Guide to the Human Genome
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Name: PLOD1 Sequence: fasta or formatted (727aa) NCBI GI: 32307144
Description:

lysyl hydroxylase 1 precursor

Referenced in:

Collagen
Additional Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         45           1
 C cysteine            1.4         10           1
 D aspartate           5.9         43           1
 E glutamate           6.5         47           2
 F phenylalanine       5.4         39           2
 G glycine             7.2         52           3
 H histidine           3.7         27           2
 I isoleucine          4.3         31           1
 K lysine              5.0         36           2
 L leucine            11.6         84           4
 M methionine          1.8         13           1
 N asparagine          4.4         32           2
 P proline             4.5         33           1
 Q glutamine           4.1         30           2
 R arginine            6.5         47           2
 S serine              4.7         34           2
 T threonine           4.7         34           2
 V valine              6.2         45           2
 W tryptophan          1.8         13           1
 Y tyrosine            4.4         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lysyl hydroxylase 1 precursor 
PLOD2                 0.621   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 i...
PLOD2                 0.613   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 i...
PLOD3                 0.604   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 pr...
GLT25D2               0.043   glycosyltransferase 25 domain containing 2 
GLT25D1               0.030   glycosyltransferase 25 domain containing 1 
CERCAM                0.028   cerebral endothelial cell adhesion molecule 1 [Homo...
OGFOD2                0.022   2-oxoglutarate and iron-dependent oxygenase domain c...
GOLGA4                0.007   golgi autoantigen, golgin subfamily a, 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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