Guide to the Human Genome
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Name: EIF6 Sequence: fasta or formatted (245aa) NCBI GI: 4504771
Description:

eukaryotic translation initiation factor 6 isoform a

Referenced in:

Integrins
Translation Factors

Other entries for this name:
alt prot [226aa] eukaryotic translation initiation factor 6 isoform c
alt mRNA [245aa] eukaryotic translation initiation factor 6 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         16           2
 C cysteine            3.7          9           1
 D aspartate           5.7         14           1
 E glutamate           7.3         18           2
 F phenylalanine       3.3          8           1
 G glycine             6.5         16           2
 H histidine           2.0          5           1
 I isoleucine          5.3         13           2
 K lysine              1.6          4           1
 L leucine             9.8         24           2
 M methionine          1.6          4           1
 N asparagine          5.7         14           2
 P proline             2.9          7           1
 Q glutamine           3.7          9           1
 R arginine            4.9         12           2
 S serine              8.2         20           2
 T threonine           7.3         18           2
 V valine             11.8         29           2
 W tryptophan          0.4          1           1
 Y tyrosine            1.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   eukaryotic translation initiation factor 6 isoform a ... 
EIF6                  1.000   eukaryotic translation initiation factor 6 isoform a...
EIF6                  0.530   eukaryotic translation initiation factor 6 isoform c...
BICD2                 0.015   bicaudal D homolog 2 isoform 1 
BICD2                 0.015   bicaudal D homolog 2 isoform 2 
TPM4                  0.011   tropomyosin 4 isoform 1 
KIF26B                0.011   kinesin family member 26B 
TPM4                  0.009   tropomyosin 4 isoform 2 
TPM3                  0.009   tropomyosin 3 isoform 1 
FBXW5                 0.009   F-box and WD repeat domain containing 5 
HYDIN                 0.009   hydrocephalus inducing isoform a 
LAMC1                 0.006   laminin, gamma 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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