Guide to the Human Genome
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Name: LOC100288311 Sequence: fasta or formatted (180aa) NCBI GI: 239743912
Description:

PREDICTED: hypothetical protein XP_002342972

Not currently referenced in the text

Other entries for this name:
alt mRNA {180aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         21           3
 C cysteine            2.2          4           1
 D aspartate           2.2          4           1
 E glutamate           1.7          3           1
 F phenylalanine       6.7         12           1
 G glycine             8.3         15           1
 H histidine           2.8          5           2
 I isoleucine          2.8          5           1
 K lysine              2.2          4           2
 L leucine             9.4         17           2
 M methionine          1.7          3           1
 N asparagine          1.1          2           1
 P proline             7.8         14           2
 Q glutamine           3.3          6           1
 R arginine            6.7         12           2
 S serine             18.9         34           5
 T threonine           3.9          7           3
 V valine              3.9          7           2
 W tryptophan          1.7          3           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342972 
LOC100292958          1.000   PREDICTED: hypothetical protein 
LOC100288311          1.000   PREDICTED: hypothetical protein 
TNRC18                0.045   trinucleotide repeat containing 18 
LOC100131251          0.042   PREDICTED: hypothetical protein 
LOC100131251          0.042   PREDICTED: hypothetical protein 
SRRM2                 0.039   splicing coactivator subunit SRm300 
MLLT3                 0.036   myeloid/lymphoid or mixed-lineage leukemia (trithor...
TMPRSS13              0.036   transmembrane protease, serine 13 
ATN1                  0.033   atrophin-1 
ATN1                  0.033   atrophin-1 
RSBN1L                0.030   round spermatid basic protein 1-like 
LOC100134320          0.030   PREDICTED: hypothetical protein 
MEX3B                 0.030   mex-3 homolog B 
CECR6                 0.027   cat eye syndrome chromosome region, candidate 6 isof...
LOC100290265          0.027   PREDICTED: hypothetical protein XP_002346787 
LOC100130897          0.027   PREDICTED: hypothetical protein 
LOC100130897          0.027   PREDICTED: hypothetical protein 
DACH1                 0.024   dachshund homolog 1 isoform b 
DACH1                 0.024   dachshund homolog 1 isoform a 
DACH1                 0.024   dachshund homolog 1 isoform c 
LOC100292195          0.024   PREDICTED: similar to hCG2038535 
LOC100287432          0.024   PREDICTED: similar to hCG2038535 
LOC100287432          0.024   PREDICTED: hypothetical protein XP_002344130 
SHANK3                0.024   SH3 and multiple ankyrin repeat domains 3 
INTS12                0.024   integrator complex subunit 12 
INTS12                0.024   integrator complex subunit 12 
MLX                   0.024   transcription factor-like protein 4 isoform gamma [H...
FRMPD3                0.024   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.024   PREDICTED: FERM and PDZ domain containing 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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