Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 31542783
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens]
(192 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens] 409 e-115
gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens] 409 e-115
gi|5902054 ring finger protein 5 [Homo sapiens] 229 1e-60
gi|209529683 ring finger protein 185 isoform 2 [Homo sapiens] 201 2e-52
gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming... 55 5e-08
gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming... 55 5e-08
gi|21071052 helicase-like transcription factor [Homo sapiens] 51 5e-07
gi|21071054 helicase-like transcription factor [Homo sapiens] 51 5e-07
gi|4508005 tripartite motif-containing 26 [Homo sapiens] 50 1e-06
gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo s... 49 3e-06
gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo... 49 3e-06
gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming ... 48 4e-06
gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo sapi... 48 6e-06
gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens] 48 6e-06
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 47 8e-06
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 47 8e-06
gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming ... 47 1e-05
gi|87241872 ring finger protein 151 [Homo sapiens] 46 2e-05
gi|47716512 mex-3 homolog B [Homo sapiens] 45 4e-05
gi|8923898 zinc finger protein 313 [Homo sapiens] 45 4e-05
gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens] 45 5e-05
gi|237681125 breast cancer 1, early onset isoform 5 [Homo sapiens] 45 5e-05
gi|237681123 breast cancer 1, early onset isoform 4 [Homo sapiens] 45 5e-05
gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 45 5e-05
gi|40807469 TRAF interacting protein [Homo sapiens] 45 5e-05
gi|68160937 tripartite motif-containing 25 [Homo sapiens] 44 6e-05
gi|239755644 PREDICTED: tripartite motif-containing 77 [Homo sap... 44 6e-05
gi|239750143 PREDICTED: tripartite motif-containing 77 [Homo sap... 44 6e-05
gi|239744448 PREDICTED: hypothetical protein XP_002343148 [Homo ... 44 6e-05
gi|225903455 tripartite motif-containing 77 [Homo sapiens] 44 6e-05
>gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 409 bits (1051), Expect = e-115
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW 60
MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW
Sbjct: 1 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW 60
Query: 61 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENR 120
PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENR
Sbjct: 61 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENR 120
Query: 121 GGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF 180
GGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF
Sbjct: 121 GGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF 180
Query: 181 VALVIMFWLLIA 192
VALVIMFWLLIA
Sbjct: 181 VALVIMFWLLIA 192
>gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 409 bits (1051), Expect = e-115
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW 60
MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW
Sbjct: 1 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW 60
Query: 61 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENR 120
PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENR
Sbjct: 61 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENR 120
Query: 121 GGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF 180
GGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF
Sbjct: 121 GGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF 180
Query: 181 VALVIMFWLLIA 192
VALVIMFWLLIA
Sbjct: 181 VALVIMFWLLIA 192
>gi|5902054 ring finger protein 5 [Homo sapiens]
Length = 180
Score = 229 bits (583), Expect = 1e-60
Identities = 109/174 (62%), Positives = 127/174 (72%), Gaps = 5/174 (2%)
Query: 18 GGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCP 77
GGP G + E GG +TFECNICL+TA++AV+S+CGHL+CWPCLHQWLETRP RQ CP
Sbjct: 9 GGPEGPNR---ERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECP 65
Query: 78 VCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENRGGFQGFGFGDGGFQMSF 137
VCKAGISR+KV+PLYGRGS QDPR KTPPRPQGQRP PE+RGGFQ FG GGF SF
Sbjct: 66 VCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFG-DTGGFHFSF 124
Query: 138 GIGAFPFGIFATAFNINDG-RPPPAVPGTPQYVDEQFLSRLFLFVALVIMFWLL 190
G+GAFPFG F T FN ++ R V + + LFLF+A+ FWLL
Sbjct: 125 GVGAFPFGFFTTVFNAHEPFRRGTGVDLGQGHPASSWQDSLFLFLAIFFFFWLL 178
>gi|209529683 ring finger protein 185 isoform 2 [Homo sapiens]
Length = 136
Score = 201 bits (512), Expect = 2e-52
Identities = 117/192 (60%), Positives = 120/192 (62%), Gaps = 56/192 (29%)
Query: 1 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW 60
MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFE
Sbjct: 1 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFE---------------------- 38
Query: 61 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENR 120
C +C ++D VI L G P
Sbjct: 39 ---------------CNIC-LDTAKDAVISLCGHLFCW------------------PCLH 64
Query: 121 GGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF 180
GFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF
Sbjct: 65 QGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLF 124
Query: 181 VALVIMFWLLIA 192
VALVIMFWLLIA
Sbjct: 125 VALVIMFWLLIA 136
>gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 2 [Homo sapiens]
Length = 428
Score = 54.7 bits (130), Expect = 5e-08
Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 34 DSTFE-CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 92
DSTFE C IC ++ KD I CGHL C CL W + + Q CP C+ I + + +Y
Sbjct: 299 DSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHS--DSQTCPFCRCEIKGWEAVSIY 356
Query: 93 ---------GRGSTGQQDPRE-----------KTPPRPQGQRPEPEN 119
G++ Q+ RE PPRP +P N
Sbjct: 357 QFHGQATAEDSGNSSDQEGRELELGQVPLSAPPLPPRPDLPPRKPRN 403
>gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 1 [Homo sapiens]
Length = 474
Score = 54.7 bits (130), Expect = 5e-08
Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 34 DSTFE-CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 92
DSTFE C IC ++ KD I CGHL C CL W + + Q CP C+ I + + +Y
Sbjct: 345 DSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHS--DSQTCPFCRCEIKGWEAVSIY 402
Query: 93 ---------GRGSTGQQDPRE-----------KTPPRPQGQRPEPEN 119
G++ Q+ RE PPRP +P N
Sbjct: 403 QFHGQATAEDSGNSSDQEGRELELGQVPLSAPPLPPRPDLPPRKPRN 449
>gi|21071052 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 51.2 bits (121), Expect = 5e-07
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVI 89
S G D EC ICLD+ VI+ C H+FC PC+ Q ++ CP+C+ I D ++
Sbjct: 753 SSGSDE--ECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLL 810
>gi|21071054 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 51.2 bits (121), Expect = 5e-07
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVI 89
S G D EC ICLD+ VI+ C H+FC PC+ Q ++ CP+C+ I D ++
Sbjct: 753 SSGSDE--ECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLL 810
>gi|4508005 tripartite motif-containing 26 [Homo sapiens]
Length = 539
Score = 50.1 bits (118), Expect = 1e-06
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 39 CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTG 98
C+ICLD +D V CGH+FC C +R VCP+CK ++ + P++ S
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVWQLASLV 75
Query: 99 QQDPREKTPPRPQGQRP 115
+ R K +G++P
Sbjct: 76 ENIERLKV---DKGRQP 89
>gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo
sapiens]
Length = 731
Score = 48.5 bits (114), Expect = 3e-06
Identities = 32/82 (39%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 6 PSASASPENSSAGGPSGSS-------NGAGESGGQDST-FECNICLDTAKDAVISLCGHL 57
PSA +SS G S NG S S F C IC D ++A ++ CGH
Sbjct: 95 PSAGVGGSSSSLGSGSRKRPLLAPLCNGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHS 154
Query: 58 FCWPCLHQWLETRPNRQVCPVC 79
FC+ C+HQ LE NR CP C
Sbjct: 155 FCYKCIHQSLEDN-NR--CPKC 173
>gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo
sapiens]
Length = 707
Score = 48.5 bits (114), Expect = 3e-06
Identities = 32/82 (39%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 6 PSASASPENSSAGGPSGSS-------NGAGESGGQDST-FECNICLDTAKDAVISLCGHL 57
PSA +SS G S NG S S F C IC D ++A ++ CGH
Sbjct: 95 PSAGVGGSSSSLGSGSRKRPLLAPLCNGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHS 154
Query: 58 FCWPCLHQWLETRPNRQVCPVC 79
FC+ C+HQ LE NR CP C
Sbjct: 155 FCYKCIHQSLEDN-NR--CPKC 173
>gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming
sequence [Homo sapiens]
Length = 906
Score = 48.1 bits (113), Expect = 4e-06
Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 35 STFE-CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVI---P 90
STF+ C IC + KD I CGHL C CL W E+ Q CP C+ I + I P
Sbjct: 376 STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEPIVVDP 433
Query: 91 LYGRGS 96
RGS
Sbjct: 434 FDPRGS 439
>gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
sapiens]
Length = 346
Score = 47.8 bits (112), Expect = 6e-06
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 39 CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPL 91
C +CL+ + + CGHLFCW C+ W ++ CP+C+ K+I L
Sbjct: 293 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAE---CPLCREKFPPQKLIYL 342
>gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens]
Length = 326
Score = 47.8 bits (112), Expect = 6e-06
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 39 CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPL 91
C +CL+ + + CGHLFCW C+ W ++ CP+C+ K+I L
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAE---CPLCREKFPPQKLIYL 322
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo
sapiens]
Length = 488
Score = 47.4 bits (111), Expect = 8e-06
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 17 AGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVC 76
AG + S+ A E+ +++ C++CL+ K+ VI CGH FC C+ +W E C
Sbjct: 9 AGASAASTAAALENLQVEAS--CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPC 66
Query: 77 PVCK 80
PVC+
Sbjct: 67 PVCR 70
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo
sapiens]
Length = 518
Score = 47.4 bits (111), Expect = 8e-06
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 17 AGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVC 76
AG + S+ A E+ +++ C++CL+ K+ VI CGH FC C+ +W E C
Sbjct: 9 AGASAASTAAALENLQVEAS--CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPC 66
Query: 77 PVCK 80
PVC+
Sbjct: 67 PVCR 70
>gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming
sequence b [Homo sapiens]
Length = 982
Score = 47.0 bits (110), Expect = 1e-05
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 35 STFE-CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGI 83
STF+ C IC + KD I CGHL C CL W E+ + Q CP C+ I
Sbjct: 368 STFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQES--DGQGCPFCRCEI 415
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 46.2 bits (108), Expect = 2e-05
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 34 DSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVI 89
DS F C++C K C H+FC C+ +WL ++ CP C+ + R KV+
Sbjct: 15 DSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWL---ARQKTCPCCRKEVKRKKVV 67
>gi|47716512 mex-3 homolog B [Homo sapiens]
Length = 569
Score = 45.1 bits (105), Expect = 4e-05
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 7 SASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGH-LFCWPCLHQ 65
++ +S +SS+ S SS+G G +D C++C ++ A + CGH LFC C ++
Sbjct: 490 TSGSSSSSSSSSSSSSSSSGLRRKGSRD----CSVCFESEVIAALVPCGHNLFCMECANR 545
Query: 66 WLETRPNRQVCPVCKAGISR 85
E + CPVC +++
Sbjct: 546 ICE--KSEPECPVCHTAVTQ 563
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 45.1 bits (105), Expect = 4e-05
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 22 GSSNGAGESGGQD--STFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVC 79
G++ AG + D F C +CL+ + V CGH+FC CL + L +P + VC VC
Sbjct: 10 GAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECL--KPKKPVCGVC 67
Query: 80 KAGIS 84
++ ++
Sbjct: 68 RSALA 72
>gi|237681119 breast cancer 1, early onset isoform 2 [Homo
sapiens]
Length = 1884
Score = 44.7 bits (104), Expect = 5e-05
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 38 ECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISR 85
EC ICL+ K+ V + C H+FC C+ + L + CP+CK I++
Sbjct: 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70
>gi|237681125 breast cancer 1, early onset isoform 5 [Homo
sapiens]
Length = 699
Score = 44.7 bits (104), Expect = 5e-05
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 38 ECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISR 85
EC ICL+ K+ V + C H+FC C+ + L + CP+CK I++
Sbjct: 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70
>gi|237681123 breast cancer 1, early onset isoform 4 [Homo
sapiens]
Length = 759
Score = 44.7 bits (104), Expect = 5e-05
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 38 ECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISR 85
EC ICL+ K+ V + C H+FC C+ + L + CP+CK I++
Sbjct: 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70
>gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens]
Length = 1863
Score = 44.7 bits (104), Expect = 5e-05
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 38 ECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISR 85
EC ICL+ K+ V + C H+FC C+ + L + CP+CK I++
Sbjct: 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70
>gi|40807469 TRAF interacting protein [Homo sapiens]
Length = 469
Score = 44.7 bits (104), Expect = 5e-05
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 39 CNIC---LDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVI 89
C IC D ++D CGH F CL QW ET P+R CP C+ + + +I
Sbjct: 7 CTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSR-TCPQCRIQVGKRTII 59
>gi|68160937 tripartite motif-containing 25 [Homo sapiens]
Length = 630
Score = 44.3 bits (103), Expect = 6e-05
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 39 CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKA 81
C+ICL+ K+ V + CGH FC CL++ + + +CP C+A
Sbjct: 13 CSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCRA 55
>gi|239755644 PREDICTED: tripartite motif-containing 77 [Homo
sapiens]
Length = 455
Score = 44.3 bits (103), Expect = 6e-05
Identities = 20/46 (43%), Positives = 22/46 (47%)
Query: 35 STFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCK 80
S C+IC D D V CGH FC PCL E CPVC+
Sbjct: 11 SELTCSICTDYLTDPVTICCGHRFCSPCLCLLWEDTLTPNCCPVCR 56
>gi|239750143 PREDICTED: tripartite motif-containing 77 [Homo
sapiens]
Length = 455
Score = 44.3 bits (103), Expect = 6e-05
Identities = 20/46 (43%), Positives = 22/46 (47%)
Query: 35 STFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCK 80
S C+IC D D V CGH FC PCL E CPVC+
Sbjct: 11 SELTCSICTDYLTDPVTICCGHRFCSPCLCLLWEDTLTPNCCPVCR 56
>gi|239744448 PREDICTED: hypothetical protein XP_002343148 [Homo
sapiens]
Length = 450
Score = 44.3 bits (103), Expect = 6e-05
Identities = 20/46 (43%), Positives = 22/46 (47%)
Query: 35 STFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCK 80
S C+IC D D V CGH FC PCL E CPVC+
Sbjct: 11 SELTCSICTDYLTDPVTICCGHRFCSPCLCLLWEDTLTPNCCPVCR 56
>gi|225903455 tripartite motif-containing 77 [Homo sapiens]
Length = 450
Score = 44.3 bits (103), Expect = 6e-05
Identities = 20/46 (43%), Positives = 22/46 (47%)
Query: 35 STFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCK 80
S C+IC D D V CGH FC PCL E CPVC+
Sbjct: 11 SELTCSICTDYLTDPVTICCGHRFCSPCLCLLWEDTLTPNCCPVCR 56
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.140 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,050,210
Number of Sequences: 37866
Number of extensions: 570171
Number of successful extensions: 5093
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 194
Number of HSP's that attempted gapping in prelim test: 4597
Number of HSP's gapped (non-prelim): 651
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.