + + +Y VF++ GL E
Sbjct: 308 RIIPAVASTNA-------VIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAER 360
Query: 151 QDELSSLLQVP 161
++ + Q+P
Sbjct: 361 KENCPACSQLP 371
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 15 CFAKLTNTYCLVAIGGSENFYRCGGSPG---AYGGGEACAGVKSSGSG 59
C+ ++ Y + + G E GG+PG A G G A AG ++G+G
Sbjct: 319 CYLFVSVGYLVRLVAGHEKVACSGGAPGAGGAGGAGGAAAGAGAAGAG 366
>gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene
homolog A [Homo sapiens]
Length = 353
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 37 CGGSPGAYGGGEACAGVKSSGSGRVPAP 64
C SPG GGG A G SS +G P P
Sbjct: 69 CAPSPGTGGGGGAGGGGGSSQAGGAPGP 96
>gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens]
Length = 1104
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 29 GGSENFYRCGGSPGAYGGGEACAGVKSSGSGRVPAPLPRHHRVH 72
GG+ + C + A GG CA ++ + PA HH H
Sbjct: 293 GGAASGGACSAASSASGGSSCCAPPAAAAAAVPPAAAANHHHHH 336
>gi|27735089 LSM11, U7 small nuclear RNA associated [Homo sapiens]
Length = 360
Score = 29.3 bits (64), Expect = 2.9
Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 21 NTYCLVAIGGSENFYRCGGSPGAYGGGEACAGVKSSGSGRVPAPLPRHHRVHVPTVCSRA 80
N C + E+F R G G G G A SG P P R R R
Sbjct: 49 NAPCFNNVAEYESFLRTGVRGGGRGRGRARGAAAGSGVPAAPGPSGRTRR--------RP 100
Query: 81 SSPIPSP 87
+P P P
Sbjct: 101 DAPAPDP 107
>gi|197333868 T-box 2 [Homo sapiens]
Length = 712
Score = 28.9 bits (63), Expect = 3.7
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 14 GCFAKLTNTYCLVAIGGSENFYRCGGSPGAYGGGEACAGVKSSGSGRVPAPLPRHHRVHV 73
G F+ + + L ++ G N GG PG G +A ++ + AP P H H+
Sbjct: 501 GAFSAMGMGHLLASVAGGGN--GGGGGPGTAAGLDAGGLGPAASAASTAAPFPFHLSQHM 558
Query: 74 PTVCSRASSPIPSPWCTRLSP------AAASSGA 101
AS IP P L P AAA++ A
Sbjct: 559 -----LASQGIPMPTFGGLFPYPYTYMAAAAAAA 587
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,895,218
Number of Sequences: 37866
Number of extensions: 452206
Number of successful extensions: 2036
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1948
Number of HSP's gapped (non-prelim): 117
length of query: 226
length of database: 18,247,518
effective HSP length: 99
effective length of query: 127
effective length of database: 14,498,784
effective search space: 1841345568
effective search space used: 1841345568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.