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Search of human proteins with 31542835
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31542835 galactose-3-O-sulfotransferase 4 [Homo sapiens]
(486 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31542835 galactose-3-O-sulfotransferase 4 [Homo sapiens] 993 0.0
gi|124256491 galactose-3-O-sulfotransferase 2 [Homo sapiens] 260 2e-69
gi|4758088 galactose-3-O-sulfotransferase 1 [Homo sapiens] 225 8e-59
gi|14719426 galactose-3-O-sulfotransferase 3 [Homo sapiens] 184 1e-46
gi|148727370 immediate early response 5-like [Homo sapiens] 37 0.031
gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 34 0.34
gi|209862881 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 34 0.34
gi|217035102 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 34 0.34
gi|239753102 PREDICTED: hypothetical protein [Homo sapiens] 33 0.58
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens] 32 0.99
gi|239751740 PREDICTED: hypothetical protein [Homo sapiens] 32 0.99
gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ... 32 0.99
gi|46852390 coiled-coil domain containing 6 [Homo sapiens] 32 0.99
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 32 1.3
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 32 1.3
gi|239741279 PREDICTED: similar to FLJ00310 protein [Homo sapiens] 32 1.7
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 31 2.2
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 30 3.8
gi|224282119 splicing factor, arginine/serine-rich 14 [Homo sapi... 30 3.8
gi|224282117 splicing factor, arginine/serine-rich 14 [Homo sapi... 30 3.8
gi|239754195 PREDICTED: hypothetical protein [Homo sapiens] 30 4.9
gi|239748723 PREDICTED: hypothetical protein XP_002346783 [Homo ... 30 4.9
gi|239742758 PREDICTED: hypothetical protein XP_002342618 [Homo ... 30 4.9
gi|218563739 hypothetical protein LOC124944 isoform 3 [Homo sapi... 30 4.9
gi|239740767 PREDICTED: hypothetical protein [Homo sapiens] 30 6.4
gi|116292174 fidgetin-like 2 [Homo sapiens] 30 6.4
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 30 6.4
gi|46276868 hypothetical protein LOC9710 [Homo sapiens] 30 6.4
gi|24497460 Shaw-related voltage-gated potassium channel protein... 29 8.4
gi|122937193 DNB5 [Homo sapiens] 29 8.4
>gi|31542835 galactose-3-O-sulfotransferase 4 [Homo sapiens]
Length = 486
Score = 993 bits (2568), Expect = 0.0
Identities = 486/486 (100%), Positives = 486/486 (100%)
Query: 1 MGPLSPARTLRLWGPRSLGVALGVFMTIGFALQLLGGPFQRRLPGLQLRQPSAPSLRPAL 60
MGPLSPARTLRLWGPRSLGVALGVFMTIGFALQLLGGPFQRRLPGLQLRQPSAPSLRPAL
Sbjct: 1 MGPLSPARTLRLWGPRSLGVALGVFMTIGFALQLLGGPFQRRLPGLQLRQPSAPSLRPAL 60
Query: 61 PSCPPRQRLVFLKTHKSGSSSVLSLLHRYGDQHGLRFALPARYQFGYPKLFQASRVKGYR 120
PSCPPRQRLVFLKTHKSGSSSVLSLLHRYGDQHGLRFALPARYQFGYPKLFQASRVKGYR
Sbjct: 61 PSCPPRQRLVFLKTHKSGSSSVLSLLHRYGDQHGLRFALPARYQFGYPKLFQASRVKGYR 120
Query: 121 PQGGGTQLPFHILCHHMRFNLKEVLQVMPSDSFFFSIVRDPAALARSAFSYYKSTSSAFR 180
PQGGGTQLPFHILCHHMRFNLKEVLQVMPSDSFFFSIVRDPAALARSAFSYYKSTSSAFR
Sbjct: 121 PQGGGTQLPFHILCHHMRFNLKEVLQVMPSDSFFFSIVRDPAALARSAFSYYKSTSSAFR 180
Query: 181 KSPSLAAFLANPRGFYRPGARGDHYARNLLWFDFGLPFPPEKRAKRGNIHPPRDPNPPQL 240
KSPSLAAFLANPRGFYRPGARGDHYARNLLWFDFGLPFPPEKRAKRGNIHPPRDPNPPQL
Sbjct: 181 KSPSLAAFLANPRGFYRPGARGDHYARNLLWFDFGLPFPPEKRAKRGNIHPPRDPNPPQL 240
Query: 241 QVLPSGAGPRAQTLNPNALIHPVSTVTDHRSQISSPASFDLGSSSFIQWGLAWLDSVFDL 300
QVLPSGAGPRAQTLNPNALIHPVSTVTDHRSQISSPASFDLGSSSFIQWGLAWLDSVFDL
Sbjct: 241 QVLPSGAGPRAQTLNPNALIHPVSTVTDHRSQISSPASFDLGSSSFIQWGLAWLDSVFDL 300
Query: 301 VMVAEYFDESLVLLADALCWGLDDVVGFMHNAQAGHKQGLSTVSNSGLTAEDRQLTARAR 360
VMVAEYFDESLVLLADALCWGLDDVVGFMHNAQAGHKQGLSTVSNSGLTAEDRQLTARAR
Sbjct: 301 VMVAEYFDESLVLLADALCWGLDDVVGFMHNAQAGHKQGLSTVSNSGLTAEDRQLTARAR 360
Query: 361 AWNNLDWALYVHFNRSLWARIEKYGQGRLQTAVAELRARREALAKHCLVGGEASDPKYIT 420
AWNNLDWALYVHFNRSLWARIEKYGQGRLQTAVAELRARREALAKHCLVGGEASDPKYIT
Sbjct: 361 AWNNLDWALYVHFNRSLWARIEKYGQGRLQTAVAELRARREALAKHCLVGGEASDPKYIT 420
Query: 421 DRRFRPFQFGSAKVLGYILRSGLSPQDQEECERLATPELQYKDKLDAKQFPPTVSLPLKT 480
DRRFRPFQFGSAKVLGYILRSGLSPQDQEECERLATPELQYKDKLDAKQFPPTVSLPLKT
Sbjct: 421 DRRFRPFQFGSAKVLGYILRSGLSPQDQEECERLATPELQYKDKLDAKQFPPTVSLPLKT 480
Query: 481 SRPLSP 486
SRPLSP
Sbjct: 481 SRPLSP 486
>gi|124256491 galactose-3-O-sulfotransferase 2 [Homo sapiens]
Length = 398
Score = 260 bits (664), Expect = 2e-69
Identities = 168/421 (39%), Positives = 226/421 (53%), Gaps = 82/421 (19%)
Query: 64 PPRQRLVFLKTHKSGSSSVLSLLHRYGDQHGLRFALPA--RYQFGYPKLFQASRVKGYRP 121
PP ++FLKTHK+ SS+VL++L+R+ + H L ALPA R GYP LF A V+G
Sbjct: 49 PPVTNIMFLKTHKTASSTVLNILYRFAETHNLSVALPAGSRVHLGYPWLFLARYVEGV-- 106
Query: 122 QGGGTQLPFHILCHHMRFNLKEVLQVMPSDSFFFSIVRDPAALARSAFSYYKSTSSAFRK 181
G+Q F+I+C+H+RFNL +V +VMP+D+F+FSI+R+P S+F YYK+ + AFR
Sbjct: 107 ---GSQQRFNIMCNHLRFNLPQVQKVMPNDTFYFSILRNPVFQLESSFIYYKTYAPAFRG 163
Query: 182 SPSLAAFLANPRGFYRPGAR-GDHYARNLLWFDFGLPFPPEKRAKRGNIHPPRDPNPPQL 240
+PSL AFLA+PR FY + YA+N +WFDF
Sbjct: 164 APSLDAFLASPRTFYNDSRHLRNVYAKNNMWFDF-------------------------- 197
Query: 241 QVLPSGAGPRAQTLNPNALIHPVSTVTDHRSQISSPASFDLGSSSFIQWGLAWLDSVFDL 300
G P AQ +++ +A ++ F L
Sbjct: 198 -----GFDPNAQC-----------------------------EEGYVRARIAEVERRFRL 223
Query: 301 VMVAEYFDESLVLLADALCWGLDDVVGFMHNAQAGHKQGLSTVSNSGLTAEDRQLTARAR 360
V++AE+ DESLVLL L W LDDVV F N+++ S + L+ E R+ RAR
Sbjct: 224 VLIAEHLDESLVLLRRRLRWALDDVVAFRLNSRSAR-------SVARLSPETRE---RAR 273
Query: 361 AWNNLDWALYVHFNRSLWARIE-KYGQGRLQTAVAELRARREALAKHCLV-GGEASDPKY 418
+W LDW LY HFNR+LWA++ + G RL+ V LRARR LA CL GG +
Sbjct: 274 SWCALDWRLYEHFNRTLWAQLRAELGPRRLRGEVERLRARRRELASLCLQDGGALKNHTQ 333
Query: 419 ITDRRFRPFQFGSAKVLGYILRSGLSPQDQEECERLATPELQYKDKLDAKQFP--PTVSL 476
I D R RP+Q G A +LGY LR GL Q C+RL PELQY +L A QFP P ++
Sbjct: 334 IRDPRLRPYQSGKADILGYNLRPGLDNQTLGVCQRLVMPELQYMARLYALQFPEKPLKNI 393
Query: 477 P 477
P
Sbjct: 394 P 394
>gi|4758088 galactose-3-O-sulfotransferase 1 [Homo sapiens]
Length = 423
Score = 225 bits (573), Expect = 8e-59
Identities = 156/474 (32%), Positives = 220/474 (46%), Gaps = 95/474 (20%)
Query: 13 WGPRSLGVALGVFMTIGFALQLLGGPFQRRLPGLQLRQPSA------PSLRP-------- 58
W + G+ LG T F L + GL P A P+L P
Sbjct: 9 WESMAKGLVLGALFT-SFLLLVYSYAVPPLHAGLASTTPEAAASCSPPALEPEAVIRANG 67
Query: 59 ALPSCPPRQRLVFLKTHKSGSSSVLSLLHRYGDQHGLRFALP-ARYQFGYPKLFQASRVK 117
+ C PR+ +VFLKTHK+ SS++L++L R+G +H L+FA P R F YP F S V+
Sbjct: 68 SAGECQPRRNIVFLKTHKTASSTLLNILFRFGQKHRLKFAFPNGRNDFDYPTFFARSLVQ 127
Query: 118 GYRPQGGGTQLPFHILCHHMRFNLKEVLQVMPSDSFFFSIVRDPAALARSAFSYYKSTSS 177
YRP F+I+C+HMRF+ EV ++P+++ F +++RDPA L S+F Y+
Sbjct: 128 DYRPGA-----CFNIICNHMRFHYDEVRGLVPTNAIFITVLRDPARLFESSFHYFGPVVP 182
Query: 178 AFRK---SPSLAAFLANPRGFYRPGARGDHYARNLLWFDFGLPFPPEKRAKRGNIHPPRD 234
K L FL +P +Y P HY RNLL+FD G D
Sbjct: 183 LTWKLSAGDKLTEFLQDPDRYYDPNGFNAHYLRNLLFFDLG-------------YDNSLD 229
Query: 235 PNPPQLQVLPSGAGPRAQTLNPNALIHPVSTVTDHRSQISSPASFDLGSSSFIQWGLAWL 294
P+ PQ+Q +H ++
Sbjct: 230 PSSPQVQ--------------------------EHILEV--------------------- 242
Query: 295 DSVFDLVMVAEYFDESLVLLADALCWGLDDVVGFMHNAQAGHKQGLSTVSNSGLTAEDRQ 354
+ F LV++ EYFDESLVLL D LCW L+DV+ F NA+ +S + +
Sbjct: 243 ERRFHLVLLQEYFDESLVLLKDLLCWELEDVLYFKLNAR----------RDSPVPRLSGE 292
Query: 355 LTARARAWNNLDWALYVHFNRSLWARIEKYGQGRLQTAVAELRARREALAKHCLVGGEAS 414
L RA AWN LD LY HFN S W ++E +G+ R+ VA LR E + C+ GG A
Sbjct: 293 LYGRATAWNMLDSHLYRHFNASFWRKVEAFGRERMAREVAALRHANERMRTICIDGGHAV 352
Query: 415 DPKYITDRRFRPFQ-FGSAKVLGYILRSGLSPQDQEECERLATPELQYKDKLDA 467
D I D +P+Q G+ +LGY L+ + + + C R+ TPE+QY L A
Sbjct: 353 DAAAIQDEAMQPWQPLGTKSILGYNLKKSIGQRHAQLCRRMLTPEIQYLMDLGA 406
>gi|14719426 galactose-3-O-sulfotransferase 3 [Homo sapiens]
Length = 431
Score = 184 bits (468), Expect = 1e-46
Identities = 134/422 (31%), Positives = 193/422 (45%), Gaps = 84/422 (19%)
Query: 58 PALPSCPPRQR---LVFLKTHKSGSSSVLSLLHRYGDQHGLRFALP---ARYQFGYPKLF 111
P L + PPR + + FLKTHK+ ++V ++L R+ ++H L ALP +QF YP+ F
Sbjct: 52 PPLRNSPPRPKHMTVAFLKTHKTAGTTVQNILFRFAERHNLTVALPHPSCEHQFCYPRNF 111
Query: 112 QASRVKGYRPQGGGTQLPFHILCHHMRFNLKEVLQVMPSDSFFFSIVRDPAALARSAFSY 171
A V P H+L H+RF+ E+ ++MP + + +I+R+PAA+ S FSY
Sbjct: 112 SAHFVHP-------ATRPPHVLASHLRFDRAELERLMPPSTVYVTILREPAAMFESLFSY 164
Query: 172 YKSTSSAFRKSP--SLAAFLANPRGFYRPGARGDHYARNLLWFDFGLPFPPEKRAKRGNI 229
Y AFR+ P SL AFL P +YR G +A N L +D G N
Sbjct: 165 YNQYCPAFRRVPNASLEAFLRAPEAYYRAGEHFAMFAHNTLAYDLG----------GDNE 214
Query: 230 HPPRDPNPPQLQVLPSGAGPRAQTLNPNALIHPVSTVTDHRSQISSPASFDLGSSSFIQW 289
PRD ++++
Sbjct: 215 RSPRD------------------------------------------------DAAYLAG 226
Query: 290 GLAWLDSVFDLVMVAEYFDESLVLLADALCWGLDDVVGFMHNAQAGHKQGLSTVSNSGLT 349
+ ++ VF LVM+AEYFDESLVLL L W LDDV+ NA+A ++S L
Sbjct: 227 LIRQVEEVFSLVMIAEYFDESLVLLRRLLAWDLDDVLYAKLNARA---------ASSRLA 277
Query: 350 AEDRQLTARARAWNNLDWALYVHFNRSLWARIEKYGQGRLQTAVAELRARREALAKHCLV 409
A L AR WN LD LY HFN + W + + G+ ++ ELR R+ L + C
Sbjct: 278 AIPAALARAARTWNALDAGLYDHFNATFWRHVARAGRACVEREARELREARQRLLRRCFG 337
Query: 410 GGEASDP-KYITDRRFRPFQ-FGSAKVLGYILRSGLSPQDQEECERLATPELQYKDKLDA 467
P I ++ +P+Q ++GY L G + E C +LA PE+QY + L
Sbjct: 338 DEPLLRPAAQIRTKQLQPWQPSRKVDIMGYDLPGGGAGPATEACLKLAMPEVQYSNYLLR 397
Query: 468 KQ 469
KQ
Sbjct: 398 KQ 399
>gi|148727370 immediate early response 5-like [Homo sapiens]
Length = 404
Score = 37.4 bits (85), Expect = 0.031
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 216 LPFPPEKRAKRGNIHPPRDPNPPQLQVLPSGAGPRAQTLNPNALIHPVSTVTDHRSQISS 275
LP PP A PRDP P P GA P A +P A P S+ +R +
Sbjct: 187 LPLPPPAPAALC----PRDPRAPAACSAPPGAAPPAAAASPPASPAPASSPGFYRGAYPT 242
Query: 276 PASFDLGSSS 285
P+ F L SS
Sbjct: 243 PSDFGLHCSS 252
>gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform 3
[Homo sapiens]
Length = 462
Score = 33.9 bits (76), Expect = 0.34
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 214 FGLPFPPEKRAKRGNIHPPRDPNPPQLQVLPSGAGPRAQTLNPNALIHPVSTV 266
FG+P PP ++ PP PP L V P GA P A LNP P +TV
Sbjct: 243 FGVP-PPPPGIHYQHLMPPPPRLPPHLAVPPPGAIPPALHLNPAFFPPPNATV 294
>gi|209862881 pre-mRNA cleavage factor I, 59 kDa subunit isoform 2
[Homo sapiens]
Length = 471
Score = 33.9 bits (76), Expect = 0.34
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 214 FGLPFPPEKRAKRGNIHPPRDPNPPQLQVLPSGAGPRAQTLNPNALIHPVSTV 266
FG+P PP ++ PP PP L V P GA P A LNP P +TV
Sbjct: 252 FGVP-PPPPGIHYQHLMPPPPRLPPHLAVPPPGAIPPALHLNPAFFPPPNATV 303
>gi|217035102 pre-mRNA cleavage factor I, 59 kDa subunit isoform 1
[Homo sapiens]
Length = 514
Score = 33.9 bits (76), Expect = 0.34
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 214 FGLPFPPEKRAKRGNIHPPRDPNPPQLQVLPSGAGPRAQTLNPNALIHPVSTV 266
FG+P PP ++ PP PP L V P GA P A LNP P +TV
Sbjct: 295 FGVP-PPPPGIHYQHLMPPPPRLPPHLAVPPPGAIPPALHLNPAFFPPPNATV 346
>gi|239753102 PREDICTED: hypothetical protein [Homo sapiens]
Length = 252
Score = 33.1 bits (74), Expect = 0.58
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 219 PPEKRAKRGNIHPPRDPNPPQLQVLPSGAGPRAQ----TLNPNALIHPVSTVTDHRSQIS 274
P + A+R + P PNP L + PS P+A+ + P +L +P T RS +
Sbjct: 107 PEDGLARRKDTEAPTFPNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGT---RRSAVP 163
Query: 275 SPASFDLGSSSFIQWG 290
S + G S +WG
Sbjct: 164 SWGARGWGGSEETRWG 179
>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 32.3 bits (72), Expect = 0.99
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 22 LGVFMTIGFALQLLGGPFQRRLPGLQLRQPSAPSLRPALPSCPPRQRLVFLKTHKSGSSS 81
LG T G + LG RR GLQLR S R A P+C Q + H +G++S
Sbjct: 397 LGAAKTPGAQGERLGPRGTRRARGLQLRPVGGQSRREAAPACSGPQP---CRPHGTGAAS 453
Query: 82 VLSL 85
L L
Sbjct: 454 SLGL 457
>gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 32.3 bits (72), Expect = 0.99
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 22 LGVFMTIGFALQLLGGPFQRRLPGLQLRQPSAPSLRPALPSCPPRQRLVFLKTHKSGSSS 81
LG T G + LG RR GLQLR S R A P+C Q + H +G++S
Sbjct: 397 LGAAKTPGAQGERLGPRGTRRARGLQLRPVGGQSRREAAPACSGPQP---CRPHGTGAAS 453
Query: 82 VLSL 85
L L
Sbjct: 454 SLGL 457
>gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
sapiens]
Length = 461
Score = 32.3 bits (72), Expect = 0.99
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 22 LGVFMTIGFALQLLGGPFQRRLPGLQLRQPSAPSLRPALPSCPPRQRLVFLKTHKSGSSS 81
LG T G + LG RR GLQLR S R A P+C Q + H +G++S
Sbjct: 397 LGAAKTPGAQGERLGPRGTRRARGLQLRPVGGQSRREAAPACSGPQP---CRPHGTGAAS 453
Query: 82 VLSL 85
L L
Sbjct: 454 SLGL 457
>gi|46852390 coiled-coil domain containing 6 [Homo sapiens]
Length = 474
Score = 32.3 bits (72), Expect = 0.99
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 161 PAALARSAFSYYKSTSSAFRKSPSL-AAFLANPRGFYRPGARGDHYARNLLWFDFGLPFP 219
P +L R+ SYY S P L + G RP R + F P P
Sbjct: 382 PTSLTRAGMSYYNS--------PGLHVQHMGTSHGITRPSPRRSNSPDK-----FKRPTP 428
Query: 220 PEKRAKRGNIHPPRDPNPPQLQ-VLPSGA 247
P + + PP P PP +Q +PS A
Sbjct: 429 PPSPNTQTPVQPPPPPPPPPMQPTVPSAA 457
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 32.0 bits (71), Expect = 1.3
Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 157 IVRDPAALARSAFSYYKSTSSAFRKSPSLAAFLANPRGFYRPG--ARGDHYARNLLWFDF 214
+V P A T+ F P L+ RG +P G + W +
Sbjct: 71 LVDTPPARRAGELCEAPQTAPGFHFQPFLSLSPHQERGRSKPSPPVSGTRRGKTGQWKEG 130
Query: 215 GLPFP---PEKRAKRGNIHPPRDPNPPQLQVLPSGAGPRAQTL-NPNALIHP 262
P P++ A R +H PR+P PP P GP Q+ P+A HP
Sbjct: 131 RGSHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPHPQSFRRPSA--HP 180
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 32.0 bits (71), Expect = 1.3
Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 157 IVRDPAALARSAFSYYKSTSSAFRKSPSLAAFLANPRGFYRPG--ARGDHYARNLLWFDF 214
+V P A T+ F P L+ RG +P G + W +
Sbjct: 71 LVDTPPARRAGELCEAPQTAPGFHFQPFLSLSPHQERGRSKPSPPVSGTRRGKTGQWKEG 130
Query: 215 GLPFP---PEKRAKRGNIHPPRDPNPPQLQVLPSGAGPRAQTL-NPNALIHP 262
P P++ A R +H PR+P PP P GP Q+ P+A HP
Sbjct: 131 RGSHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPHPQSFRRPSA--HP 180
>gi|239741279 PREDICTED: similar to FLJ00310 protein [Homo sapiens]
Length = 561
Score = 31.6 bits (70), Expect = 1.7
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 6/39 (15%)
Query: 447 DQEECERLATPELQYKDKLDAKQFPPTV---SLPLKTSR 482
D+EE ER E QYK +++AKQ PTV + LKT+R
Sbjct: 227 DREELER---KEKQYKKEVEAKQLEPTVQSLDMKLKTTR 262
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 31.2 bits (69), Expect = 2.2
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 228 NIHPPRDPNPPQLQVLP---SGAGPRAQTLNPNALIHPVSTVTDHRSQISSPASFDLGSS 284
N+HPPR P P Q +P SG+ P +L A + P + + ++ P + LGS+
Sbjct: 1053 NVHPPRGPLNPDSQRMPMQQSGSVPVMVSLQGPASVPP----SPDKQRMPMPVNTPLGSN 1108
Query: 285 S 285
S
Sbjct: 1109 S 1109
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 30.4 bits (67), Expect = 3.8
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 190 ANPRGFYRPGARGDHYARNLLWFDFGLPFPPEKRAKRGNIHPPRDPNPPQLQVLPSGAG 248
A P G PG RG+ + + G P P ++ ++G+I P P P L+ P G
Sbjct: 1052 AGPPGIGIPGLRGEKGDQGIA----GFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVG 1106
>gi|224282119 splicing factor, arginine/serine-rich 14 [Homo
sapiens]
Length = 1082
Score = 30.4 bits (67), Expect = 3.8
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 7 ARTLRLWGPRSLGVALGVFMTIGFALQLLGGPFQRRLPGLQLRQPSAPSLRPALPSCPP 65
A+ LR W R ++ G L+ G R+ PGL +PS P A CPP
Sbjct: 685 AQGLRGWKARRATTGTQTLLSSGTRLKHHG----RQAPGLSQAKPSLPDRNDAAKDCPP 739
>gi|224282117 splicing factor, arginine/serine-rich 14 [Homo
sapiens]
Length = 1082
Score = 30.4 bits (67), Expect = 3.8
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 7 ARTLRLWGPRSLGVALGVFMTIGFALQLLGGPFQRRLPGLQLRQPSAPSLRPALPSCPP 65
A+ LR W R ++ G L+ G R+ PGL +PS P A CPP
Sbjct: 685 AQGLRGWKARRATTGTQTLLSSGTRLKHHG----RQAPGLSQAKPSLPDRNDAAKDCPP 739
>gi|239754195 PREDICTED: hypothetical protein [Homo sapiens]
Length = 631
Score = 30.0 bits (66), Expect = 4.9
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 14 GPRSLGVALGVFMTIGFALQLLGGPFQRRLPGLQLRQ---PSAPSLRPALPSCP 64
GP L + LG + G + ++G P Q R L LR P P LRP P P
Sbjct: 330 GPHFLHLQLGSTVDAGEEISVIGLPLQVRQVQLDLRAYAGPPLPLLRPPHPVVP 383
>gi|239748723 PREDICTED: hypothetical protein XP_002346783 [Homo
sapiens]
Length = 541
Score = 30.0 bits (66), Expect = 4.9
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 14 GPRSLGVALGVFMTIGFALQLLGGPFQRRLPGLQLRQ---PSAPSLRPALPSCP 64
GP L + LG + G + ++G P Q R L LR P P LRP P P
Sbjct: 240 GPHFLHLQLGSTVDAGEEISVIGLPLQVRQVQLDLRAYAGPPLPLLRPPHPVVP 293
>gi|239742758 PREDICTED: hypothetical protein XP_002342618 [Homo
sapiens]
Length = 631
Score = 30.0 bits (66), Expect = 4.9
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 14 GPRSLGVALGVFMTIGFALQLLGGPFQRRLPGLQLRQ---PSAPSLRPALPSCP 64
GP L + LG + G + ++G P Q R L LR P P LRP P P
Sbjct: 330 GPHFLHLQLGSTVDAGEEISVIGLPLQVRQVQLDLRAYAGPPLPLLRPPHPVVP 383
>gi|218563739 hypothetical protein LOC124944 isoform 3 [Homo
sapiens]
Length = 138
Score = 30.0 bits (66), Expect = 4.9
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 172 YKSTSSAFRKSPSLAAFLANPRGFYRPGARGDHYARNLLWFDFGLPFPPE------KRAK 225
+ + +AF K L L GA+ + ++ D G+P P E K+
Sbjct: 12 FSAAGAAFTKLGELTMQLHPVADSSPAGAQIKATVKRKVYEDSGIPLPAESPKKGPKKVA 71
Query: 226 RGNIHPPRDPNPPQLQVLPSGAGP 249
G + PP PP +P GP
Sbjct: 72 SGVLSPPPAAPPPSSSSVPEAGGP 95
>gi|239740767 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 29.6 bits (65), Expect = 6.4
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 41 RRLPGLQLRQPSAPSLRPALPSCPP 65
R LP L LRQP P LR AL S P
Sbjct: 87 RALPALPLRQPHPPVLRAALGSLKP 111
>gi|116292174 fidgetin-like 2 [Homo sapiens]
Length = 653
Score = 29.6 bits (65), Expect = 6.4
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 2 GPLSPARTLRLWGPRSLGVALGVFMTIGFALQLLGGPFQRRLPGLQLRQPSA 53
G L P RT+ L+GPR G AL +G L G RL G L P A
Sbjct: 420 GSLRPPRTVLLFGPRGAGKAL-----LGRCLATQLGATLLRLRGATLAAPGA 466
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 29.6 bits (65), Expect = 6.4
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 198 PGARGDHYARNLLWFDFGLPFPPEKRAKRGNIHPPRDPNPPQLQVLPSGAGPRAQT---- 253
PG +GD +R D+GL P RG PP P P +Q+ G QT
Sbjct: 1585 PGPKGDKGSRG----DWGLQGPRGPPGPRGRPGPPGPPGGP-IQLQQDDLGAAFQTWMDT 1639
Query: 254 ---LNPNALIHPVSTVTDHRSQI 273
L P + +P V D +I
Sbjct: 1640 SGALRPESYSYPDRLVLDQGGEI 1662
>gi|46276868 hypothetical protein LOC9710 [Homo sapiens]
Length = 1070
Score = 29.6 bits (65), Expect = 6.4
Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 23/111 (20%)
Query: 216 LPFPPEKRAKRGNIHPPRDPNP-------------PQLQV---LPSGAGPRAQTLNPNAL 259
LP PP RA + H P P P PQ+Q L GP+ P A
Sbjct: 694 LPVPPPPRAPQAGAHTPLTPQPGLAPQQQSPKQQQPQVQYYQHLLQPIGPQQPPPQPRA- 752
Query: 260 IHPVSTVTDHRSQISSPASFDLGSSSFIQW-GLAWLDS-VFDLVMVAEYFD 308
P V H S + G S QW G++ L S ++ L +V+ Y D
Sbjct: 753 --PGKWV--HGSSQQPAQAVGAGLSPLGQWPGISDLSSDLYSLGLVSSYMD 799
>gi|24497460 Shaw-related voltage-gated potassium channel protein 3
[Homo sapiens]
Length = 757
Score = 29.3 bits (64), Expect = 8.4
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 217 PFPPEKRAKRGNIHPPRDPNPPQLQVLPSGAGPRAQTLNPNAL 259
P PP G I PP PP + V +GA P +P L
Sbjct: 582 PPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPAGPHTHPGLL 624
>gi|122937193 DNB5 [Homo sapiens]
Length = 748
Score = 29.3 bits (64), Expect = 8.4
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 219 PPEKRAKRGNIHPPRDPNPPQL-QVLPSGAGPRAQTLNPNALIHPVSTVTDHRSQISSPA 277
P EKRA + P P+PP L + P + P N ++ I P S +T S
Sbjct: 296 PSEKRAAMKSPSLPLPPSPPVLPEEGPGDSLPSHTATNFSSPISPPSPLTPKYGSFISRD 355
Query: 278 SFDLGSSSFI-QWGLAWLDSV 297
S G S F +G A +DSV
Sbjct: 356 SSLTGISEFASSFGTANIDSV 376
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,002,093
Number of Sequences: 37866
Number of extensions: 1078819
Number of successful extensions: 3867
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3817
Number of HSP's gapped (non-prelim): 61
length of query: 486
length of database: 18,247,518
effective HSP length: 106
effective length of query: 380
effective length of database: 14,233,722
effective search space: 5408814360
effective search space used: 5408814360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.